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Dive into the research topics where Jiri Mareda is active.

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Featured researches published by Jiri Mareda.


Nature Chemistry | 2010

Experimental evidence for the functional relevance of anion– π interactions

Ryan E. Dawson; Andreas Hennig; Dominik P. Weimann; Daniel Emery; Velayutham Ravikumar; Javier Montenegro; Toshihide Takeuchi; Sandro Gabutti; Marcel Mayor; Jiri Mareda; Christoph A. Schalley; Stefan Matile

Attractive in theory and confirmed to exist, anion-pi interactions have never really been seen at work. To catch them in action, we prepared a collection of monomeric, cyclic and rod-shaped naphthalenediimide transporters. Their ability to exert anion-pi interactions was demonstrated by electrospray tandem mass spectrometry in combination with theoretical calculations. To relate this structural evidence to transport activity in bilayer membranes, affinity and selectivity sequences were recorded. pi-acidification and active-site decrowding increased binding, transport and chloride > bromide > iodide selectivity, and supramolecular organization inverted acetate > nitrate to nitrate > acetate selectivity. We conclude that anion-pi interactions on monomeric surfaces are ideal for chloride recognition, whereas their supramolecular enhancement by pi,pi-interactions appears perfect to target nitrate. Chloride transporters are relevant to treat channelopathies, and nitrate sensors to monitor cellular signaling and cardiovascular diseases. A big impact on organocatalysis can be expected from the stabilization of anionic transition states on chiral pi-acidic surfaces.


Science | 2006

Photoproduction of Proton Gradients with π-Stacked Fluorophore Scaffolds in Lipid Bilayers

Sheshanath V. Bhosale; Adam L. Sisson; Pinaki Talukdar; Alexandre Fürstenberg; Natalie Banerji; Eric Vauthey; Guillaume Bollot; Jiri Mareda; Cornelia Röger; Frank Würthner; Naomi Sakai; Stefan Matile

Rigid p-octiphenyl rods were used to create helical tetrameric π-stacks of blue, red-fluorescent naphthalene diimides that can span lipid bilayer membranes. In lipid vesicles containing quinone as electron acceptors and surrounded by ethylenediaminetetraacetic acid as hole acceptors, transmembrane proton gradients arose through quinone reduction upon excitation with visible light. Quantitative ultrafast and relatively long-lived charge separation was confirmed as the origin of photosynthetic activity by femtosecond fluorescence and transient absorption spectroscopy. Supramolecular self-organization was essential in that photoactivity was lost upon rod shortening (from p-octiphenyl to biphenyl) and chromophore expansion (from naphthalene diimide to perylene diimide). Ligand intercalation transformed the photoactive scaffolds into ion channels.


Chemistry: A European Journal | 2009

Anion–π Slides for Transmembrane Transport

Jiri Mareda; Stefan Matile

The recognition and transport of anions is usually accomplished by hydrogen bonding, ion pairing, metal coordination, and anion-dipole interactions. Here, we elaborate on the concept to use anion-pi interactions for this purpose. Different to the popular cation-pi interactions, applications of the complementary pi-acidic surfaces do not exist. This is understandable because the inversion of the aromatic quadrupole moment to produce pi-acidity is a rare phenomenon. Here, we suggest that pi-acidic aromatics can be linked together to produce an unbendable scaffold with multiple binding sites for anions to move along across a lipid bilayer membrane. The alignment of multiple anion-pi sites is needed to introduce a cooperative multi-ion hopping mechanism. Experimental support for the validity of the concept comes from preliminary results with oligonaphthalenediimide (O-NDI) rods. Predicted by strongly positive facial quadrupole moments, the cooperativity and chloride selectivity found for anion transport by O-NDI rods were consistent with the existence of anion-pi slides. The proposed mechanism for anion transport is supported by DFT results for model systems, as well as MD simulations of rigid O-NDI rods. Applicability of anion-pi slides to achieve electroneutral photosynthesis is elaborated with the readily colorizable oligoperylenediimide (O-PDI) rods. To clarify validity, scope and limitations of these concepts, a collaborative research effort will be needed to address by computer modeling and experimental observations the basic questions in simple model systems and to design advanced multifunctional anion-pi architectures.


Angewandte Chemie | 2011

Ditopic Ion Transport Systems: Anion–π Interactions and Halogen Bonds at Work

Andreas Vargas Jentzsch; Daniel Emery; Jiri Mareda; Pierangelo Metrangolo; Giuseppe Resnati; Stefan Matile

Single-atom exchange series are introduced to extract the individual contributions of halogen bonds and anion–π interactions to the transport of anions across lipid bilayer membranes (see picture). Known cation binding sites are used for counterion activation of the neutral calix[4]arene transporters. The experimental evidence for anion transport with halogen bonds is unprecedented.


Chemistry: A European Journal | 2009

Enantioselective Organocatalytic Conjugate Addition of Aldehydes to Vinyl Sulfones and Vinyl Phosphonates as Challenging Michael Acceptors

Sarah Sulzer-Mossé; Alexandre Alexakis; Jiri Mareda; Guillaume Bollot; Gérald Bernardinelli; Yaroslav Filinchuk

Chiral framework: Chiral amines with pyrrolidine frameworks catalyze the enantioselective conjugate addition of a wide range of aldehydes to various vinyl sulfones and vinyl phosphonates in high yields and with enantioselectivities up to >99 % ee (see scheme). The high versatility of the Michael adducts is exemplified by various functionalizations with conservation of the optical purity.Chiral amines with a pyrrolidine framework catalyze the enantioselective conjugate addition of a broad range of aldehydes to various vinyl sulfones and vinyl phosphonates in high yields and with enantioselectivities up to >99 % ee. This novel process provides synthetically useful chiral gamma-gem-sulfonyl or phosphonyl aldehydes which can be widely functionalized with retention of the enantiomeric excess. Mechanistic insights including DFT calculations are explored in detail.


