Johanna Eerola

Mitochondrial DNA polymerase gamma variants in idiopathic sporadic Parkinson disease

Objective: Dysfunction of mitochondrial DNA polymerase gamma (POLG) has been recently recognized as an important cause of inherited neurodegenerative diseases. We have reported dominant and recessive inheritance of parkinsonism, mitochondrial myopathy, and premature amenorrhea in five ethnically distinct families with POLG1 mutations. This prompted us to carry out a detailed analysis of the coding region and intron-exon boundaries of POLG1 in Finnish patients with idiopathic sporadic Parkinson disease (PD) and in nonparkinsonian controls. Methods: The coding region of POLG1 was analyzed in 140 Finnish patients with PD and their 127 spouses as age- and ethnically matched controls. Further, we analyzed the intragenic CAG-repeat region of POLG1 in 126 additional patients with nonparkinsonian neurologic disorders and in 516 Finnish population controls. Results: We found clustering of rare variants of the POLG1 CAG-repeat, encoding a polyglutamine tract, in Finnish patients with idiopathic PD as compared to their spouses (p = 0.003; OR 3.01, 95% CI 1.35 to 6.71), population controls (p = 0.001; OR 2.45, 95% CI 1.45 to 4.14), and patients with nonparkinsonian neurologic disorders (p = 0.05, OR 1.98, 95% CI 0.97 to 4.05). We found several amino acid substitutions, none of them associating with PD. These included a previously parkinsonism-associated POLG variant Y831C, found in one patient with PD, but also in five controls, suggesting that it is a neutral amino acid polymorphism. Conclusions: Our results suggest that POLG polyglutamine tract variants should be considered as a predisposing genetic factor in idiopathic sporadic Parkinson disease.

The tau H2 haplotype is almost exclusively Caucasian in origin.

We have assessed the distribution of the tau H1/H2 haplotype in the publicly available reference series of samples with representatives of most racial groups. This analysis shows that the H2 haplotype is probably exclusively Caucasian in origin and its marginal occurrence in other racial groups is likely to reflect admixture. We discuss this observation in terms of the origin of the H2 haplotype and the epidemiology of the tauopathies.

Conflicting Results Regarding the Semaphorin Gene (SEMA5A) and the Risk for Parkinson Disease

To the Editor: The strongest variant (rs7702187) associated with Parkinson disease (PD [MIM 168600]) reported in the whole-genome association study by Maraganore et al.1 was evaluated in two independent case-control series of patients from Finland and Taiwan, as were four other variants located within SEMA5A (MIM 609297). The Finnish series comprised 146 patients with sporadic PD (mean age 67.2 years, range 38–88 years; 41% women) and 135 neurologically normal, healthy control subjects (mean age 65.8 years, range 37–80 years; 64% women). All individuals were recruited from the neurological outpatient clinics of the Helsinki University Central Hospital and Seinajoki Central Hospital. The Taiwanese series consisted of 303 patients with sporadic PD (mean age 61.9 years, range 24–91 years; 46.2% women) and 171 control individuals (mean age 60.1 years, range 31–86 years; 43.9% women). Patients were selected from the neurological clinic of Chang-Gung Memorial Hospital. Individuals with evidence of secondary parkinsonism or with atypical features such as early dementia, ophthalmoplegia, early autonomic failure, and pyramidal signs were not included in this study. All patients included in the study fulfilled PD diagnosis criteria.2 All participants signed an informed consent form. Taqman Assays-by-Design SNP Genotyping Assays (Applied Biosystems) were employed for allelic discrimination of all SNPs. Differences in allele and genotype distributions were analyzed using the χ2 test, and two-tailed P values are presented. Haplotype frequency comparisons between cases and controls were performed with PHASE version 2.1 software.3 One thousand permutations were performed for each comparison. The COCAPHASE module of the UNPHASED statistical package was used for linkage-disequilibrium (LD) analyses.4 Power calculations were performed with PS version 2.1.30.5 Allele and genotype frequency information for each of the markers is shown in table 1. None of the markers showed any significant association with disease in the Finnish series. However, we were able to replicate the reported association with marker rs7702187 in the Taiwanese cohort (odds ratio [OR] = 1.53, 95% CI 1.12–2.10, P=.007). Genotype analysis showed that individuals homozygous for the A allele had a significantly decreased risk of PD compared with those heterozygous or homozygous for the T allele (OR = 0.60, 95% CI 0.41–0.88, P=.009). A significant association was also found for the rs3798097 marker, which is located in the 5′ UTR region of SEMA5A (OR for the C allele was 1.71, 95% CI 1.06–2.73, P=.025). Table 1 Genotype and Allele Frequency Distribution of the Polymorphisms Analyzed across SEMA5A on Chromosome 5 Both populations showed a complete lack of LD for any pairs of neighboring polymorphisms (all D′ values were <0.5, independently of diagnostic group). Haplotype frequency comparisons did not reveal any significant differences between patients and controls in the Finnish series (P=.901) or between patients and controls in the Taiwanese series (P=.091) (table 2). Table 2 Haplotype Frequency Distribution in Finnish and Taiwanese Series[Note] The present results point to differential risk effects of SEMA5A marker alleles across populations. In the Taiwanese population, we have found an associated risk in the same locus as the one reported elsewhere1 but in an opposite direction. That is, the at-risk allele that we report was found to be protective in the sample from Minnesota described by Maraganore et al.1 This could be due to the effect of LD between this polymorphism and another “true” risk variant within the gene. The lack of association shown in the Finnish population could be related to genetic heterogeneity, or, alternatively, the Finnish series might not be large enough to assess genes with modest effects (this sample has a 60% power to detect risks of 1.7, at α=0.05). The replication of an association with SEMA5A in a Taiwanese population makes it a good candidate for further analyses in different populations.

