Jianqing Tian

Determinants influencing seasonal variations of methane emissions from alpine wetlands in Zoige Plateau and their implications

To understand the seasonality of methane flux from alpine wetlands in Zoige Plateau, 30 plots were set to measure the methane emissions in the growing and nongrowing seasons in three environmental types: dry hummock (DH), Carex muliensis (CM), and Eleocharis valleculosa (EV) sites. There were clearly seasonal patterns of methane flux in different environmental types in the growing and nongrowing seasons. Mean methane emission rate was 14.45 mg CH4 m(-2) h(-1) (0.17 to 86.78 mg CH4 m(-2) h(-1)) in the growing season, and 0.556 mg CH4 m(-2) h(-1) (0.002 to 6.722 mg CH4 m(-2) h(-1)) in the nongrowing season. In the growing season, the main maximum values of methane flux were found in July and August, except for a peak value in September in CM sites. In the nongrowing season, the similar seasonal variation pattern was shared among all the three sites, in which the methane emissions increased from February to April. In the growing season, the determining factors were surface temperatures (r(2) = 0.55, P < 0.05), standing water depths (r(2) = 0.32, P < 0.01) and plant community heights (r(2) = 0.61, P < 0.01), while in the nongrowing season, ice thickness (r(2) = 0.27, P < 0.05; in CM and EV sites) was found most related to flux. In our understanding, the seasonality of methane emissions in our study areas was temperature- and-plant-growth-dependent, and the water table position was also very important to shape the temperature- and-plant-growth-dependent seasonal variation of flux with its vigorous variations in alpine wetland ecosystems. Different environmental types within the wetland also influenced the seasonal pattern of methane flux. For an accurate estimate of the global methane source strength of alpine wetlands, the pronounced seasonal or even temporal variability in methane emission from alpine wetlands should be taken into consideration.

Spatial variations on methane emissions from Zoige alpine wetlands of Southwest China.

This study was aimed to understand the spatial variation of CH(4) emissions from alpine wetlands in Southwest China on a field-scale in two phenological seasons, namely the peak growing season and the spring thaw. Methane emission rates were measured at 30 plots, which included three kinds of environmental types: dry hummock, Carex muliensis and Eleocharis valleculosa sites. There were highly spatial variations of methane emissions among and within different environmental types in both phenological seasons. Mean methane emission rates ranged from 1.1 to 37.0 mg CH(4) m(-2) h(-1) in the peak growing season and from 0.004 to 0.691 mg CH(4) m(-)(2) h(-1) in the spring thaw. In the peak growing season, coefficients of variation (CV) averaged 38% among environmental types and 64% within environmental types; while in the spring thaw, CV were on the average 61% among environmental types and 96% within environmental types. The key influencing factors were the standing water table and the plant community height in the peak growing season, while in the spring thaw, no significant correlations between factors and methane emissions were found.

Effect of grazing intensities on the activity and community structure of methane-oxidizing bacteria of grassland soil in Inner Mongolia

The effects of different grazing intensities on in situ methane flux and the structure and diversity of the methanotrophic community are measured in the typical grassland of Inner Mongolia. Four grazing intensity sites founded in 1989, control (CK), low-intensity grazing (LG), middle-intensity grazing (MG) and heavy-intensity grazing (HG), were selected. Group-specific PCR-DGGE (polymerase chain reaction-denaturing gradient gel electrophoresis) of 16S rRNA genes for the type I and type II methanotrophs was used to characterize the composition of the methanotrophic community. DGGE patterns were further analyzed using the method of the Shannon-wiener index H and non-metric multi-dimensional scaling (MDS). The results showed that there were no significant differences in methane flux among different sites, yet methanotrophic communities showed significant differences. MDS analysis showed that type I methanotroph community composition at the CK site were significantly different from the three other sites. For type II methanotrophic community composition, it was similar between CK and HG site, and between LG and MG site, while that at the former two sites were significantly different from latter two ones. Additionally Shannon indices of type II methanotrophs were higher at the LG and MG sites than two other sites. Though grazing intensities had an impact on the structure of the methanotrophic community, management-induced changes in the structure of methanotrophic community did not reflect methane consumption capacity across sites. These results suggest that methane consumption is a complex process in soil, and we should be cautious when speculating on the change of methane consumption rates based on a change of methanotrophic community structure.

Relationship between archaeal community structure and vegetation type in a fen on the Qinghai-Tibetan Plateau

The contribution of different methanogenic precursors probably depends on vegetation in the cold Zoige peatlands. This study was carried out to elucidate the relationship between archaeal community dynamics and vegetation type over growing season. Soil samples were collected monthly during the growing season from two vegetation types (communities dominated by Carex muliensis vs. Eleocharis valleculosa) on an open fen at the Wetland National Nature Reserve of the Zoige peatlands on the Qinghai–Tibetan Plateau. Archaeal community structure was determined with terminal restriction fragment length polymorphism analysis of the 16S rRNA gene fragment. Methanosarcinales, Methanosaeta, Methanomicrobiales, Methanobacteriales, uncultured RC-II, and uncultured Crenarchaeota were detected in both vegetation types. The results suggested that seasonal change affects the activity rather than the structure of the archaeal community over the growing season. Ordination analyses indicated that archaeal community composition was related to vegetation type and plant height.

