Jhonathan E. Ephrath

Root taxa identification in plant mixtures – current techniques and future challenges

BackgroundStudying root biomass, root system distribution and belowground interactions is essential for understanding the composition of plant communities, the impact of global change, and terrestrial biogeochemistry. Most soil samples and minirhizotron pictures hold roots of more than one species or plant individual. The identification of taxa by their roots would allow species-specific questions to be posed; information about root affiliation to plant individuals could be used to determine intra-specific competition.ScopeResearchers need to be able to discern plant taxa by roots as well as to quantify abundances in mixed root samples. However, roots show less distinctive features that permit identification than aboveground organs. This review discusses the primary use of available methods, outlining applications, shortcomings and future developments.ConclusionMethods are either non-destructive, e.g. visual examination of root morphological criteria in situ, or require excavated and excised root samples. Among the destructive methods are anatomical keys, chemotaxonomic approaches and molecular markers. While some methods allow for discerning the root systems of individual plants, others can distinguish roots on the functional group or plant taxa level; methods such as IR spectroscopy and qPCR allow for quantifying the root biomass proportion of species without manual sorting.

Calibration of minirhizotron readings against root length density data obtained from soil cores

The minirhiozotron (MR) root observation method was studied versus root length density (RLD) obtained from soil cores. Two plant species, acacia (Acacia saligna) and wheat (Triticum aestivum L.) were grown in a 1-m3 container on Silt Loam (Typic Torrifluvent) and on fine dune sand (Typic Torripsamment), respectively. Roots of both plants were measured periodically by the two methods. The MR observation tubes (MROT) were inserted, either vertically or at 45°. The correlation between the number of roots obtained by the MR and RLD was significant for the entire profile. However, an appreciable error in root estimation by the MR root observation method at the upper 10-cm soil might occur. No significant difference was obtained from MROT oriented vertically or at 45°. The differences between the correlation coefficients of the two methods were not significant, for both plants and soils, indicating that this correlation expresses the geometry of the two measurement systems, not affected by plant or soil types. We concluded that the MR method may be used as an in situ, non-destructive root measuring method with reasonable confidence.

Phenotypic plasticity and water flux rates of Citrus root orders under salinity

Knowledge about the root system structure and the uptake efficiency of root orders is critical to understand the adaptive plasticity of plants towards salt stress. Thus, this study describes the phenological and physiological plasticity of Citrus volkameriana rootstocks under severe NaCl stress on the level of root orders. Phenotypic root traits known to influence uptake processes, for example frequency of root orders, specific root area, cortical thickness, and xylem traits, did not change homogeneously throughout the root system, but changes after 6 months under 90 mM NaCl stress were root order specific. Chloride accumulation significantly increased with decreasing root order, and the Cl− concentration in lower root orders exceeded those in leaves. Water flux densities of first-order roots decreased to <20% under salinity and did not recover after stress release. The water flux densities of higher root orders changed marginally under salinity and increased 2- to 6-fold in second and third root orders after short-term stress release. Changes in root order frequency, morphology, and anatomy indicate rapid and major modification of C. volkameriana root systems under salt stress. Reduced water uptake under salinity was related to changes of water flux densities among root orders and to reduced root surface areas. The importance of root orders for water uptake changed under salinity from root tips towards higher root orders. The root order-specific changes reflect differences in vulnerability (indicated by the salt accumulation) and ontogenetic status, and point to functional differences among root orders under high salinity.

Influence of salinity on root hydraulic properties of three olive varieties

Abstract Three varieties of olive, Barnea, Arbequina and Proline, varying in salt tolerance, were examined to check the sensitivity of their root system hydraulic properties to salinity. Up to three levels of saline water (EC = 1.2, 4.2 and 7.5 dS m−1) were used for long-term irrigation of mature trees. Specific conductivities and embolism rates of roots and branches were estimated by low-pressure conductivity measurement; variability and plasticity of root and branch axial conductivities were calculated. Cross-sections of roots were analysed with respect to xylem anatomy. Barnea, and to a minor degree Arbequina, were found to be more salt-resistant than Proline. Axial root hydraulics under salt stress reacted in a more plastic fashion than branch conductivities. Increased specific conductivities of roots, different plasticities of root hydraulics and modifications in mean conduit diameters can be dismissed as foremost reasons of the observed differences in salt resistance. Instead, a high within-population variability in root conductivity, as found in the salt-tolerant Barnea and Arbequina varieties, coming to full effect in high conductivity roots of Barnea trees, and an increased bimodal distribution of conduit sizes may represent favourable traits to enhance water uptake in soils with heterogeneous salinity.

