Joanna Dames

Current developments in arbuscular mycorrhizal fungi research and its role in salinity stress alleviation: a biotechnological perspective

Abstract Arbuscular mycorrhizal fungi (AMF) form widespread symbiotic associations with 80% of known land plants. They play a major role in plant nutrition, growth, water absorption, nutrient cycling and protection from pathogens, and as a result, contribute to ecosystem processes. Salinity stress conditions undoubtedly limit plant productivity and, therefore, the role of AMF as a biological tool for improving plant salt stress tolerance, is gaining economic importance worldwide. However, this approach requires a better understanding of how plants and AMF intimately interact with each other in saline environments and how this interaction leads to physiological changes in plants. This knowledge is important to develop sustainable strategies for successful utilization of AMF to improve plant health under a variety of stress conditions. Recent advances in the field of molecular biology, “omics” technology and advanced microscopy can provide new insight about these mechanisms of interaction between AMF and plants, as well as other microbes. This review mainly discusses the effect of salinity on AMF and plants, and role of AMF in alleviation of salinity stress including insight on methods for AMF identification. The focus remains on latest advancements in mycorrhizal research that can potentially offer an integrative understanding of the role of AMF in salinity tolerance and sustainable crop production.

Arbuscular mycorrhizal inoculation improves growth and antioxidative response of Jatropha curcas (L.) under Na2SO4 salt stress

This study investigated the effect of arbuscular mycorrhizal (AM) fungal consortia on growth, photosynthetic pigments, solutes concentration (e.g., sugars and proline), and antioxidant responses at different levels of Na2SO4 stress (0–0.5%, w:w) in potted culture of Jatropha. Results showed that increasing salt levels caused a significant reduction in survival (%), growth parameters, leaf relative water content (LRWC) (%), and chlorophyll content with an increase in electrolyte leakage (%) and lipid peroxidation of membranes of Jatropha. AM inoculation improved biomass yields as well as other physiological parameters (LRWC (%), chlorophyll, proline, and soluble sugar) of salt-stressed Jatropha over noninoculated plants. Tolerance index of Jatropha was higher with AM fungi than without at all salt levels; however, a decline in its value was recorded with increased salinity levels. AM inoculation also enhanced the activities of antioxidant enzymes (e.g., superoxide dismutase, peroxidase, ascorbate peroxidase, and glutathione reductase) and decreased oxidative damage to lipids. In conclusion, results indicate that AM inoculation was capable of alleviating the damage caused by salinity stress on Jatropha plants by reducing lipid peroxidation of membrane and membrane permeability and increasing the accumulation of solutes and antioxidant enzyme activity.

Detection of plant growth enhancing features in psychrotolerant yeasts from Patagonia (Argentina)

This study explores the biotechnological potential for plant production of twelve psychrotolerant yeasts strains from Northwest‐Patagonia. These strains were isolated from different substrates associated with Nothofagus sp. in native forests and Vaccinium sp. in a commercial plantation. Yeasts characterization was performed using in vitro assays to evaluate the production of auxin‐like compounds and siderophores, ability to solubilize inorganic phosphate and to reduce common plant pathogen growth. Strain YF8.3 identified as Aureobasidium pullullans was the main producer of auxin‐like and siderophores compounds. Phosphate solubilization was a characteristic observed by strains L8.12 and CRUB1775 identified as Holtermaniella takashimae and Candida maritima, respectively. Different yeast strains were able to inhibit the growth of Verticillium dahliae PPRI5569 and Pythium aphanidermatum PPRI 9009, but they all failed to inhibit the growth of Fusarium oxysporum PPRI5457. The present study, suggests that yeasts present in different environments in Northwestern‐Patagonian have physiological in vitro features which may influence plant growth. These results are promising for the developing of biological products based on Patagonian yeasts for plant production in cold‐temperate regions.

