John F. Cahill
University of California, San Diego
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Featured researches published by John F. Cahill.
Chemical Science | 2012
Min Kim; John F. Cahill; Yongxuan Su; Kimberly A. Prather; Seth M. Cohen
Herein, we report that the exchange of ligands from an intact metal–organic framework (MOF) can be exploited as a means to introduce functionalized ligands into MOFs under mild conditions. It is shown that ligand exchange can occur with ‘inert’ Zr(IV)-based UiO-66 MOFs in a solvent dependent manner. We call this process postsynthetic exchange (PSE) and show that it provides access to MOFs that are not readily prepared in high quality by solvothermal methods. It was found that ligand exchange can occur between UiO-66 MOFs as monitored by aerosol time-of-flight mass spectrometry (ATOFMS). ATOFMS was used to analyze the chemical composition of microcrystalline MOFs on the single particle level, providing information not available through bulk analysis. PSE is an important postsynthetic approach to the modification of MOFs, and the ligand exchange revealed by ATOFMS requires a re-evaluation of the assumed ‘stability’ of even the most robust MOFs.
Environmental Science & Technology | 2014
Olivia S. Ryder; Andrew P. Ault; John F. Cahill; Timothy L. Guasco; T. P. Riedel; Luis A. Cuadra-Rodriguez; Cassandra J. Gaston; Elizabeth Fitzgerald; Christopher Lee; Kimberly A. Prather; Timothy H. Bertram
The rates of heterogeneous reactions of trace gases with aerosol particles are complex functions of particle chemical composition, morphology, and phase state. Currently, the majority of model parametrizations of heterogeneous reaction kinetics focus on the population average of aerosol particle mass, assuming that individual particles have the same chemical composition as the average state. Here we assess the impact of particle mixing state on heterogeneous reaction kinetics using the N2O5 reactive uptake coefficient, γ(N2O5), and dependence on the particulate chloride-to-nitrate ratio (nCl(-)/nNO3(-)). We describe the first simultaneous ambient observations of single particle chemical composition and in situ determinations of γ(N2O5). When accounting for particulate nCl(-)/nNO3(-) mixing state, model parametrizations of γ(N2O5) continue to overpredict γ(N2O5) by more than a factor of 2 in polluted coastal regions, suggesting that chemical composition and physical phase state of particulate organics likely control γ(N2O5) in these air masses. In contrast, direct measurement of γ(N2O5) in air masses of marine origin are well captured by model parametrizations and reveal limited suppression of γ(N2O5), indicating that the organic mass fraction of fresh sea spray aerosol at this location does not suppress γ(N2O5). We provide an observation-based framework for assessing the impact of particle mixing state on gas-particle interactions.
Analytical Chemistry | 2015
John F. Cahill; Vilmos Kertesz; Gary J. Van Berkel
A commercial optical microscope, laser microdissection instrument was coupled with an electrospray ionization mass spectrometer via a low profile liquid vortex capture probe to yield a hybrid optical microscopy/mass spectrometry imaging system. The instrument has bright-field and fluorescence microscopy capabilities in addition to a highly focused UV laser beam that is utilized for laser ablation of samples. With this system, material laser ablated from a sample using the microscope was caught by a liquid vortex capture probe and transported in solution for analysis by electrospray ionization mass spectrometry. Both lane scanning and spot sampling mass spectral imaging modes were used. The smallest area the system was able to ablate was ∼0.544 μm × ∼0.544 μm, achieved by oversampling of the smallest laser ablation spot size that could be obtained (∼1.9 μm). With use of a model photoresist surface, known features as small as ∼1.5 μm were resolved. The capabilities of the system with real world samples were demonstrated first with a blended polymer thin film containing poly(2-vinylpyridine) and poly(N-vinylcarbazole). Using spot sampling imaging, sub-micrometer sized features (0.62, 0.86, and 0.98 μm) visible by optical microscopy were clearly distinguished in the mass spectral images. A second real world example showed the imaging of trace amounts of cocaine in mouse brain thin tissue sections. With use of a lane scanning mode with ∼6 μm × ∼6 μm data pixels, features in the tissue as small as 15 μm in size could be distinguished in both the mass spectral and optical images.
