Johan Elmberg

Surveillance of influenza A virus in migratory waterfowl in northern Europe

Ducks may maintain influenza virus from 1 year to the next.

Effects of influenza A virus infection on migrating mallard ducks.

The natural reservoir of influenza A virus is waterfowl, particularly dabbling ducks (genus Anas). Although it has long been assumed that waterfowl are asymptomatic carriers of the virus, a recent study found that low-pathogenic avian influenza (LPAI) infection in Bewicks swans (Cygnus columbianus bewickii) negatively affected stopover time, body mass and feeding behaviour. In the present study, we investigated whether LPAI infection incurred ecological or physiological costs to migratory mallards (Anas platyrhynchos) in terms of body mass loss and staging time, and whether such costs could influence the likelihood for long-distance dispersal of the avian influenza virus by individual ducks. During the autumn migrations of 2002–2007, we collected faecal samples (n=10 918) and biometric data from mallards captured and banded at Ottenby, a major staging site in a flyway connecting breeding and wintering areas of European waterfowl. Body mass was significantly lower in infected ducks than in uninfected ducks (mean difference almost 20 g over all groups), and the amount of virus shed by infected juveniles was negatively correlated with body mass. There was no general effect of infection on staging time, except for juveniles in September, in which birds that shed fewer viruses stayed shorter than birds that shed more viruses. LPAI infection did not affect speed or distance of subsequent migration. The data from recaptured individuals showed that the maximum duration of infection was on average 8.3 days (s.e. 0.5), with a mean minimum duration of virus shedding of only 3.1 days (s.e. 0.1). Shedding time decreased during the season, suggesting that mallards acquire transient immunity for LPAI infection. In conclusion, deteriorated body mass following infection was detected, but it remains to be seen whether this has more long-term fitness effects. The short virus shedding time suggests that individual mallards are less likely to spread the virus at continental or intercontinental scales.

Ecosystem services provided by waterbirds

Ecosystem services are ecosystem processes that directly or indirectly benefit human well‐being. There has been much recent literature identifying different services and the communities and species that provide them. This is a vital first step towards management and maintenance of these services. In this review, we specifically address the waterbirds, which play key functional roles in many aquatic ecosystems, including as predators, herbivores and vectors of seeds, invertebrates and nutrients, although these roles have often been overlooked. Waterbirds can maintain the diversity of other organisms, control pests, be effective bioindicators of ecological conditions, and act as sentinels of potential disease outbreaks. They also provide important provisioning (meat, feathers, eggs, etc.) and cultural services to both indigenous and westernized societies. We identify key gaps in the understanding of ecosystem services provided by waterbirds and areas for future research required to clarify their functional role in ecosystems and the services they provide. We consider how the economic value of these services could be calculated, giving some examples. Such valuation will provide powerful arguments for waterbird conservation.

Ecology of spring-migrating Anatidae: a review

Spring migration is generally considered as a crucial period of the year for many birds, not the least due to its supposed importance for subsequent breeding success. By reviewing the existing literature for Anatidae (ducks, geese, and swans), we show that little is known about their ecology in spring, although some goose species are exceptions. Another general pattern is that the ecology of Anatidae at staging sites is particularly neglected. Existing studies tend to focus on questions dealing with acquisition of nutrient reserves, whereas almost nothing has been published about stopover habitats, time use, microhabitat use, foraging behaviour, food availability, food limitation, diet selection, and interspecific relationships. Besides summarising present knowledge, we identify taxonomic groups and topics for which gaps of knowledge appear the most evident, thereby also highlighting research needs for the future.

Reinventing the wheel : analysis of sexual dimorphism in body size

Sexual dimorphism in body size has received increasing scientific interest during the past decade. In most of the papers on the subject, the magnitude of sexual size dimorphism is expressed as some conversion of body size ratio. There are several possible flaws in using such ratios, however, the most serious one concers the scaling of body size and size differences between sexes. Using ratios may easily lead to wrong conclusions. In this paper we emphasize some fallacies related to ratios and present a less biased method, based on residuals of linear regression. This method is suggested to be used in comparative analyses of sexual size dimorphism.

Landscape level effects of modern forestry on bird communities in North Swedish boreal forests

