Joana Moreira

The effects of surface properties on Escherichia coli adhesion are modulated by shear stress.

The adhesion of Escherichia coli to glass and polydimethylsiloxane (PDMS) at different flow rates (between 1 and 10 ml s(-1)) was monitored in a parallel plate flow chamber in order to understand the effect of surface properties and hydrodynamic conditions on adhesion. Computational fluid dynamics was used to assess the applicability of this flow chamber in the simulation of the hydrodynamics of relevant biomedical systems. Wall shear stresses between 0.005 and 0.07 Pa were obtained and these are similar to those found in the circulatory, reproductive and urinary systems. Results demonstrate that E. coli adhesion to hydrophobic PDMS and hydrophilic glass surfaces is modulated by shear stress with surface properties having a stronger effect at the lower and highest flow rates tested and with negligible effects at intermediate flow rates. These findings suggest that when expensive materials or coatings are selected to produce biomedical devices, this choice should take into account the physiological hydrodynamic conditions that will occur during the utilization of those devices.

96-well microtiter plates for biofouling simulation in biomedical settings

Microtiter plates with 96 wells are routinely used in biofilm research mainly because they enable high-throughput assays. These platforms are used in a variety of conditions ranging from static to dynamic operation using different shaking frequencies and orbital diameters. The main goals of this work were to assess the influence of nutrient concentration and flow conditions on biofilm formation by Escherichia coli in microtiter plates and to define the operational conditions to be used in order to simulate relevant biomedical scenarios. Assays were performed in static mode and in incubators with distinct orbital diameters using different concentrations of glucose, peptone and yeast extract. Computational fluid dynamics (CFD) was used to simulate the flow inside the wells for shaking frequencies ranging from 50 to 200 rpm and orbital diameters from 25 to 100 mm. Higher glucose concentrations enhanced adhesion of E. coli in the first 24 h, but variation in peptone and yeast extract concentration had no significant impact on biofilm formation. Numerical simulations indicate that 96-well microtiter plates can be used to simulate a variety of biomedical scenarios if the operating conditions are carefully set.

Flow cells as quasi-ideal systems for biofouling simulation of industrial piping systems

Semi-circular flow cells are often used to simulate the formation of biofilms in industrial pipes with circular section because their planar surface allows easy sampling using coupons. Computational fluid dynamics was used to assess whether the flow in pipe systems can be emulated by the semi-circular flow cells that are used to study biofilm formation. The results show that this is the case for Reynolds numbers (Re) ranging from 10 to 1000 and 3500 to 10,000. A correspondence involving the friction factor was obtained in order to correlate any semi-circular flow cell to any circular pipe for Re between 10 and 100,000. The semi-circular flow cell was then used to assess experimentally the effect of Reynolds number (Re = 4350 and 6720) on planktonic cell concentration and biofilm formation using Escherichia coli JM109 (DE3). Lower planktonic cell concentrations and thicker biofilms (>1.2 mm) were obtained with the lower Re.

Macroscale versus microscale methods for physiological analysis of biofilms formed in 96-well microtiter plates

Microtiter plates with 96 wells have become one of the preferred platforms for biofilm studies mainly because they enable high-throughput assays. In this work, macroscale and microscale methods were used to study the impact of hydrodynamic conditions on the physiology and location of Escherichia coli JM109(DE3) biofilms formed in microtiter plates. Biofilms were formed in shaking and static conditions, and two macroscale parameters were assayed: the total amount of biofilm was measured by the crystal violet assay and the metabolic activity was determined by the resazurin assay. From the macroscale point of view, there were no statistically significant differences between the biofilms formed in static and shaking conditions. However, at a microscale level, the differences between both conditions were revealed using scanning electron microscopy (SEM). It was observed that biofilm morphology and spatial distribution along the wall were different in these conditions. Simulation of the hydrodynamic conditions inside the wells at a microscale was performed by computational fluid dynamics (CFD). These simulations showed that the shear strain rate was unevenly distributed on the walls during shaking conditions and that regions of higher shear strain rate were obtained closer to the air/liquid interface. Additionally, it was shown that wall regions subjected to higher shear strain rates were associated with the formation of biofilms containing cells of smaller size. Conversely, regions with lower shear strain rate were prone to have a more uniform spatial distribution of adhered cells of larger size. The results presented on this work highlight the wealth of information that may be gathered by complementing macroscale approaches with a microscale analysis of the experiments.

The combined effects of shear stress and mass transfer on the balance between biofilm and suspended cell dynamics

This work investigates the effect of shear stress and mass transfer on the development of biofilms in a flow cell that mimics industrial piping. The shear stress and maximum flow velocity were estimated by computational fluid dynamics and the external mass transfer coefficient was calculated using empirical correlations for Reynolds numbers ranging from 100 to 10,000. The effect of two flow rates on the development of Escherichia coli biofilms under turbulent flow conditions was assessed and it was observed that biofilm formation was favored at the lowest flow rate. Additionally, estimations of the shear stress and external mass transfer coefficient indicate that both parameters increase with increasing flow rates. Thus, it seems that biofilm formation was being controlled by the shear stress that promoted biofilm erosion/sloughing and not by mass transfer which would potentiate biofilm growth. Our results indicate that not only efficient pre-treatment units are required on water recirculation loops in order to reduce the effective concentration of bacteria and nutrients, but also that high flow rates are preferred at all times to reduce the buildup of bacterial biofilms. For instance, high flow rates should be used during cleaning and disinfection cycles because the increase in shear stress will promote biofilm detachment and also potentiate the effect of biocides and other cleaning agents due to the increased mass transfer from the bulk solution to the surface of the biofilm.