Living strategy of cold-adapted fungi with the reference to several representative species

ABSTRACT Our planet is dominant with cold environments that harbour enormously diverse cold-adapted fungi comprising representatives of all phyla. Investigation based on culture-dependent and independent methods has demonstrated that cold-adapted fungi are cosmopolitan and occur in diverse habitants and substrates. They live as saprobes, symbionts, plant and animal parasites and pathogens to perform crucial functions in different ecosystems. Pseudogymnoascus destructans caused bat white-nose syndrome and Ophiocordyceps sinensis as Chinese medicine are the representative species that have significantly ecological and economic significance. Adaptation to cold niches has made this group of fungi a fascinating resource for the discovery of novel enzymes and secondary metabolites for biotechnological and pharmaceutical uses. This review provides the current understanding of living strategy and ecological functions of cold-adapted fungi, with particular emphasis on how those fungi overcome the extreme low temperature and perform their ecological function.

Archaeal communities in the sediments of different mangrove stands at Dongzhaigang, China

PurposeKnowledge of archaeal communities is essential for understanding of the mechanism of carbon and nitrogen cycle in the mangrove sediment ecosystem. Presently, little is known about archaeal communities in the Dongzhaigang mangrove sediments. This study aimed to characterize the archaeal communities in sediments of different mangrove stands and to find out the correlations between archaeal communities and the environmental factors of sediments.Materials and methodsSediment samples were collected from the Dongzhaigang mangrove forest for analysis of soil properties and archaeal communities, by national standard methods and Illumina Miseq archaeal 16S ribosomal RNA (rRNA) gene sequencing, respectively.Results and discussionThe archaeal community in the Dongzhaigang mangrove forest was constituted by some phyla from “TACK” and “DPANN” supergroups, and dominated by Euryarchaeota. Among sediments of the four mangroves in Dongzhaigang, principal coordinates analysis (PCoA) scatter plot showed a trend of difference in the archaeal community structure in the Bruguiera gymnoihiza and Kandelia candel stands from that in the Laguncularia racemosa and Sonneratia apetala stands. The abundance of the order Methanosarcinales was the highest in the sediments of K. candel mangroves, whereas the order of Methanobacteriales dominated in B. gymnoihiza sediments. The highest richness and diversity values of Archaea occurred in K. candel sediments, while the lowest in B. gymnoihiza. Pearson correlation showed the significant relationships between sediment properties and some dominant genera, with a positive and significant correlation between sediment properties and genus Methanobacterium, coinciding with the maximum values of sediment properties and abundance of Methanobacterium in the sediment of B. gymnoihiza. Such results indicated that the difference of archaeal community structure among mangrove sediments may be caused by the different sediment characteristics. Methanogenic communities in the Dongzhaigang mangrove forest sediments were, at the order level, constituted by Methanobacteriales, Methanomicrobiales, Methanosarcinales, and Methanomassiliicoccales.ConclusionsThe investigation indicated that the Dongzhaigang mangrove sediment ecosystems support diverse archaeal communities and methanogenic communities, and that there was a general trend of difference in the archaeal community structure in the B. gymnoihiza and K. candel mangrove sediments from that in the L. racemosa and S. apetala sediments. Such difference may be caused by the difference in sediment characteristics.

Effects of enclosure time on the community composition of methanotrophs in the soils of the Inner Mongolia grasslands

PurposeDespite the great number of studies about methane uptake and its response to grazing in the Inner Mongolia grasslands, only a few focused on the methanotrophic composition. This study aimed to investigate the methanotrophic community structure and abundance, then to analyze the abiotic driving factors of methanotrophic community structure in different enclosed times in this area.Materials and methodsIn this study we chose typical grasslands in the Xilin River Basin of Inner Mongolia, China to investigate methanotrophic community structure and abundance under different enclosure treatments as follows: 79E (grassland enclosed since 1979), 99E (grassland enclosed since 1999), and G (freely grazed grassland). A clone library was used to reveal the methanotroph community structure, and their relationships with abiotic factors were analyzed by redundancy analysis. Methanotroph abundance was determined by real-time PCR.Results and discussionThe OTUs of the three treatments mainly belonged to Type I methanotrophs, probably caused by the high pH value. Among all OTUs, only OTU1 belonged to upland soil cluster γ (USC-γ), whose abundance was the largest in all OTUs, indicating the USC-γ cluster was the main one to oxidize CH4 in the Inner Mongolia grasslands. Methanotrophic abundance (represented by the pmoA gene copies per gram of dry weight soil) decreased with the enclosure time as G (4.5 × 107) > 99E (2.8 × 107) > 79E (2.0 × 107), mainly caused by the lower soil moisture content in G. Lower soil moisture content facilitates more CH4 and O2 diffusive into soil thus leading to the proliferation of methanotrophs.ConclusionsThis study found a high abundance of methanotrophs in the soils of the Inner Mongolia grasslands, with the USC-γ cluster having the largest abundance, which may play a key role in oxidizing CH4 in the Inner Mongolia grasslands. Combined with those of previous studies, the results showed an obvious change of methanotrophic community composition with the increase of enclosure time.