POLG1 polyglutamine tract variants associated with Parkinson's disease

A possible role of allelic variation of the mitochondrial DNA polymerase gamma (POLG1) gene in Parkinsons disease (PD) has been suggested. First, POLG1 missense mutations have been found in patients with familial parkinsonism and mitochondrial myopathy. Second, increased frequency of rare alleles of the POLG1 CAG-repeat (poly-Q) has been found in Finnish idiopathic apparently sporadic PD patients, but conflicting reports exist. The POLG1 poly-Q exhibits one major allele with 10 repeats (10Q, frequency >/=80%) and several less common alleles such as 11Q (frequency 6-9%), 6Q-9Q and 12Q-14Q (frequencies <4%). It is not known, whether the poly-Q variation modulates POLG1 function. Here we sequenced the poly-Q in 641 North American Caucasian PD patients and 292 controls. Caucasian literature controls were also used. Normal allele was defined either as 10/11Q or as 10Q according to the previous literature. The frequency of the non-10/11Q alleles in cases was not significantly different from the controls. Variant alleles defined as non-10Q were significantly increased in the PD patients compared to the North American controls (17.6% vs. 12.3%, p=0.004) as well as compared to the larger set of 897 controls (17.6% vs. 13.2%, p=0.0007). These results suggest that POLG1 poly-Q alleles other than the conserved 10Q allele may increase susceptibility to PD. This finding may be attributable to a beneficial function of the 10Q repeat protein or linkage disequilibrium between the 10Q allele and another variation within or close to POLG1. Other large case-control studies and analyses on functional differences of POLG1 poly-Q variants are warranted.

Association of Tau Haplotype-Tagging Polymorphisms with Parkinson’s Disease in Diverse Ethnic Parkinson’s Disease Cohorts

Background: The overlap in the clinical and pathological features of tauopathies and synucleinopathies raises the possibility that the tau protein may be important in Parkinson’s disease (PD) pathogenesis. Several MAPT polymorphisms that define the tau H1 haplotype have been investigated for an association with PD with conflicting results; however, two meta-analyses support an association between haplotype H1 and PD. Methods: In this study, we recruited 508 patients and 611 healthy controls from Greek, Finnish and Taiwanese populations. We examined the possible genetic role of variation within MAPT in PD using haplotype-tagging single polymorphisms (SNPs) in these ethnically different PD populations. Results: We identified a moderate association at SNP rs3785883 in the Greek cohort for both allele and genotype frequency (p = 0.01, p = 0.05, respectively) as well as for SNP rs7521 (genotype p = 0.02) and rs242557 (p = 0.01 genotypic, p = 0.04 allelic) in the Finnish population. There were no significant differences in genotype or allele distribution between cases and controls in the Taiwanese cohort. Conclusion: We failed to demonstrate a consistent association between the MAPT H1 haplotype (delineated by intron 9 ins/del) and PD in three ethnically diverse populations. However, the data presented here suggest that subhaplotypes of haplotype H1 may confer susceptibility to PD, and that either allelic heterogeneity or different haplotype composition explain the divergent haplotype results.

No Evidence for Shorter Leukocyte Telomere Length in Parkinson’s Disease Patients

Telomeres constitute the protective ends of chromosomes. They become shorter after each cell division, and therefore, telomere length is considered as an indicator of cellular aging. Interestingly, both inflammation and oxidative stress, which play a role in the etiology of Parkinsons disease (PD), may accelerate telomere shortening. Furthermore, it has been suggested that leukocyte telomere shortening may be accelerated in PD. To replicate the earlier findings, we analyzed telomere length of peripheral blood leukocytes in a sample of 131 PD patients (aged 66.8 ± 9.7 years) and 115 controls (aged 65.4 ± 9.8 years) from Finland. As expected, age associated significantly with telomere length (p = .01). However, telomere length did not differ significantly between PD patients and controls (p = .54). Furthermore, extremely short telomeres were not more frequent in PD patients than in controls, as suggested in an earlier study. Our results do not support the concept of accelerated leukocyte telomere shortening in PD.

Assessment of a DJ-1 (PARK7) polymorphism in Finnish PD

Mutations in DJ-1 are a cause of autosomal recessive parkinsonism. Polymorphism of genes implicated in hereditary forms of parkinsonism may be a predisposing factor in sporadic Parkinson’s disease (PD). The authors analyzed whether a polymorphism (g.168_185del) within exon 1 of DJ-1 contributes to the risk of sporadic PD in a Finnish case-control series. This gene does not play a major role in the genetic predisposition to PD in this population.

Confirmation of the protective effect of iNOS in an independent cohort of Parkinson disease

Nitric oxide is a biologic messenger molecule involved in a diverse range of physiologic processes. An exon 22 inducible nitric oxide synthase genotype has recently been reported to be protective against Parkinson disease in a European cohort. The authors confirm the protective effect of this genotype (OR = 0.5, 95% CI 0.27 to 0.93) in an independent Finnish case-control series.