Effects of inoculating Lachnum and Cadophora isolates on the growth of Vaccinium corymbosum

The roots of ericaceous plants harbour a diversity of fungal taxa, which confer eco-physiological benefits to the host. Some of the fungi have been established to form ericoid mycorrhizal (ERM) associations and enhance plant growth in certain ericaceous genera. Although, Lachnum and Cadophora isolates have frequently been identified from the roots of this family, the status of their association and functional roles is still vague. The aims of this study were to identify Lachnum and Cadophora isolates; determine the root-fungal interactive structures formed in associations with Vaccinium corymbosum L. (blueberry) hosts and to examine inoculation effects of the fungal associates using several varieties of the blueberry. Lachnum and Cadophora were isolated and identified from Erica cerinthoides L. and Erica demmissa Klotzsch ex Benth using morphological and molecular techniques. Micropropagated blueberry varieties (Bluecrop, Elliott, Spartan, Chandler and Brightwell) were inoculated with respective fungi and plant growth evaluated. Both fungi colonised the roots and did not have any pathogenic effect. Lachnum isolate did not form any particular mycorrhizal structures whereas; Cadophora inoculated plants showed typical ericoid mycorrhizal coils. Inoculation with both fungi enhanced the shoot growth of Brightwell and Elliott varieties. However neutral effects were observed in the remaining varieties. In conclusion, Cadophora and Lachnum isolates have potential to promote growth of selected blueberry varieties.

The role of a plant/fungal consortium in the degradation of bituminous hard coal.

The sporadic growth of Cynodon dactylon was observed to occur directly on the surface of hard coal in dumps of the Witbank coal mining area of South Africa with the surface coal being broken down into a humic-like particulate material. Microorganism analysis of plants and rhizosphere material from the dumps revealed the presence of arbuscular mycorrhizal fungi and the coal solubilising fungus, Neosartorya fischeri. Studies established to replicate the dump environment revealed increased coal degradation in the form of humic acid production and an increase in small size particles as a result of Cynodon dactylon growth in association with arbuscular mycorrhizal fungi and Neosartorya fischeri. Results suggest that interactions between Cynodon dactylon, arbuscular mycorrhizal fungi, Neosartorya fischeri and other coal-degrading rhizosphere fungi could lead to the degradation of hard coal in situ and that the application of these organisms to discard dumps could be a novel method of coal dump rehabilitation.

Assimilation of organic and inorganic nutrients by Erica root fungi from the fynbos ecosystem.

Erica dominate the fynbos ecosystem, which is characterized by acidic soils that are rich in organic matter. The ericaceae associate with ericoid mycorrhizal (ERM) fungi for survival. In this study fungal biomass accumulation in vitro was used to determine nutrient utilisation of various inorganic and organic substrates. This is an initial step towards establishment of the ecological roles of typical ERM fungi and other root fungi associated with Erica plants, with regard to host nutrition. Meliniomyces sp., Acremonium implicatum, Leohumicola sp., Cryptosporiopsis erica, Oidiodendron maius and an unidentified Helotiales fungus were selected from fungi previously isolated and identified from Erica roots. Sole nitrogen sources ammonium, nitrate, arginine and Bovine Serum Albumin (BSA) were tested. Meliniomyces and Leohumicola species were able to utilise BSA effectively. Phosphorus nutrition was tested using orthophosphate, sodium inositol hexaphosphate and DNA. Most isolates preferred orthophosphate. Meliniomyces sp. and A. implicatum were able to accumulate significant biomass using DNA. Carbon utilisation was tested using glucose, cellobiose, carboxymethylcellulose, pectin and tannic acid substrates. All fungal isolates produced high biomass on glucose and cellobiose. The ability to utilize organic nutrient sources in culture, illustrates their potential role of these fungi in host nutrition in the fynbos ecosystem.

Genetic Approaches to Improve Salinity Tolerance in Plants

Abiotic stress tolerance in plants is gaining importance day by day. Different techniques are being employed to develop salt tolerant plants that directly or indirectly combat global food problems. Advanced comprehension of stress signal perception and transduction of associated molecular networks is now possible with the development in functional genomics and high throughput sequencing. In plant stress tolerance various genes, proteins, transcription factors, DNA histone-modifying enzymes, and several metabolites are playing very important role in stress tolerance. Determination of genomes of Arabidopsis, Oryza sativa spp. japonica cv. Nipponbare and integration of omics approach has augmented our knowledge pertaining to salt tolerance mechanisms of plants in natural environments. Application of transcriptomics, metabolomics, bioinformatics, and high-through-put DNA sequencing has enabled active analyses of regulatory networks that control abiotic stress responses. To unravel and exploit the function of genes is a major challenge of the post genomic era. This chapter therefore reviews the effect of salt stress on plants and the mechanism of salinity tolerance along with contributory roles of QTL, microRNA, microarray and proteomics.

