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Featured researches published by John D. Clemens.


Lancet Infectious Diseases | 2013

5 year efficacy of a bivalent killed whole-cell oral cholera vaccine in Kolkata, India: a cluster-randomised, double-blind, placebo-controlled trial

Sujit K. Bhattacharya; Dipika Sur; Mohammad Ali; Suman Kanungo; Young Ae You; Byomkesh Manna; Binod Sah; Swapan Kumar Niyogi; Jin Kyung Park; Banwarilal Sarkar; Mahesh K. Puri; Deok Ryun Kim; Jacqueline L. Deen; Jan Holmgren; Rodney Carbis; Mandeep Singh Dhingra; Allan Donner; G. Balakrish Nair; Anna Lena Lopez; Thomas F. Wierzba; John D. Clemens

BACKGROUND Efficacy and safety of a two-dose regimen of bivalent killed whole-cell oral cholera vaccine (Shantha Biotechnics, Hyderabad, India) to 3 years is established, but long-term efficacy is not. We aimed to assess protective efficacy up to 5 years in a slum area of Kolkata, India. METHODS In our double-blind, cluster-randomised, placebo-controlled trial, we assessed incidence of cholera in non-pregnant individuals older than 1 year residing in 3933 dwellings (clusters) in Kolkata, India. We randomly allocated participants, by dwelling, to receive two oral doses of modified killed bivalent whole-cell cholera vaccine or heat-killed Escherichia coli K12 placebo, 14 days apart. Randomisation was done by use of a computer-generated sequence in blocks of four. The primary endpoint was prevention of episodes of culture-confirmed Vibrio cholerae O1 diarrhoea severe enough for patients to seek treatment in a health-care facility. We identified culture-confirmed cholera cases among participants seeking treatment for diarrhoea at a study clinic or government hospital between 14 days and 1825 days after receipt of the second dose. We assessed vaccine protection in a per-protocol population of participants who had completely ingested two doses of assigned study treatment. FINDINGS 69 of 31 932 recipients of vaccine and 219 of 34 968 recipients of placebo developed cholera during 5 year follow-up (incidence 2·2 per 1000 in the vaccine group and 6·3 per 1000 in the placebo group). Cumulative protective efficacy of the vaccine at 5 years was 65% (95% CI 52-74; p<0·0001), and point estimates by year of follow-up suggested no evidence of decline in protective efficacy. INTERPRETATION Sustained protection for 5 years at the level we reported has not been noted previously with other oral cholera vaccines. Established long-term efficacy of this vaccine could assist policy makers formulate rational vaccination strategies to reduce overall cholera burden in endemic settings. FUNDING Bill & Melinda Gates Foundation and the governments of South Korea and Sweden.


The New England Journal of Medicine | 2016

Efficacy of a Single-Dose, Inactivated Oral Cholera Vaccine in Bangladesh

Firdausi Qadri; Thomas F. Wierzba; Mohammad Ali; Fahima Chowdhury; Ashraful I. Khan; Amit Saha; Iqbal Ansary Khan; Muhammad Asaduzzaman; Afroza Akter; Arifuzzaman Khan; Yasmin Ara Begum; Taufiqur Rahman Bhuiyan; Farhana Khanam; Mohiul I. Chowdhury; Taufiqul Islam; Atique Iqbal Chowdhury; Anisur Rahman; Shah Alam Siddique; Young Ae You; Deok Ryun Kim; Ashraf Siddik; Nirod Chandra Saha; Alamgir Kabir; Alejandro Cravioto; Sachin N. Desai; Ajit Pal Singh; John D. Clemens

