Joël Chadoeuf

Investigations on distribution patterns in soil: basic and relative distributions of roots, channels and cracks

Abstract Krebs, M., Kretzschmar, A., Babel, U., Chadoeuf, J. and Goulard, M., 1994. Investigations on distribution patterns in soil: basic and relative distributions of roots, channels and cracks. In: A.J. Ringrose-Voase and G.S. Humphreys (Editors), Soil Micromorphology: Studies in Management and Genesis. Proc. IX Int. Working Meeting on Soil Micromorphology, Townsville, Australia, July 1992. Developments in Soil Science 22, Elsevier, Amsterdam, pp. 437–449.

Evidence of Cannibalism in Macrolophus pygmaeus, a Natural Enemy of Whiteflies

Cannibalism and the effects of host plant, sex, time and food resources on its expression were studied for the zoophagous mirid Macrolophus pygmaeus Wagner (Hemiptera: Miridae). Cannibalistic behaviour was studied by offering 5 conspecific larvae (first instar) to newly emerging adults. Four treatments were studied: without water, with water only, with a host plant (tobacco) and with both a host plant and prey (eggs of Ephestia kuehniella). Cannibalism was observed in all treatments. In the “host plant + eggs of E. kuehniella” treatment, very few individuals displayed cannibalistic behaviour. The proportion of cannibalism was only reduced when eggs of E. kuehniella were offered. Water (free or via a host plant) was very important for both survival and feeding. The cannibalistic behaviour of M. pygmaeus should be taken into account when planning a release strategy in the context of biological control.

Random Boolean Functions: Non-Parametric Estimation of the Intensity. Application to Soil Surface Roughness

A non-parametric estimation method is proposed for the intensity of the Poisson process associated to a Boolean random function. The case studied is that of marks being half-spheres as primary functions, these half-spheres lying on a given horizontal plane. The proposed method is derived from the method presented in Gyorfi, Hardle, Sarda et Vieu [1989] for the case of time series. An application in soil science is presented.

Functional relationships between plant feeding and prey feeding for a zoophytophagous bug

The consumption of plants by the zoophytophagous bug Macrolophus pygmaeus Rambur (Heteroptera : Miridae) in relation to the presence or absence of prey is monitored for 7 days. Tobacco plants enriched with 15N, a stable, nonradioactive isotope of nitrogen, are used for characterization. In the absence of prey, the relationship between time and 15N content (which equates to plant feeding) is linear, with a constant daily accumulation of 15N; however, if prey are available, the mathematical relationship becomes curvilinear. From day 1 to day 5, feeding on plants is independent of the consumption of prey. The rate of 15N accumulation decreases in the presence of prey after day 5, whereas the number of prey eaten remains unchanged.

Testing local dependence of spatial structures on images

Associations between two spatial processes can be due to a real dependence between the two processes or to the dependence on common underlying variables. We propose to test the existence of a real dependence by use of local tests, leading to a global test of real dependence and a map of local interactions. We present first how classical interaction tests based on random rotations between completely observed processes such as those developed by Berman (Berman. Appl. Statist. (1986) 35, 54–62), can be integrated in local analyses. For this purpose, tests are first performed locally, and the distribution of their p‐values is then compared to the corresponding value under the null hypothesis. A similar approach is proposed to test non‐stationarity of a point pattern by using distance statistics popularized by Diggle (Diggle. Statistical Analysis of Spatial Point Patterns. (1983) Academic Press, New York). The problem of testing the interaction between a random field and a censoring area pattern process is discussed and an approach similar to the preceding ones is then proposed. The methods are mainly applied to agricultural examples but they can be applied to any microscopical images for which one wishes to analyse the spatial structure.

The Spatial Distribution of Mustelidae in France

We estimated the spatial distribution of 6 Mustelidae species in France using the data collected by the French national hunting and wildlife agency under the “small carnivorous species logbooks” program. The 1500 national wildlife protection officers working for this agency spend 80% of their working time traveling in the spatial area in which they have authority. During their travels, they occasionally detect dead or living small and medium size carnivorous animals. Between 2002 and 2005, each car operated by this agency was equipped with a logbook in which officers recorded information about the detected animals (species, location, dead or alive, date). Thus, more than 30000 dead or living animals were detected during the study period. Because a large number of detected animals in a region could have been the result of a high sampling pressure there, we modeled the number of detected animals as a function of the sampling effort to allow for unbiased estimation of the species density. For dead animals -- mostly roadkill -- we supposed that the effort in a given region was proportional to the distance traveled by the officers. For living animals, we had no way to measure the sampling effort. We demonstrated that it was possible to use the whole dataset (dead and living animals) to estimate the following: (i) the relative density -- i.e., the density multiplied by an unknown constant -- of each species of interest across the different French agricultural regions, (ii) the sampling effort for living animals for each region, and (iii) the relative detection probability for various species of interest.

Analyse de la Liaison entre un Processus de Galeries et la Fissuration d'un Sol

The interaction between nonstationary point and fibre processes is analysed. The point process is modelled as a nonstationary Poisson process. A simulation test of independence between the two processes is then performed. Finally, a simulation test of independence between the two processes given the distance between points and fibres is proposed. The analysis of the liaison between earthworm burrows and cracks at the soil surface illustrates the method.

Domestication rewired gene expression and nucleotide diversity patterns in tomato

Plant domestication has led to considerable phenotypic modifications from wild species to modern varieties. However, although changes in key traits have been well documented, less is known about the underlying molecular mechanisms, such as the reduction of molecular diversity or global gene co-expression patterns. In this study, we used a combination of gene expression and population genetics in wild and crop tomato to decipher the footprints of domestication. We found a set of 1729 differentially expressed genes (DEG) between the two genetic groups, belonging to 17 clusters of co-expressed DEG, suggesting that domestication affected not only individual genes but also regulatory networks. Five co-expression clusters were enriched in functional terms involving carbohydrate metabolism or epigenetic regulation of gene expression. We detected differences in nucleotide diversity between the crop and wild groups specific to DEG. Our study provides an extensive profiling of the rewiring of gene co-expression induced by the domestication syndrome in one of the main crop species.

PROPERTIES OF LENGTH ESTIMATION IN SPATIAL FIBRE MODELS

The paper is devoted to estimation variance problems when sampling in spatial statistics. Anisotropic fibre processes as defined in stochastic geometry are investigated using total projections. Relation to stereological methods based on sections is emphasized. Intensity estimators are studied and the technique of estimation variances evaluation is developed. Explicit results are obtained in the Boolean segment model. The theory is applied to compare several unbiased length intensity estimators of earthworm burrow systems.

Arthropods life cycle and temperature: Beyond isomorphy hypothesis

In poikilotherms, developmental time and adult lifespan are biological traits driven by temperature although their underlying physiological mechanisms differ. The developmental theory of ageing predicts a positive correlation between these two traits without confirming a genetic or causal relationship. The developmental rate isomorphy hypothesis established that the proportionality in the duration of each pre-imaginal stage with respect to total developmental time does not vary with temperature. This may have important evolutionary implications. We conducted an analysis with arthropods of agronomic interest to study if the hypothesis could be extended to the total lifespan of poikilotherms, including adult lifespan. We showed that isomorphy could be acceptable for a global description of this relationship. However a general model of power law type is more appropriate for characterizing the relationship between developmental time and adult lifespan. In this model, the shape of the curve is a constant characteristic, but the parameters that control it depend on the functional type of the arthropod (phytophagous, predator or parasitoid). Presumably this power law could be extended to all arthropods of agricultural interest, and more generally to all arthropod.