Analytical Chemistry | 2015
John F. Cahill; Thomas K. Darlington; Christine Fitzgerald; Nathan G. Schoepp; Joris Beld; Michael D. Burkart; Kimberly A. Prather
Metabolomics studies typically perform measurements on populations of whole cells which provide the average representation of a collection of many cells. However, key mechanistic information can be lost using this approach. Investigating chemistry at the single cell level yields a more accurate representation of the diversity of populations within a cell sample; however, this approach has many analytical challenges. In this study, an aerosol time-of-flight mass spectrometer (ATOFMS) was used for rapid analysis of single algae and cyanobacteria cells with diameters ranging from 1 to 8 μm. Cells were aerosolized by nebulization and directly transmitted into the ATOFMS. Whole cells were determined to remain intact inside the instrument through a combination of particle sizing and imaging measurements. Differences in cell populations were observed after perturbing Chlamydomonas reinhardtii cells via nitrogen deprivation. Thousands of single cells were measured over a period of 4 days for nitrogen-replete and nitrogen-limited conditions. A comparison of the single cell mass spectra of the cells sampled under the two conditions revealed an increase in the dipalmitic acid sulfolipid sulfoquinovosyldiacylglycerol (SQDG), a chloroplast membrane lipid, under nitrogen-limited conditions. Single cell peak intensity distributions demonstrate the ability of the ATOFMS to measure metabolic differences of single cells. The ATOFMS provides an unprecedented maximum throughput of 50 Hz, enabling the rapid online measurement of thousands of single cell mass spectra.
Frontiers in Plant Science | 2018
John F. Cahill; Vilmos Kertesz
Current analytical methods are not capable of providing rapid, sensitive, and comprehensive chemical analysis of a wide range of cellular constitutes of single cells (e.g., lipids, metabolites, proteins, etc.) from dispersed cell suspensions and thin tissues. This capability is important for a number of critical applications, including discovery of cellular mechanisms for coping with chemical or environmental stress and cellular response to drug treatment, to name a few. Here we introduce an optically guided platform and methodology for rapid, automated recognition, sampling, and chemical analysis of surface confined individual cells utilizing a novel hybrid laser capture microdissection/liquid vortex capture/mass spectrometry system. The system enabled automated analysis of single cells by reliably detecting and sampling them either through laser ablation from a glass microscope slide or by cutting the entire cell out of a poly(ethylene naphthalate)-coated membrane substrate that the cellular sample is deposited on. Proof of principle experiments were performed using thin tissues of Allium cepa and cultured Euglena gracilis and Phacus cell suspensions as model systems for single cell analysis using the developed method. Reliable, hands-off laser ablation sampling coupled to liquid vortex capture/mass spectrometry analysis was conducted for hundreds of individual Allium cepa cells in connected tissue. In addition, more than 300 individual Euglena gracilis and Phacus cells were analyzed automatically and sampled using laser microdissection sampling with the same liquid vortex capture/mass spectrometry analysis system. Principal component analysis-linear discriminant analysis, applied to each mass spectral dataset, was used to determine the accuracy of differentiation of the different algae cell lines.
Journal of the American Chemical Society | 2012
Min Kim; John F. Cahill; Honghan Fei; Kimberley A. Prather; Seth M. Cohen
Inorganic Chemistry | 2013
Honghan Fei; John F. Cahill; Kimberly A. Prather; Seth M. Cohen
Atmospheric Chemistry and Physics | 2012
Rahul A. Zaveri; William J. Shaw; Daniel J. Cziczo; Beat Schmid; Richard A. Ferrare; M. L. Alexander; M. Alexandrov; Raul J. Alvarez; W. P. Arnott; Dean B. Atkinson; Sunil Baidar; R. M. Banta; James C. Barnard; Josef Beranek; Larry K. Berg; Fred J. Brechtel; W. A. Brewer; John F. Cahill; Brian Cairns; Christopher D. Cappa; Duli Chand; Swarup China; Jennifer M. Comstock; Manvendra K. Dubey; Richard C. Easter; M. Erickson; Jerome D. Fast; Cody Floerchinger; Bradley A. Flowers; Edward Charles Fortner
Journal of Geophysical Research | 2013
Scott Hersey; J. S. Craven; A. R. Metcalf; Jack J. Lin; T. L. Lathem; Kaitlyn J. Suski; John F. Cahill; H. T. Duong; Armin Sorooshian; Haflidi H. Jonsson; Manabu Shiraiwa; Andreas Zuend; Athanasios Nenes; Kimberly A. Prather; John H. Seinfeld
Atmospheric Chemistry and Physics | 2013
Alberto Cazorla; Ranjit Bahadur; Kaitlyn J. Suski; John F. Cahill; Duli Chand; Beat Schmid; V. Ramanathan; Kimberly A. Prather