BACKGROUND A single-dose regimen of the current killed oral cholera vaccines that have been prequalified by the World Health Organization would make them more attractive for use against endemic and epidemic cholera. We conducted an efficacy trial of a single dose of the killed oral cholera vaccine Shanchol, which is currently given in a two-dose schedule, in an urban area in which cholera is highly endemic. METHODS Nonpregnant residents of Dhaka, Bangladesh, who were 1 year of age or older were randomly assigned to receive a single dose of oral cholera vaccine or oral placebo. The primary outcome was vaccine protective efficacy against culture-confirmed cholera occurring 7 to 180 days after dosing. Prespecified secondary outcomes included protective efficacy against severely dehydrating culture-confirmed cholera during the same interval, against cholera and severe cholera occurring 7 to 90 versus 91 to 180 days after dosing, and against cholera and severe cholera according to age at baseline. RESULTS A total of 101 episodes of cholera, 37 associated with severe dehydration, were detected among the 204,700 persons who received one dose of vaccine or placebo. The vaccine protective efficacy was 40% (95% confidence interval [CI], 11 to 60%; 0.37 cases per 1000 vaccine recipients vs. 0.62 cases per 1000 placebo recipients) against all cholera episodes, 63% (95% CI, 24 to 82%; 0.10 vs. 0.26 cases per 1000 recipients) against severely dehydrating cholera episodes, and 63% (95% CI, -39 to 90%), 56% (95% CI, 16 to 77%), and 16% (95% CI, -49% to 53%) against all cholera episodes among persons vaccinated at the age of 5 to 14 years, 15 or more years, and 1 to 4 years, respectively, although the differences according to age were not significant (P=0.25). Adverse events occurred at similar frequencies in the two groups. CONCLUSIONS A single dose of the oral cholera vaccine was efficacious in older children (≥5 years of age) and in adults in a setting with a high level of cholera endemicity. (Funded by the Bill and Melinda Gates Foundation and others; ClinicalTrials.gov number, NCT02027207.).


The Lancet | 2015

Feasibility and effectiveness of oral cholera vaccine in an urban endemic setting in Bangladesh: a cluster randomised open-label trial

Firdausi Qadri; Mohammad Ali; Fahima Chowdhury; Ashraful I. Khan; Amit Saha; Iqbal Ansary Khan; Yasmin Ara Begum; Taufi qur R Bhuiyan; Mohiul I. Chowdhury; Jasim Uddin; Jahangir Khan; Atique Iqbal Chowdhury; Anisur Rahman; Shah Alam Siddique; Muhammad Asaduzzaman; Afroza Akter; Arifuzzaman Khan; Young Ae You; Ashraf Siddik; Nirod Chandra Saha; Alamgir Kabir; Baizid Khoorshid Riaz; Shwapon Biswas; Farzana Begum; Leanne Unicomb; Stephen P. Luby; Alejandro Cravioto; John D. Clemens

BACKGROUND Cholera is endemic in Bangladesh with epidemics occurring each year. The decision to use a cheap oral killed whole-cell cholera vaccine to control the disease depends on the feasibility and effectiveness of vaccination when delivered in a public health setting. We therefore assessed the feasibility and protective effect of delivering such a vaccine through routine government services in urban Bangladesh and evaluated the benefit of adding behavioural interventions to encourage safe drinking water and hand washing to vaccination in this setting. METHODS We did this cluster-randomised open-label trial in Dhaka, Bangladesh. We randomly assigned 90 clusters (1:1:1) to vaccination only, vaccination and behavioural change, or no intervention. The primary outcome was overall protective effectiveness, assessed as the risk of severely dehydrating cholera during 2 years after vaccination for all individuals present at time of the second dose. This study is registered with ClinicalTrials.gov, number NCT01339845. FINDINGS Of 268,896 people present at baseline, we analysed 267,270: 94,675 assigned to vaccination only, 92,539 assigned to vaccination and behavioural change, and 80,056 assigned to non-intervention. Vaccine coverage was 65% in the vaccination only group and 66% in the vaccination and behavioural change group. Overall protective effectiveness was 37% (95% CI lower bound 18%; p=0·002) in the vaccination group and 45% (95% CI lower bound 24%; p=0·001) in the vaccination and behavioural change group. We recorded no vaccine-related serious adverse events. INTERPRETATION Our findings provide the first indication of the effect of delivering an oral killed whole-cell cholera vaccine to poor urban populations with endemic cholera using routine government services and will help policy makers to formulate vaccination strategies to reduce the burden of severely dehydrating cholera in such populations. FUNDING Bill & Melinda Gates Foundation.


