John B. Parise

Mechanism of Carbon Dioxide Adsorption in a Highly Selective Coordination Network Supported by Direct Structural Evidence

Understanding the interactions between adsorbed gas molecules and a pore surface at molecular level is vital to exploration and attempts at rational development of gasselective nanoporous solids. Much current work focuses on the design of functionalized metal–organic frameworks (MOFs) or coordination networks (CNs) that selectively adsorb CO2. [1–9] While interactions between CO2 molecules and the p clouds of aromatic linkers in MOFs under ambient conditions have been explored theoretically, no direct structure evidence of such interactions are reported to date. Here we provide the first structural insight of such interactions in a porous calcium based CN using single-crystal X-ray diffraction methods, supported by powder diffraction coupled with differential scanning calorimetry (DSC-XRD), in situ IR/Raman spectroscopy, and molecular simulation data. We further postulate that such interactions are responsible for the high CO2/N2 adsorption selectivity, even in the case of a high relative humidity (RH). Our data suggest that the key interaction responsible for such selectivity, the room-temperature stability and the relative insensitivity to the RH of the CO2-CN adduct, is between two phenyl rings of the linker in the CN and the molecular quadrupole of CO2. The specific geometry of the linker molecule results in a “pocket” where carbon from the CO2 molecule is placed between two centroids of the aromatic ring. Our experimental confirmation of this variation on theoretically postulated interactions between CO2 and a phenyl ring will promote the search for other CNs containing phenyl ring pockets. Selective adsorption and sequestration of CO2 from sources of anthropogenic emissions, such as untreated waste from flue gas and products of the water gas shift reaction, is important to mitigate the growing level of atmospheric CO2. [10] Current separation methods use absorption in alkanolamine solutions, which are toxic, corrosive, and require significant energy for their regeneration. Hence microporous solid-state adsorbents, such as zeolites, hybrid zeolite–polymer systems, porous organic materials, and MOFs are proposed as alternatives, especially in combination with pressure swing processes. Rather than relying solely on tuning the pore diameters of microporous materials to select between gases based on size (the kinetic diameters of CO2, CH4 and N2 are 3.30, 3.76 3.64 , respectively ) selective separation relies on differences in electronic properties, such as the quadrupole moment and polarizability. Attempts to produce MOFs or CNs with adsorption properties competitive with those of commercially established aluminosilicate zeolites, relies on strategies that include pore surface modification with strongly polarizing functional groups, such as amines 7, 9,15] and desolvating metals centers 8, 16] to produce low-coordinated sites suitable for CO2 adsorption. The amine-functionalized materials offer a high selectivity toward CO2 adsorption, but a low effective surface area and thus, a low total uptake capacity. Strong interactions with polarizing functional groups, as well as with open metal sites presents other drawbacks including an increase in the costs for material regeneration. Furthermore, water effectively competes with CO2 at low-coordinated cation sites, impeding the performance of frameworks in commercial flue gas. We recently described a porous framework, CaSDB (SDB: sulfonyldibenzoate, compound 1) with a high CO2/N2 selectivity. At 0.15 bar of CO2 and 0.85 bar of N2, a typical composition of flue gas mixture from power plants, the selectivity is in the range of 48 to 85 at 298 K. CaSDB shows a reversible uptake of CO2 of 5.75 wt% at 273 K and 1 bar pressure and 4.37 wt% at room temperature, with heats of adsorption for CO2 and N2 of 31 and 19 kJmol , respectively. The as-synthesized compound contains not coordinated water molecules and is easily activated for gas adsorption by heating to 563 K in vacuum; remarkably the activated framework does not readsorb water, even if exposed to a RH greater than [*] A. M. Plonka, W. R. Woerner, Prof. Dr. J. B. Parise Department of Geosciences, Stony Brook University Stony Brook, NY 11794-2100 (USA) E-mail: john.parise@stonybrook.edu

Synthesis and characterization of a new structure of gas hydrate

Atoms and molecules <0.9 nm in diameter can be incorporated in the cages formed by hydrogen-bonded water molecules making up the crystalline solid clathrate hydrates. For these materials crystallographic structures generally fall into 3 categories, which are 2 cubic forms and a hexagonal form. A unique clathrate hydrate structure, previously known only hypothetically, has been synthesized at high pressure and recovered at 77 K and ambient pressure in these experiments. These samples contain Xe as a guest atom and the details of this previously unobserved structure are described here, most notably the host-guest ratio is similar to the cubic Xe clathrate starting material. After pressure quench recovery to 1 atmosphere the structure shows considerable metastability with increasing temperature (T <160 K) before reverting back to the cubic form. This evidence of structural complexity in compositionally similar clathrate compounds indicates that the reaction path may be an important determinant of the structure, and impacts upon the structures that might be encountered in nature.