Ecological Succession Pattern of Fungal Community in Soil along a Retreating Glacier

Accelerated by global climate changing, retreating glaciers leave behind soil chronosequences of primary succession. Current knowledge of primary succession is mainly from studies of vegetation dynamics, whereas information about belowground microbes remains unclear. Here, we combined shifts in community assembly processes with microbial primary succession to better understand mechanisms governing the stochastic/deterministic balance. We investigated fungal succession and community assembly via high-throughput sequencing along a well-established glacier forefront chronosequence that spans 2–188 years of deglaciation. Shannon diversity and evenness peaked at a distance of 370 m and declined afterwards. The response of fungal diversity to distance varied in different phyla. Basidiomycota Shannon diversity significantly decreased with distance, while the pattern of Rozellomycota Shannon diversity was unimodal. Abundance of most frequencies OTU2 (Cryptococcus terricola) increased with successional distance, whereas that of OTU65 (Tolypocladium tundrense) decreased. Based on null deviation analyses, composition of the fungal community was initially governed by deterministic processes strongly but later less deterministic processes. Our results revealed that distance, altitude, soil microbial biomass carbon, soil microbial biomass nitrogen and NH4+–N significantly correlated with fungal community composition along the chronosequence. These results suggest that the drivers of fungal community are dynamics in a glacier chronosequence, that may relate to fungal ecophysiological traits and adaptation in an evolving ecosystem. The information will provide understanding the mechanistic underpinnings of microbial community assembly during ecosystem succession under different scales and scenario.

Environmental factors driving fungal distribution in freshwater lake sediments across the Headwater Region of the Yellow River, China

Dispersal limitation and environmental filtering are two primary processes involved in shaping microbial community structure. The pristine environmental and geographical relatively isolation of small lakes distributed in the Headwater Region of Yellow River (HRYR) offer a unique opportunity to test the relative roles of these two processes on fungal communities. Here, we investigated the fungal community in sediment samples from 10 lakes located in the HRYR using high-throughput sequencing. The results showed that the fungal community was dominated by Sordariomycetes, Leotiomycetes, Dothideomycetes, Pezizomycetes and Agaricomycetes. The results revealed that altitude, mean annual temperature, C/N ration, dissolve organic carbon and total nitrogen were the best predictors for shaping fungal community structure in these lakes. Significant spatial and environmental distance decay relationships in the fungal community were detected. The partial Mantel test indicated that the fungal community structure was significantly correlated with environmental distance but not with geographic distance. Overall, environmental filtering plays a more important role than dispersal limitation in fungal community structure at a local scale in such an pristine and isolated region.

Changes in methane oxidation ability and methanotrophic community composition across different climatic zones

PurposeMicrobial oxidation by bacteria with the potential to oxidize C1 compounds (methanotrophs) is the only biological sink for atmospheric methane (CH4). Aerobic methanotrophs are particularly active in forest soils, but the role of aerobic methanotrophs in native forest soils in China remains poorly understood. The pmoA gene, encoding the key enzyme methane monooxygenase (particulate MMO), is widely used to identify methanotrophic communities.Materials and methodsWe collected soils from different vegetation types in one subtropical and one temperate forest in China. Potential CH4 oxidation rates and methanotroph communities were assessed via laboratory incubation and pmoA-based phylogenetic analysis, respectively.Results and discussionAcross all sampling sites, we observed distinct variations in methanotroph community composition and CH4 oxidation rates. In all soils, CH4 oxidation rates increased with increasing CH4 concentration. Elevated temperature resulted in an increase in the CH4 oxidation rates in coniferous forests, while a decrease in deciduous forests. Restriction fragment length polymorphism analyses indicated that methantrophic community varied in different vegetation types. The methanotroph communities were dominated by type II methanotrophs (including soil cluster alpha (SCα), Methylocystis, and USCα) and type I methanotrophs (including USCγ and Methylobacter) in deciduous and coniferous forests, respectively.ConclusionsIt is suggested that intrinsic differences in CH4 oxidation rate responses to temperature between coniferous and deciduous soils are likely due to different methanotroph community structures. Taken together, the direction of CH4 feedback responses to disturbance was site specific.