Clinical Infectious Diseases | 2013

Herd Protection by a Bivalent Killed Whole-Cell Oral Cholera Vaccine in the Slums of Kolkata, India

Mohammad Ali; Dipika Sur; Young Ae You; Suman Kanungo; Binod Sah; Byomkesh Manna; Mahesh K. Puri; Thomas F. Wierzba; Allan Donner; G. Balakrish Nair; Sujit K. Bhattacharya; Mandeep Singh Dhingra; Jacqueline L. Deen; Anna Lena Lopez; John D. Clemens

BACKGROUND We evaluated the herd protection conferred by an oral cholera vaccine using 2 approaches: cluster design and geographic information system (GIS) design. METHODS Residents living in 3933 dwellings (clusters) in Kolkata, India, were cluster-randomized to receive either cholera vaccine or oral placebo. Nonpregnant residents aged≥1 year were invited to participate in the trial. Only the first episode of cholera detected for a subject between 14 and 1095 days after a second dose was considered. In the cluster design, indirect protection was assessed by comparing the incidence of cholera among nonparticipants in vaccine clusters vs those in placebo clusters. In the GIS analysis, herd protection was assessed by evaluating association between vaccine coverage among the population residing within 250 m of the household and the occurrence of cholera in that population. RESULTS Among 107 347 eligible residents, 66 990 received 2 doses of either cholera vaccine or placebo. In the cluster design, the 3-year data showed significant total protection (66% protection, 95% confidence interval [CI], 50%-78%, P<.01) but no evidence of indirect protection. With the GIS approach, the risk of cholera among placebo recipients was inversely related to neighborhood-level vaccine coverage, and the trend was highly significant (P<.01). This relationship held in multivariable models that also controlled for potentially confounding demographic variables (hazard ratio, 0.94 [95% CI, .90-.98]; P<.01). CONCLUSIONS Indirect protection was evident in analyses using the GIS approach but not the cluster design approach, likely owing to considerable transmission of cholera between clusters, which would vitiate herd protection in the cluster analyses. CLINICAL TRIALS REGISTRATION NCT00289224.


The Lancet Global Health | 2017

Incidence of invasive salmonella disease in sub-Saharan Africa: a multicentre population-based surveillance study

Florian Marks; Vera von Kalckreuth; Peter Aaby; Yaw Adu-Sarkodie; Muna Ahmed El Tayeb; Mohammad Ali; Abraham Aseffa; Stephen Baker; Holly M. Biggs; Morten Bjerregaard-Andersen; Robert F. Breiman; James I. Campbell; Leonard Cosmas; John A. Crump; Ligia Maria Cruz Espinoza; Jessica Deerin; Denise Dekker; Barry S. Fields; Nagla Gasmelseed; Julian T. Hertz; Nguyen Van Minh Hoang; Justin Im; Anna Jaeger; Hyon Jin Jeon; Leon Parfait Kabore; Karen H. Keddy; Frank Konings; Ralf Krumkamp; Benedikt Ley; Sandra Valborg Løfberg

Summary Background Available incidence data for invasive salmonella disease in sub-Saharan Africa are scarce. Standardised, multicountry data are required to better understand the nature and burden of disease in Africa. We aimed to measure the adjusted incidence estimates of typhoid fever and invasive non-typhoidal salmonella (iNTS) disease in sub-Saharan Africa, and the antimicrobial susceptibility profiles of the causative agents. Methods We established a systematic, standardised surveillance of blood culture-based febrile illness in 13 African sentinel sites with previous reports of typhoid fever: Burkina Faso (two sites), Ethiopia, Ghana, Guinea-Bissau, Kenya, Madagascar (two sites), Senegal, South Africa, Sudan, and Tanzania (two sites). We used census data and health-care records to define study catchment areas and populations. Eligible participants were either inpatients or outpatients who resided within the catchment area and presented with tympanic (≥38·0°C) or axillary temperature (≥37·5°C). Inpatients with a reported history of fever for 72 h or longer were excluded. We also implemented a health-care utilisation survey in a sample of households randomly selected from each study area to investigate health-seeking behaviour in cases of self-reported fever lasting less than 3 days. Typhoid fever and iNTS disease incidences were corrected for health-care-seeking behaviour and recruitment. Findings Between March 1, 2010, and Jan 31, 2014, 135 Salmonella enterica serotype Typhi (S Typhi) and 94 iNTS isolates were cultured from the blood of 13 431 febrile patients. Salmonella spp accounted for 33% or more of all bacterial pathogens at nine sites. The adjusted incidence rate (AIR) of S Typhi per 100 000 person-years of observation ranged from 0 (95% CI 0–0) in Sudan to 383 (274–535) at one site in Burkina Faso; the AIR of iNTS ranged from 0 in Sudan, Ethiopia, Madagascar (Isotry site), and South Africa to 237 (178–316) at the second site in Burkina Faso. The AIR of iNTS and typhoid fever in individuals younger than 15 years old was typically higher than in those aged 15 years or older. Multidrug-resistant S Typhi was isolated in Ghana, Kenya, and Tanzania (both sites combined), and multidrug-resistant iNTS was isolated in Burkina Faso (both sites combined), Ghana, Kenya, and Guinea-Bissau. Interpretation Typhoid fever and iNTS disease are major causes of invasive bacterial febrile illness in the sampled locations, most commonly affecting children in both low and high population density settings. The development of iNTS vaccines and the introduction of S Typhi conjugate vaccines should be considered for high-incidence settings, such as those identified in this study. Funding Bill & Melinda Gates Foundation.