Organic and Biomolecular Chemistry | 2007

Rigid-rod anion–π slides for multiion hopping across lipid bilayers

Virginie Gorteau; Guillaume Bollot; Jiri Mareda; Stefan Matile

Shape-persistent oligo-p-phenylene-N,N-naphthalenediimide (O-NDI) rods are introduced as anion-pi slides for chloride-selective multiion hopping across lipid bilayers. Results from end-group engineering and covalent capture as O-NDI hairpins suggested that self-assembly into transmembrane O-NDI bundles is essential for activity. A halide topology VI (Cl > F > Br approximately I, Cl/Br approximately Cl/I > 7) implied strong anion binding along the anion-pi slides with relatively weak contributions from size exclusion (F >or= OAc). Anomalous mole fraction effects (AMFE) supported the occurrence of multiion hopping along the pi-acidic O-NDI rods. The existence of anion-pi interactions was corroborated by high-level ab initio and DFT calculations. The latter revealed positive NDI quadrupole moments far beyond the hexafluorobenzene standard. Computational studies further suggested that anion binding occurs at the confined, pi-acidic edges of the sticky NDI surface and is influenced by the nature of the phenyl spacer between two NDIs. With regard to methods development, a detailed analysis of the detection of ion selectivity with the HPTS assay including AMFE in vesicles is provided.


Angewandte Chemie | 2013

Catalysis with Anion–π Interactions

Yingjie Zhao; Yuya Domoto; Edvinas Orentas; César Beuchat; Daniel Emery; Jiri Mareda; Naomi Sakai; Stefan Matile

The conclusion is inevitable: Increasing stabilization of an anionic transition state with increasing π-acidity of the catalyst is observed; thus, anion-π interactions can contribute to catalysis.


Journal of the American Chemical Society | 2009

Ordered and oriented supramolecular n/p-heterojunction surface architectures: completion of the primary color collection

Ravuri S. K. Kishore; Oksana Kel; Natalie Banerji; Daniel Emery; Guillaume Bollot; Jiri Mareda; Alberto Gomez-Casado; Pascal Jonkheijm; Jurriaan Huskens; Plinio Maroni; Michal Borkovec; Eric Vauthey; Naomi Sakai; Stefan Matile

In this study, we describe synthesis, characterization, and zipper assembly of yellow p-oligophenyl naphthalenediimide (POP-NDI) donor-acceptor hybrids. Moreover, we disclose, for the first time, results from the functional comparison of zipper and layer-by-layer (LBL) assembly as well as quartz crystal microbalance (QCM), atomic force microscopy (AFM), and molecular modeling data on zipper assembly. Compared to the previously reported blue and red NDIs, yellow NDIs are more pi-acidic, easier to reduce, and harder to oxidize. The optoelectronic matching achieved in yellow POP-NDIs is reflected in quantitative and long-lived photoinduced charge separation, comparable to their red and much better than their blue counterparts. The direct comparison of zipper and LBL assemblies reveals that yellow zippers generate more photocurrent than blue zippers as well as LBL photosystems. Continuing linear growth found in QCM measurements demonstrates that photocurrent saturation at the critical assembly thickness occurs because more charges start to recombine before reaching the electrodes and not because of discontinued assembly. The found characteristics, such as significant critical thickness, strong photocurrents, large fill factors, and, according to AFM images, smooth surfaces, are important for optoelectronic performance and support the existence of highly ordered architectures.


Journal of the American Chemical Society | 2011

Self-Organizing Surface-Initiated Polymerization: Facile Access to Complex Functional Systems

Naomi Sakai; Marco Lista; Oksana Kel; Shin-ichiro Sakurai; Daniel Emery; Jiri Mareda; Eric Vauthey; Stefan Matile

Facile access to complex systems is crucial to generate the functional materials of the future. Herein, we report self-organizing surface-initiated polymerization (SOSIP) as a user-friendly method to create ordered as well as oriented functional systems on transparent oxide surfaces. In SOSIP, self-organization of monomers and ring-opening disulfide exchange polymerization are combined to ensure the controlled growth of the polymer from the surface. This approach provides rapid access to thick films with smooth, reactivatable surfaces and long-range order with few defects and high precision, including panchromatic photosystems with oriented four-component redox gradients. The activity of SOSIP architectures is clearly better than that of disordered controls.


Tetrahedron | 1985

Theoretical studies of halocarbene cycloaddition selectivities : A new interpretation of negative activation energies and entropy control of selectivity

K. N. Houk; Nelson G. Rondan; Jiri Mareda

Abstract Ab initio RHF calculations with the 3–21G basis set have been carried out on cycloadditions of CF2 and CCl2 with ethylene. Although π-complex intermediates are predicted for both reactions at this level, MP2/3-21G calculations imply that there are no complexes in reactions of CCl2 or more reactive carbenes with ethylene or substituted alkenes. Nevertheless, negative activation energies can be observed, since ΔG reaches a maximum due to the increase in —TΔS for these bimolecular reactions. The apparent “entropy control” for reactive carbenes results from the rapid decrease in ΔH. As the reactivity of the alkene increases, the transition state shifts to an earlier point on the free energy surface, where —TΔS‡ is lower, but ΔH‡ is higher than for less reactive alkenes. Model potentials are developed for ΔH and —TΔS which reproduce experimental behavior, without the assumption of intermediates.

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K. N. Houk

University of California

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