Differential Pair Distribution Function Study of the Structure of Arsenate Adsorbed on Nanocrystalline γ-Alumina

Structural information is important for understanding surface adsorption mechanisms of contaminants on metal (hydr)oxides. In this work, a novel technique was employed to study the interfacial structure of arsenate oxyanions adsorbed on γ-alumina nanoparticles, namely, differential pair distribution function (d-PDF) analysis of synchrotron X-ray total scattering. The d-PDF is the difference of properly normalized PDFs obtained for samples with and without arsenate adsorbed, otherwise identically prepared. The real space pattern contains information on atomic pair correlations between adsorbed arsenate and the atoms on γ-alumina surface (Al, O, etc.). PDF results on the arsenate adsorption sample on γ-alumina prepared at 1 mM As concentration and pH 5 revealed two peaks at 1.66 Å and 3.09 Å, corresponding to As-O and As-Al atomic pair correlations. This observation is consistent with those measured by extended X-ray absorption fine structure (EXAFS) spectroscopy, which suggests a first shell of As-O at 1.69 ± 0.01 Å with a coordination number of ~4 and a second shell of As-Al at ~3.13 ± 0.04 Å with a coordination number of ~2. These results are in agreement with a bidentate binuclear coordination environment to the octahedral Al of γ-alumina as predicted by density functional theory (DFT) calculation.

Molten uranium dioxide structure and dynamics

Uranium dioxide (UO2) is the major nuclear fuel component of fission power reactors. A key concern during severe accidents is the melting and leakage of radioactive UO2 as it corrodes through its zirconium cladding and steel containment. Yet, the very high temperatures (>3140 kelvin) and chemical reactivity of molten UO2 have prevented structural studies. In this work, we combine laser heating, sample levitation, and synchrotron x-rays to obtain pair distribution function measurements of hot solid and molten UO2. The hot solid shows a substantial increase in oxygen disorder around the lambda transition (2670 K) but negligible U-O coordination change. On melting, the average U-O coordination drops from 8 to 6.7 ± 0.5. Molecular dynamics models refined to this structure predict higher U-U mobility than 8-coordinated melts. Levitation of molten uranium dioxide allowed structural determination of the solid and melt at high temperature. [Also see Perspective by Navrotsky] Containing the nuclear elephants foot Molten nuclear fuel composed of large amounts of uranium dioxide is extremely dangerous. Liquid UO2 has a high melting temperature and is very reactive, making it difficult to find a suitable sample container within which to study it. Skinner et al. bypassed the container and used instead a laser to heat beads of UO2 levitated in a synchrotron x-ray beam with inert gas. They found an unexpected increase in the fluidity of molten nuclear fuel caused by a fall in the number of oxygen atoms surrounding each uranium cation. These findings are important when considering how to contain nuclear fuel during an accident. Science, this issue p. 984

The structure of water around the compressibility minimum

Here we present diffraction data that yield the oxygen-oxygen pair distribution function, g(OO)(r) over the range 254.2-365.9 K. The running O-O coordination number, which represents the integral of the pair distribution function as a function of radial distance, is found to exhibit an isosbestic point at 3.30(5) Å. The probability of finding an oxygen atom surrounding another oxygen at this distance is therefore shown to be independent of temperature and corresponds to an O-O coordination number of 4.3(2). Moreover, the experimental data also show a continuous transition associated with the second peak position in g(OO)(r) concomitant with the compressibility minimum at 319 K.

Structure of the floating water bridge and water in an electric field

The floating water bridge phenomenon is a freestanding rope-shaped connection of pure liquid water, formed under the influence of a high potential difference (approximately 15 kV). Several recent spectroscopic, optical, and neutron scattering studies have suggested that the origin of the bridge is associated with the formation of anisotropic chains of water molecules in the liquid. In this work, high energy X-ray diffraction experiments have been performed on a series of floating water bridges as a function of applied voltage, bridge length, and position within the bridge. The two-dimensional X-ray scattering data showed no direction-dependence, indicating that the bulk water molecules do not exhibit any significant preferred orientation along the electric field. The only structural changes observed were those due to heating, and these effects were found to be the same as for bulk water. These X-ray scattering measurements are supported by molecular dynamics (MD) simulations which were performed under electric fields of 106 V/m and 109 V/m. Directional structure factor calculations were made from these simulations parallel and perpendicular to the E-field. The 106 V/m model showed no significant directional-dependence (anisotropy) in the structure factors. The 109 V/m model however, contained molecules aligned by the E-field, and had significant structural anisotropy.