PLOS Neglected Tropical Diseases | 2014

Mass Vaccination with a New, Less Expensive Oral Cholera Vaccine Using Public Health Infrastructure in India: The Odisha Model

Shantanu Kumar Kar; Binod Sah; Bikash Patnaik; Yang Hee Kim; Anna S. Kerketta; Sunheang Shin; Shyam Bandhu Rath; Mohammad Ali; Vittal Mogasale; Hemant K. Khuntia; Anuj Bhattachan; Young Ae You; Mahesh K. Puri; Anna Lena Lopez; Brian Maskery; Gopinath Balakrish Nair; John D. Clemens; Thomas F. Wierzba

Introduction The substantial morbidity and mortality associated with recent cholera outbreaks in Haiti and Zimbabwe, as well as with cholera endemicity in countries throughout Asia and Africa, make a compelling case for supplementary cholera control measures in addition to existing interventions. Clinical trials conducted in Kolkata, India, have led to World Health Organization (WHO)-prequalification of Shanchol, an oral cholera vaccine (OCV) with a demonstrated 65% efficacy at 5 years post-vaccination. However, before this vaccine is widely used in endemic areas or in areas at risk of outbreaks, as recommended by the WHO, policymakers will require empirical evidence on its implementation and delivery costs in public health programs. The objective of the present report is to describe the organization, vaccine coverage, and delivery costs of mass vaccination with a new, less expensive OCV (Shanchol) using existing public health infrastructure in Odisha, India, as a model. Methods All healthy, non-pregnant residents aged 1 year and above residing in selected villages of the Satyabadi block (Puri district, Odisha, India) were invited to participate in a mass vaccination campaign using two doses of OCV. Prior to the campaign, a de jure census, micro-planning for vaccination and social mobilization activities were implemented. Vaccine coverage for each dose was ascertained as a percentage of the censused population. The direct vaccine delivery costs were estimated by reviewing project expenditure records and by interviewing key personnel. Results The mass vaccination was conducted during May and June, 2011, in two phases. In each phase, two vaccine doses were given 14 days apart. Sixty-two vaccination booths, staffed by 395 health workers/volunteers, were established in the community. For the censused population, 31,552 persons (61% of the target population) received the first dose and 23,751 (46%) of these completed their second dose, with a drop-out rate of 25% between the two doses. Higher coverage was observed among females and among 6–17 year-olds. Vaccine cost at market price (about US


BMC Public Health | 2012

Clinical, epidemiological, and spatial characteristics of Vibrio parahaemolyticus diarrhea and cholera in the urban slums of Kolkata, India

Suman Kanungo; Dipika Sur; Mohammad Ali; Young Ae You; Debottam Pal; Byomkesh Manna; Swapan Kumar Niyogi; Banwarilal Sarkar; Sujit K. Bhattacharya; John D. Clemens; G. Balakrish Nair