Tree/crop complementarity in an arid zone runoff agroforestry system in northern Kenya

We tested the hypothesis that shallow-rooted crops and deep-rooted trees will share the available water in a complementary manner, when grown together, in a field trail in the Turkana district of northern Kenya during 1994 to 1996. Such studies have been few in dryland agroforestry. The effects of two different Acacia saligna (Labill.) H. Wendl. tree planting densities (2500 and 833 trees per ha), tree pruning (no pruning vs. pruning) and annual intercrops (no intercrop vs. intercrop) on total biomass production and their interactions were tested. In 1996 Sorghum bicolor (L.) Moench was used during the first vegetation period and Vigna unguiculata (L.) Walp. during the second. We used naturally generated runoff water for irrigation to supplement low rainfall amounts typical for the area. High biomass production (> 13 t ha−1 over a two year period) was observed irrespective of intercropping of pruned trees or sole tree stands. Although the pruning treatment reduced total tree biomass yields by a quarter, the introduction of annual intercrops after the pruning of trees outweighed this loss. The yields of the intercrops in the pruned tree treatments were similar to their yields when grown as monocrops. The calculation of land equivalent ratios showed overyielding for intercropped, pruned systems. The high values for LER (1.36 at low and 1.47 at high density of trees) indicate that there is complementarity in resource use between the different species.

A model for nutrient and water flow and their uptake by plants grown in a soilless culture

The objective of this study was to develop a sensitive means of control to optimize nutrient concentrations in the root zone of a soilless system, considering plant water and nutrient uptake, and solution circulation rates. A model is proposed to simulate ornamental plants’ growth in a channel with a non-interacting soilless substrate, irrigated by point sources with constant discharge rates, spaced uniformly along the channel. The model accounts for compensation for transpiration water losses and consequent salinity buildup, and its interactions with plant growth and nutrient uptake. The added water may contain given concentrations of nutrients and/or toxic (saline) compounds, which would cause salinity buildup. Uptake of each solute is specific, according to a Michaelis–Menten kinetics mechanism, but passive uptake by the transpiration stream is also accounted for. Plant growth is affected by time/age and ionic balance in the solution. The model was calibrated with lettuce (Lactuca sativa L.) plants grown in volcanic ash. Simulation of potassium concentration change as a result of discharge rate and emitter spacing revealed that the two parameters could compensate one for the other, once a target lower limit is set. Potassium appeared to be most sensitive to sodium accumulation in the growth medium; this accumulation changed ionic concentration balance, which affected pH and bicarbonate concentration. Passive uptake of calcium by the transpiration stream is highly affected by the root fraction involved, but its calculated contribution is below published values is highly affected by the root fraction involved, but its calculated contribution is below published values.

Water use efficiency and uptake patterns in a runoff agroforestry system in an arid environment

Water is the most limiting factor for plant production in arid to semiarid regions. In order to overcome this limitation surface runoff water can be used to supplement seasonal rainfall. During 1996 we conducted a runoff irrigated agroforestry field trial in the Turkana district of Northern Kenya. The effects of two different Acacia saligna (Labill.) H. Wendl. tree planting densities (2500 and 833 trees per ha), tree pruning (no pruning vs. pruning) and annual intercrops (no intercrop vs. intercrop: Sorghum bicolor (L.) Moench during the first season and Vigna unguiculata (L.) Walp. during the second season) on water use were investigated. The annual crops were also grown as monocrops. Water consumption ranged from 585 to 840 mm during the first season (only treatments including trees). During the second season, which was shorter and the plants relied solely on stored water in the soil profile, water consumption was less than half of that during the first season. Highest water consumptions were found for non-pruned trees at high density and the lowest were found for the annual crops grown as monocrops. Tree pruning decreased water uptake compared to non-pruned trees but soil moisture depletion pattern showed complementarity in water uptake between pruned trees and annual intercrops. The highest values of water use efficiency for an individual treatment were achieved when the pruned trees at high density were intercropped with sorghum (1.59 kg m−3) and cowpea (1.21 kg m−3). Intercropping and high tree density increased water use efficiency in our runoff agroforestry trial. We ascribe the observed improvement in water use efficiency to the reduction of unproductive water loss from the bare soil.

