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Featured researches published by Jin-Soo Kim.


FEBS Journal | 2006

Dissociation/association properties of a dodecameric cyclomaltodextrinase : Effects of pH and salt concentration on the oligomeric state

Hee Seob Lee; Jin-Soo Kim; Kyuho Shim; Jung Woo Kim; Kuniyo Inouye; Hiroshi Oneda; Young-Wan Kim; Kyung Ah Cheong; Hyunju Cha; Eui Jeon Woo; Joong Hyuck Auh; Sung Joon Lee; Jung Wan Kim; Kwan Hwa Park

As an effort to elucidate the quaternary structure of cyclomaltodextrinase I‐5 (CDase I‐5) as a function of pH and salt concentration, the dissociation/association processes of the enzyme were investigated under various pH and salt conditions. Previous crystallographic analysis of CDase I‐5 indicated that it existed exclusively as a dodecamer at pH 7.0, forming an assembly of six 3D domain‐swapped dimeric subunits. In the present study, analytical ultracentrifugation analysis suggested that CDase I‐5 was present as a dimer in the pH range of 5.0–6.0, while the dodecameric form was predominant at pH values above 6.5. No dissociation of the dodecamer was observed at pH 7.0 and the above. Gel filtration chromatography showed that CDase I‐5 dissociated into dimers at a rate of 8.58 × 10−2 h−1 at pH 6.0. A mutant enzyme with three histidine residues (H49, H89, and H539) substituted with valines dissociated into dimers faster than the wild‐type enzyme at both pH 6.0 and 7.0. The tertiary structure indicated that the effect of pH on dissociation of the oligomer was mainly due to the protonation of H539. Unlike the pH‐dependent process, the dissociation of wild‐type CDase I‐5 proceeded very fast at pH 7.0 in the presence of 0.2–1.0 m of KCl. Stopped‐flow spectrophotometric analysis at various concentrations of KCl showed that the rate constants of dissociation (kd) from dodecamers into dimers were 5.96 s−1 and 7.99 s−1 in the presence of 0.2 m and 1.0 m of KCl, respectively.


Comparative Biochemistry and Physiology B | 1997

Ribonucleases Endowed with Specific Toxicity for Spermatogenic Layers

Josef Matoušek; Jin-Soo Kim; Josef Souček; Jan Rı̀ha; Marc Ribo; Peter A. Leland; Ronald T. Raines

Bovine seminal ribonuclease (BS-RNase) is a dimer in which the subunits are cross-linked by disulfide bonds between Cys31 of one subunit and Cys32 of the other. Dimeric BS-RNase is resistant to ribonuclease inhibitor (RI), a protein endogenous to mammalian cells, and is toxic to a variety of cell types. Monomeric BS-RNase (like its homolog, RNase A) is bound tightly by RI and is not cytotoxic. The three-dimensional structure of the RI·RNase A complex suggests that carboxymethylation of C32S BS-RNase (to give MCM31) or C31S BS-RNase (MCM32) could diminish affinity for RI. We find that MCM31 and MCM32 are not only resistant to RI, but are also aspermatogenic to mice. In contrast to the aspermatogenic activity of dimeric BS-RNase, that of MCM31 and MCM32 is directed only at spermatogenic layers. Intratesticular injection of MCM31 or MCM32 affects neither the diameter of seminiferous tubules nor the weight of testes. Also in contrast to wild-type BS-RNase, MCM31 and MCM32 are not toxic to other cell types. Direct immunofluorescence reveals that MCM31 and MCM32 bind only to spermatogonia and primary spermatocytes. This cell specificity makes MCM31 and MCM32 of potential use in seminoma therapy and contraception.


Protein Science | 2008

Ribonuclease S-peptide as a carrier in fusion proteins.

Jin-Soo Kim; Ronald T. Raines


Journal of Biological Chemistry | 1995

Mechanism of Ribonuclease Cytotoxicity

Jin-Soo Kim; Josef Souček; Josef Matoušek; Ronald T. Raines


Journal of Biological Chemistry | 1995

Structural Basis for the Biological Activities of Bovine Seminal Ribonuclease

Jin-Soo Kim; Josef Souček; Josef Matoušek; Ronald T. Raines


Biochemical Journal | 1995

Catalytic activity of bovine seminal ribonuclease is essential for its immunosuppressive and other biological activities.

Jin-Soo Kim; Josef Souček; Josef Matoušek; Ronald T. Raines


Journal of Biological Chemistry | 1993

Bovine seminal ribonuclease produced from a synthetic gene

Jin-Soo Kim; Ronald T. Raines


Analytical Biochemistry | 1994

Peptide tags for a dual affinity fusion system

Jin-Soo Kim; Ronald T. Raines


FEBS Journal | 1994

A Misfolded but Active Dimer of Bovine Seminal Ribonuclease

Jin-Soo Kim; Ronald T. Raines


Developmental Cell | 2017

GATA Factor-Regulated Samd14 Enhancer Confers Red Blood Cell Regeneration and Survival in Severe Anemia

Kyle J. Hewitt; Koichi R. Katsumura; Daniel R. Matson; Prithvia Devadas; Nobuyuki Tanimura; Alexander S. Hebert; Joshua J. Coon; Jin-Soo Kim; Colin N. Dewey; Sunduz Keles; Siyang Hao; Robert F. Paulson; Emery H. Bresnick

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Ronald T. Raines

University of Wisconsin-Madison

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Josef Matoušek

Academy of Sciences of the Czech Republic

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Josef Souček

Charles University in Prague

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Hyunju Cha

Seoul National University

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Kyuho Shim

Seoul National University

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