Effect of ligand geometry on selective gas-adsorption: the case of a microporous cadmium metal organic framework with a V-shaped linker.

A microporous cadmium metal organic framework is synthesized and structurally characterized. The material possesses a 3-D framework with a 1-D sinusoidal chain and shows high selectivity for CO2 over N2. The selectivity is attributed to CO2 interacting with two phenyl rings of a V-shaped linker as estimated by the in situ XRD-DSC study.

Pressure induced topochemical polymerization of diiodobutadiyne: a single-crystal-to-single-crystal transformation

Diiodobutadiyne forms cocrystals with bis(pyridyl)oxalamides, based on halogen bonds between the pyridine groups of the host and the iodoalkynes of the guest. These interactions align the diyne for topochemical polymerization to form poly(diiododiacetylene) or PIDA. To induce polymerization, the crystals are subjected to pressures of 3.5 GPa or above. Previously, we reported spectroscopic evidence of this pressure-induced polymerization, but attempts to recover single crystals after pressure treatment were unsuccessful. Here we present direct structural evidence of clean single-crystal to single-crystal polymerization in these cocrystals. The structure of the polymer cocrystal was solved from single-crystal diffraction data and is supported by high pressure in situ Raman spectroscopy. Careful analysis of the structural changes suggests that increasing pressure changes the packing of host molecules, and that the flexibility of the pyridine ring orientation enables the polymerization. The new sigma bonds of the polymer form at the expense of the halogen bonds in the starting cocrystal; after polymerization, the iodine atoms are no longer ideally located for strong halogen bonding with the host.

The structure of liquid water up to 360 MPa from x-ray diffraction measurements using a high Q-range and from molecular simulation

X-ray diffraction measurements of liquid water are reported at pressures up to 360 MPa corresponding to a density of 0.0373 molecules per Å(3). The measurements were conducted at a spatial resolution corresponding to Q(max) = 16 Å(-1). The method of data analysis and measurement in this study follows the earlier benchmark results reported for water under ambient conditions having a density of 0.0333 molecules per Å(3) and Q(max) = 20 Å(-1) [J. Chem. Phys. 138, 074506 (2013)] and at 70 °C having a density of 0.0327 molecules per Å(3) and Q(max) = 20 Å(-1) [J. Chem. Phys. 141, 214507 (2014)]. The structure of water is very different at these three different T and P state points and thus they provide the basis for evaluating the fidelity of molecular simulation. Measurements show that at 360 MPa, the 4 waters residing in the region between 2.3 and 3 Å are nearly unchanged: the peak position, shape, and coordination number are nearly identical to their values under ambient conditions. However, in the region above 3 Å, large structural changes occur with the collapse of the well-defined 2nd shell and shifting of higher shells to shorter distances. The measured structure is compared to simulated structure using intermolecular potentials described by both first-principles methods (revPBE-D3) and classical potentials (TIP4P/2005, MB-pol, and mW). The DFT-based, revPBE-D3, method and the many-body empirical potential model, MB-pol, provide the best overall representation of the ambient, high-temperature, and high-pressure data. The revPBE-D3, MB-pol, and the TIP4P/2005 models capture the densification mechanism, whereby the non-bonded 5th nearest neighbor molecule, which partially encroaches the 1st shell at ambient pressure, is pushed further into the local tetrahedral arrangement at higher pressures by the more distant molecules filling the void space in the network between the 1st and 2nd shells.

Comment on 'Molecular arrangement in water: random but not quite'.

Accurate high energy x-ray diffraction data are presented on liquid water measured at room temperature. Sources of both systematic and statistical errors within the experiment are considered and data consistency checks are discussed. It is found that the resulting x-ray pair distribution function is smoothly varying in real space and shows no evidence of small peaks in the 3-5 Å region. Our results are in contrast to the recent findings reported in Petkov et al 2012 J. Phys.: Condens. Matter 24 155102.