1.85/dose) was the costliest item. The vaccine delivery cost was


PLOS Pathogens | 2014

Molecular Insights Into the Evolutionary Pathway of Vibrio cholerae O1 Atypical El Tor Variants

Eun Jin Kim; Dokyung Lee; Se Hoon Moon; Chan Hee Lee; Sang Jun Kim; Jae Hyun Lee; Jae Ouk Kim; Manki Song; Bhabatosh Das; John D. Clemens; Jean W. Pape; G. Balakrish Nair; Dong Wook Kim

0.49 per dose or


PLOS ONE | 2013

Risk Map of Cholera Infection for Vaccine Deployment: The Eastern Kolkata Case

Young Ae You; Mohammad Ali; Suman Kanungo; Binod Sah; Byomkesh Manna; Mahesh K. Puri; G. Balakrish Nair; Sujit K. Bhattacharya; Matteo Convertino; Jacqueline L. Deen; Anna Lena Lopez; Thomas F. Wierzba; John D. Clemens; Dipika Sur

1.13 per fully vaccinated person. Discussion This is the first undertaken project to collect empirical evidence on the use of Shanchol within a mass vaccination campaign using existing public health program resources. Our findings suggest that mass vaccination is feasible but requires detailed micro-planning. The vaccine and delivery cost is affordable for resource poor countries. Given that the vaccine is now WHO pre-qualified, evidence from this study should encourage oral cholera vaccine use in countries where cholera remains a public health problem.


Vaccine | 2016

The oral cholera vaccine Shanchol™ when stored at elevated temperatures maintains the safety and immunogenicity profile in Bangladeshi participants.

Amit Saha; Arifuzzaman Khan; Umme Salma; Nusrat Jahan; Taufiqur Rahman Bhuiyan; Fahima Chowdhury; Ashraful I. Khan; Farhana Khanam; Sundaram Muruganandham; Sreeramulu Reddy Kandukuri; Mandeep Singh Dhingra; John D. Clemens; Alejandro Cravioto; Firdausi Qadri

BackgroundThere is not much information on the differences in clinical, epidemiological and spatial characteristics of diarrhea due to V. cholerae and V. parahaemolyticus from non-coastal areas. We investigated the differences in clinical, epidemiological and spatial characteristics of the two Vibrio species in the urban slums of Kolkata, India.MethodsThe data of a cluster randomized cholera vaccine trial were used. We restricted the analysis to clusters assigned to placebo. Survival analysis of the time to the first episode was used to analyze risk factors for V. parahaemolyticus diarrhea or cholera. A spatial scan test was used to identify high risk areas for cholera and for V. parahaemolyticus diarrhea.ResultsIn total, 54,519 people from the placebo clusters were assembled. The incidence of cholera (1.30/1000/year) was significantly higher than that of V. parahaemolyticus diarrhea (0.63/1000/year). Cholera incidence was inversely related to age, whereas the risk of V. parahaemolyticus diarrhea was age-independent. The seasonality of diarrhea due to the two Vibrio species was similar. Cholera was distinguished by a higher frequency of severe dehydration, and V. parahaemolyticus diarrhea was by abdominal pain. Hindus and those who live in household not using boiled or treated water were more likely to have V. parahaemolyticus diarrhea. Young age, low socioeconomic status, and living closer to a project healthcare facility were associated with an increased risk for cholera. The high risk area for cholera differed from the high risk area for V. parahaemolyticus diarrhea.ConclusionWe report coexistence of the two vibrios in the slums of Kolkata. The two etiologies of diarrhea had a similar seasonality but had distinguishing clinical features. The risk factors and the high risk areas for the two diseases differ from one another suggesting different modes of transmission of these two pathogens.

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Mohammad Ali

Johns Hopkins University

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Thomas F. Wierzba

International Vaccine Institute

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Young Ae You

International Vaccine Institute

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Dipika Sur

Indian Council of Medical Research

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Suman Kanungo

Indian Council of Medical Research

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Deok Ryun Kim

International Vaccine Institute

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Justin Im

International Vaccine Institute

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Byomkesh Manna

Indian Council of Medical Research

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Sujit K. Bhattacharya

Indian Council of Medical Research

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Anna Lena Lopez

University of the Philippines Manila

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