Adaptive Plasticity of Salt-Stressed Root Systems

Salinity can cause several challenges for plants, including water stress, mal-nutrition and accumulation of excess ions to potentially toxic levels. While salt exclusion, compartmentation and osmoregulation are the mechanisms particularly considered to increase the salt tolerance of plants, tolerance is determined by the integrating effects of several mechanisms at the cell, tissue and organ level.

Use of Logistic Equation for Detection of the Initial Parasitism Phase of Egyptian Broomrape (Phelipanche aegyptiaca) in Tomato

Abstract The dynamics of the host–parasite relationship between tomato cv. Brigade and Egyptian broomrape is temperature-related. This relationship was utilized for the development of an equation on the basis of thermal time (as measured by growing degree days, GDD, C) to predict the parasitism dynamics of Egyptian broomrape in tomato. To obtain a reliable prediction from thermal time values, studies based on a wide range of temperatures are essential. Four temperature-regime treatments and five levels of infestation with Egyptian broomrape seeds were tested in a multiclimate greenhouse (phytotron) and a temperature-controlled greenhouse, respectively. The day/night temperature regimes were 20/12 C, 23/15 C, 26/18 C, and 29/21 C and the infestation levels were 0 (noninfested control), 1, 5, 10, and 25 mg of Egyptian broomrape seeds per liter of soil. As expected, increasing temperature or infestation levels resulted in faster appearance and higher rate of attachments, respectively. The relation between development of attachments and GDD was described as a three-parameter logistic curve. In both temperature-regime and infestation-level experiments, the development of attachments began 200 GDD after planting and the maximal number of attachments was recorded 800 GDD after planting. A significant reduction in the aboveground biomass of the tomato plants due to increased Egyptian broomrape biomass was recorded only for the 26/18 C and 29/21 C day/night treatments and the three highest infestation levels (5, 10, and 25 mg L−1 soil). The ability to predict the start of parasitism can be used to develop a climate-based system for Egyptian broomrape control with herbicides. Nomenclature: Egyptian broomrape; Phelipanche aegyptiaca Pers. (syn. Orobanche aegyptiaca); tomato; Lycopersicon esculentum L.

Impact of treated wastewater on growth, respiration and hydraulic conductivity of citrus root systems in light and heavy soils

Roots interact with soil properties and irrigation water quality leading to changes in root growth, structure and function. We studied these interactions in an orchard and in lysimeters with clay and sandy loam soils. Minirhizotron imaging and manual sampling showed that root growth was three times lower in the clay relative to sandy loam soil. Treated wastewater (TWW) led to a large reduction in root growth with clay (45-55%) but not with sandy loam soil (<20%). Treated wastewater increased salt uptake, membrane leakage and proline content, and decreased root viability, carbohydrate content and osmotic potentials in the fine roots, especially in clay. These results provide evidence that TWW challenges and damages the root system. The phenology and physiology of root orders were studied in lysimeters. Soil type influenced diameter, specific root area, tissue density and cortex area similarly in all root orders, while TWW influenced these only in clay soil. Respiration rates were similar in both soils, and root hydraulic conductivity was severely reduced in clay soil. Treated wastewater increased respiration rate and reduced hydraulic conductivity of all root orders in clay but only of the lower root orders in sandy loam soil. Loss of hydraulic conductivity increased with root order in clay and clay irrigated with TWW. Respiration and hydraulic properties of all root orders were significantly affected by sodium-amended TWW in sandy loam soil. These changes in root order morphology, anatomy, physiology and hydraulic properties indicate rapid and major modifications of root systems in response to differences in soil type and water quality.