Physiology and Spatio-temporal Relations of Nutrient Acquisition by Roots and Root Symbionts

Among the various functions of roots, nutrient acquisition (via soil uptake or through symbiotic relationships) is one of the most essential for land plants. Soil from natural and agricultural ecosystems may impede plant nutrient acquisition, by many factors such as mineral availabilities either in excess or deficient supply, depletion of organic matter, extreme variations in water supply, and many other physical and chemical features. In order to survive, plants need to undergo developmental and physiological mechanisms to cope with these extreme soil situations. Here we review how plants control nutrient acquisition by dynamically changing root architecture for improved soil space exploration, as well as altering cellular-level function for enhanced nutrient uptake, via apoplastic acidification, exudation of enzymes and metabolites (organic acids, secondary metabolites) and constantly changing the composition of transporters at the plasma membrane. These changes start with environmental cues which induce cell signaling and involve hormones and coordinated regulatory genes networks that drive the root’s developmental plasticity as well as the cell’s biochemical dynamics. Mutualistic root symbioses, such as mycorrhizae and rhizobial-induced nodulation, are also important to provide essential nutrients to the plant, which are tightly regulated in order to only occur at plant’s benefit. We also explore molecular mechanisms which roots have evolved to cope with nutritional, as well as other soil stresses, such as aluminium toxicity and heavy metals. Overall, understanding root dynamics under several environmental variables at different perspectives, from root architecture to biochemistry to genetic levels will allow us to better explore the spatial and temporal relations of roots with their mineral nutrient environment.

Variation in urease and β-glucosidase activities with soil depth and root density in a 'Cripp's Pink'/M7 apple orchard under conventional and organic management

The effects of conventional (CON; utilising synthetic fertiliser and herbicide) and organic (ORG; nutrients supplied in compost, weeds controlled with straw mulch) orchard floor management practices on depth-wise variation in urease and β-glucosidase activities in tree-row soils were compared in a Western Cape ‘Cripps Pink’/M7 apple orchard. Urease and β-glucosidase activities were determined spectrophotometrically in soils from five depth intervals from the walls of trenches excavated across the tree rows after seven years of treatment application. Soil pH, organic carbon, nitrate (NO3 ) and ammonium (NH4 ) nitrogen were also determined, as was root density. Enzyme activities were higher in the ORG than the CON topsoils but did not differ significantly (p = 0.05) at depths >30 cm. The positive effects of the ORG treatments were attributed to the liming effect and carbon and nitrogen contributions of the compost. Urease and β-glucosidase activities correlated strongly. Activities of both enzymes correlated significantly and positively with carbon, NO3− and pH, with urease correlated more strongly than β-glucosidase. Only urease correlated with root density. Organic orchard floor management practices may be more effective than CON practices in promoting microbial enzyme activities in the 0–30 cm soil depth intervals of Western Cape apple orchard soils.

Effect of conventional and organic orchard floor management practices on enzyme activities and microbial counts in a ‘Cripp's Pink’/M7 apple orchard

Organic (ORG) production practices are increasingly being used in South African apple orchards. Whether ORG orchard floor management practices differ in their effects on soil enzyme activities and microbial populations from conventional (CON) practices have not been adequately investigated, particularly with regard to soil chemical characteristics and orchard performance. To seek clarification a randomised field trial was carried out in the winter rainfall region of the Western Cape. In this trial ‘Cripps Pink’/M7 apple trees received straw mulch with compost (ORG) or synthetic fertiliser and herbicide (CON) in the tree rows. Soil microbial enzyme activities and microbial counts were determined by colorimetric assays and dilution plating, respectively. Activities of β-glucosidase, acid phosphatase and urease, and actinobacteria counts tended to be greater in the ORG than the CON treatments. Activities correlated positively with soil zinc and manganese concentrations and with leaf zinc, but negatively with soil copper. β-glucosidase and acid phosphatase activities also correlated negatively with ammonium and nitrate nitrogen in the soil, and with leaf nitrogen concentration. Yields decreased with increasing β-glucosidase and acid phosphatase activities. Therefore, although ORG practices increased soil microbiological activity relative to CON management, they did not improve yield.