We address effects of large-scale forestry on landscape structure and the structure and composition of boreal bird communities in North Sweden. Specifically, we ask: after controlling for the effect of patch size, forest age and tree species composition, is there any residual effect attributable to the reduction in area of old forest? Pairs of landscape blocks (25 by 25 km) were selected to maximize area difference in human-induced disturbance, clear-cut as opposed to semi-natural old forest.Median distance to natural edge (wetlands, open water) from randomly selected points in forest was 250 and 200 m in high and low impact landscapes, respectively, indicating a high degree of ‘natural’ fragmentation of the pristine boreal landscape in the area. By contrast, median distance to clear-cut in uncut forest was 750 and 100 m, respectively. Clear-cuts in high impact landscapes were disproportionally more common in areas with contiguous forest land than in areas with spatially disjunct forest, implicating that forestry increases natural fragmentation of the landscape by subdividing larger forest tracts.Point counts along forestry roads showed that species richness and relative abundance of forest birds were higher in landscapes with low forestry impact. These differences can partly be explained by differences in age composition of forest and composition of tree species. After controlling for patch size, forest age and tree species composition, a significant effect of forestry impact remained for Sibirian species and the Tree pipitAnthus trivialis. Our results thus imply that this group of species and the Tree pipit may be sensitive to forest fragmentation.In contrast to previous Finnish studies, we found relatively small negative effects on relative abundance of species hypothesized to be negatively affected by large-scale clear-cutting forestry. However, our picture of the present does not contradict results from Finnish long-term population studies. Five factors may account for this: 1) clear-cut areas are not permanently transformed into other land use types, 2) planted forests are not completely inhabitable for species preferring older forest, 3) the majority of species in the regional pool are habitat generalists, 4) the region studied is still extensively covered with semi-natural forest, and 5) our study area is relatively close to contiguous boreal forest in Russia, a potential source area for taiga species.

Relationships between species number, lake size and resource diversity in assemblages of breeding waterfowl

Breeding waterfowl, habitat diversity and food diversity were studied in 31 boreal lakes in Finland and Sweden. Lakes were 2-48 hectares in size, and had zero to eleven waterfowl species each. In a ...

Multiple gene segment reassortment between Eurasian and American lineages of influenza A virus (H6N2) in Guillemot (Uria aalge)

Summary.Guillemots banded in the northern Baltic Sea were screened for influenza A virus (IAV). Three out of 26 sampled birds tested positive by RT-PCR. Two of these were characterized as subtype H6N2. Phylogenetic analyses showed that five gene segments belonged to the American avian lineage of IAVs, whereas three gene segments belonged to the Eurasian lineage. Our findings indicate that avian IAVs may have a taxonomically wider reservoir spectrum than previously known and we present the first report of a chimeric avian IAV with genes of American and Eurasian origin in Europe.

Genome wide SNP discovery, analysis and evaluation in mallard (Anas platyrhynchos)

BackgroundNext generation sequencing technologies allow to obtain at low cost the genomic sequence information that currently lacks for most economically and ecologically important organisms. For the mallard duck genomic data is limited. The mallard is, besides a species of large agricultural and societal importance, also the focal species when it comes to long distance dispersal of Avian Influenza. For large scale identification of SNPs we performed Illumina sequencing of wild mallard DNA and compared our data with ongoing genome and EST sequencing of domesticated conspecifics. This is the first study of its kind for waterfowl.ResultsMore than one billion base pairs of sequence information were generated resulting in a 16× coverage of a reduced representation library of the mallard genome. Sequence reads were aligned to a draft domesticated duck reference genome and allowed for the detection of over 122,000 SNPs within our mallard sequence dataset. In addition, almost 62,000 nucleotide positions on the domesticated duck reference showed a different nucleotide compared to wild mallard. Approximately 20,000 SNPs identified within our data were shared with SNPs identified in the sequenced domestic duck or in EST sequencing projects. The shared SNPs were considered to be highly reliable and were used to benchmark non-shared SNPs for quality. Genotyping of a representative sample of 364 SNPs resulted in a SNP conversion rate of 99.7%. The correlation of the minor allele count and observed minor allele frequency in the SNP discovery pool was 0.72.ConclusionWe identified almost 150,000 SNPs in wild mallards that will likely yield good results in genotyping. Of these, ~101,000 SNPs were detected within our wild mallard sequences and ~49,000 were detected between wild and domesticated duck data. In the ~101,000 SNPs we found a subset of ~20,000 SNPs shared between wild mallards and the sequenced domesticated duck suggesting a low genetic divergence. Comparison of quality metrics between the total SNP set (122,000 + 62,000 = 184,000 SNPs) and the validated subset shows similar characteristics for both sets. This indicates that we have detected a large amount (~150,000) of accurately inferred mallard SNPs, which will benefit bird evolutionary studies, ecological studies (e.g. disentangling migratory connectivity) and industrial breeding programs.

The scientific basis for a new and sustainable management of migratory European ducks

Abstract It is an axiom in ecology that knowing the sheer number of individuals in a population is of very little help if the objective is to understand future and past changes in population size. Yet, this is exactly how migratory European ducks are monitored, many of which are important quarry species in several countries. We argue that present monitoring is insufficient to address objectives of wise use andsustainabilitysuchasthoseemphasisedinrecentmanagementdirectivesand multilateral international agreements. The two main problems are the almost total lack of reliable data on recruitment and mortality. We advocate a pan-European monitoring system based on undisputed scientific principles; i.e. a long-term, coordinated and standardised scheme that produces data about vital rates of duck populations as well as about harvest size. Data from such a scheme can be used by game biologists to produce predictive tools, thus providing a functional basis for management decisions for adaptive harvesting and conservation alike.