Escherichia coli adhesion to surfaces–a thermodynamic assessment

Several studies have tried to correlate bacterial adhesion with the physicochemical properties of the surface with limited success. Most often, the obtained correlations seem to be only applicable to a particular set of experimental conditions making it difficult to obtain guidelines for the design of antibiofouling surfaces. The ratio between Lifshitz van der Waals apolar component and the electron donor component (γLW/γ−) was recently shown to correlate with bacterial adhesion to the surfaces of ship hulls and heat exchangers. In this work, four materials with biomedical application (polystyrene, poly-l-lactide, cellulose acetate, and polydimethylsiloxane) and glass were characterized and Escherichia coli adhesion to those materials was assayed with a parallel-plate flow chamber operating in physiological shear stress conditions. Adhesion was correlated with the γLW/γ− ratio, further extending the application range tested on the original study. Additionally, results from other studies were also evaluated to confirm the applicability of this correlation to other surfaces, microorganisms, and experimental conditions. Results show that bacterial adhesion is reduced in surfaces with lower γLW/γ−and enhanced otherwise. This finding may be helpful in the design of new coatings by controlling γLW/γ− or in the selection of existing materials according to the desired application.

Biofilm Localization in the Vertical Wall of Shaking 96-Well Plates

Microtiter plates with 96 wells are being increasingly used for biofilm studies due to their high throughput, low cost, easy handling, and easy application of several analytical methods to evaluate different biofilm parameters. These methods provide bulk information about the biofilm formed in each well but lack in detail, namely, regarding the spatial location of the biofilms. This location can be obtained by microscopy observation using optical and electron microscopes, but these techniques have lower throughput and higher cost and are subjected to equipment availability. This work describes a differential crystal violet (CV) staining method that enabled the determination of the spatial location of Escherichia coli biofilms formed in the vertical wall of shaking 96-well plates. It was shown that the biofilms were unevenly distributed on the wall with denser cell accumulation near the air-liquid interface. The results were corroborated by scanning electron microscopy and a correlation was found between biofilm accumulation and the wall shear strain rates determined by computational fluid dynamics. The developed method is quicker and less expensive and has a higher throughput than the existing methods available for spatial location of biofilms in microtiter plates.

Targeting the MDM2-p53 protein-protein interaction with prenylchalcones: Synthesis of a small library and evaluation of potential antitumor activity

Prenylation of several bioactive scaffolds is a very interesting strategy used in Medicinal Chemistry in order to improve biological/pharmacological effects. A small library of prenylchalcones was synthesized and evaluated for the ability to inhibit the MDM2-p53 interaction using a yeast-based assay. The capacity of all synthesized prenylchalcones and their non-prenylated precursors to inhibit the growth of human colon tumor HCT116 cells was also evaluated. The obtained results led to the identification of a hit compound, prenylchalcone 2e, which behaved as potential inhibitor of the MDM2-p53 interaction in yeast, and showed improved cytotoxicity against human tumor cells expressing wild-type p53, including liver hepatocellular carcinoma HepG2, breast adenocarcinoma MCF-7, and malignant melanoma A375 cells. In colon cancer cells, it was also shown that the growth inhibitory effect of prenylchalcone 2e was associated with the induction of cell cycle arrest, apoptosis, and increased protein expression levels of p53 transcriptional targets. Moreover, computational docking studies were performed in order to predict docking poses and residues involved in the MDM2-p53 potential interaction.

Surface conditioning with Escherichia coli cell wall components can reduce biofilm formation by decreasing initial adhesion

Bacterial adhesion and biofilm formation on food processing surfaces pose major risks to human health. Non-efficient cleaning of equipment surfaces and piping can act as a conditioning layer that affects the development of a new biofilm post-disinfection. We have previously shown that surface conditioning with cell extracts could reduce biofilm formation. In the present work, we hypothesized that E. coli cell wall components could be implicated in this phenomena and therefore mannose, myristic acid and palmitic acid were tested as conditioning agents. To evaluate the effect of surface conditioning and flow topology on biofilm formation, assays were performed in agitated 96-well microtiter plates and in a parallel plate flow chamber (PPFC), both operated at the same average wall shear stress (0.07 Pa) as determined by computational fluid dynamics (CFD). It was observed that when the 96-well microtiter plate and the PPFC were used to form biofilms at the same shear stress, similar results were obtained. This shows that the referred hydrodynamic feature may be a good scale-up parameter from high-throughput platforms to larger scale flow cell systems as the PPFC used in this study. Mannose did not have any effect on E. coli biofilm formation, but myristic and palmitic acid inhibited biofilm development by decreasing cell adhesion (in about 50%). These results support the idea that in food processing equipment where biofilm formation is not critical below a certain threshold, bacterial lysis and adsorption of cell components to the surface may reduce biofilm buildup and extend the operational time.