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Dive into the research topics where John Hogden is active.

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Featured researches published by John Hogden.


Journal of the Acoustical Society of America | 1996

Accurate recovery of articulator positions from acoustics: New conclusions based on human data

John Hogden; Anders Löfqvist; Vince Gracco; Igor Zlokarnik; Philip E. Rubin; Elliot Saltzman

Vocal tract models are often used to study the problem of mapping from the acoustic transfer function to the vocal tract area function (inverse mapping). Unfortunately, results based on vocal tract models are strongly affected by the assumptions underlying the models. In this study, the mapping from acoustics (digitized speech samples) to articulation (measurements of the positions of receiver coils placed on the tongue, jaw, and lips) is examined using human data from a single speaker: Simultaneous acoustic and articulator measurements made for vowel-to-vowel transitions, /g/ closures, and transitions into and out of /g/ closures. Articulator positions were measured using an EMMA system to track coils placed on the lips, jaw, and tongue. Using these data, look-up tables were created that allow articulator positions to be estimated from acoustic signals. On a data set not used for making look-up tables, correlations between estimated and actual coil positions of around 94% and root-mean-squared errors around 2 mm are common for coils on the tongue. An error source evaluation shows that estimating articulator positions from quantized acoustics gives root-mean-squared errors that are typically less than 1 mm greater than the errors that would be obtained from quantizing the articulator positions themselves. This study agrees with and extends previous studies of human data by showing that for the data studied, speech acoustics can be used to accurately recover articulator positions.


Nature Communications | 2016

Accelerated search for materials with targeted properties by adaptive design

Dezhen Xue; Prasanna V. Balachandran; John Hogden; James Theiler; Deqing Xue; Turab Lookman

Finding new materials with targeted properties has traditionally been guided by intuition, and trial and error. With increasing chemical complexity, the combinatorial possibilities are too large for an Edisonian approach to be practical. Here we show how an adaptive design strategy, tightly coupled with experiments, can accelerate the discovery process by sequentially identifying the next experiments or calculations, to effectively navigate the complex search space. Our strategy uses inference and global optimization to balance the trade-off between exploitation and exploration of the search space. We demonstrate this by finding very low thermal hysteresis (ΔT) NiTi-based shape memory alloys, with Ti50.0Ni46.7Cu0.8Fe2.3Pd0.2 possessing the smallest ΔT (1.84 K). We synthesize and characterize 36 predicted compositions (9 feedback loops) from a potential space of ∼800,000 compositions. Of these, 14 had smaller ΔT than any of the 22 in the original data set.


Scientific Reports | 2016

Adaptive Strategies for Materials Design using Uncertainties

Prasanna V. Balachandran; Dezhen Xue; James Theiler; John Hogden; Turab Lookman

We compare several adaptive design strategies using a data set of 223 M2AX family of compounds for which the elastic properties [bulk (B), shear (G), and Young’s (E) modulus] have been computed using density functional theory. The design strategies are decomposed into an iterative loop with two main steps: machine learning is used to train a regressor that predicts elastic properties in terms of elementary orbital radii of the individual components of the materials; and a selector uses these predictions and their uncertainties to choose the next material to investigate. The ultimate goal is to obtain a material with desired elastic properties in as few iterations as possible. We examine how the choice of data set size, regressor and selector impact the design. We find that selectors that use information about the prediction uncertainty outperform those that don’t. Our work is a step in illustrating how adaptive design tools can guide the search for new materials with desired properties.


Speech Communication | 2007

Inverting mappings from smooth paths through Rn to paths through Rm: A technique applied to recovering articulation from acoustics

John Hogden; Philip E. Rubin; Erik McDermott; Shigeru Katagiri; Louis Goldstein

Motor theories, which postulate that speech perception is related to linguistically significant movements of the vocal tract, have guided speech perception research for nearly four decades but have had little impact on automatic speech recognition. In this paper, we describe a signal processing technique named MIMICRI that may help link motor theory with automatic speech recognition by providing a practical approach to recovering articulator positions from acoustics. MIMICRIs name reflects three important operations it can perform on time-series data: it can reduce the dimensionality of a data set (manifold inference); it can blindly invert nonlinear functions applied to the data (mapping inversion); and it can use temporal context to estimate intermediate data (contextual recovery of information). In order for MIMICRI to work, the signals to be analyzed must be functions of unobservable signals that lie on a linear subspace of the set of all unobservable signals. For example, MIMICRI will typically work if the unobservable signals are band-pass and we know the pass-band, as is the case for articulator motions. We discuss the abilities of MIMICRI as they relate to speech processing applications, particularly as they relate to inverting the mapping from speech articulator positions to acoustics. We then present a mathematical proof that explains why MIMICRI can invert nonlinear functions, which it can do even in some cases in which the mapping from the unobservable variables to the observable variables is many-to-one. Finally, we show that MIMICRI is able to infer accurately the positions of the speech articulators from speech acoustics for vowels. Five parameters estimated by MIMICRI were more linearly related to articulator positions than 128 spectral energies.


Journal of the Acoustical Society of America | 1996

A maximum likelihood approach to estimating speech articulator positions from speech acoustics

John Hogden

An algorithm called maximum likelihood continuity mapping (MALCOM) will be presented. MALCOM recovers the positions of the tongue, jaw, and lips from measurements of the sound‐pressure waveform of speech. Unlike other techniques for recovering articulator positions from speech, MALCOM does not require training on measured or modeled articulator positions, and MALCOM does not rely on any particular model of sound propagation through the vocal tract. The algorithm categorizes short‐time windows of speech into a finite number of sound types, and assumes the probability of using any articulator position to produce a given sound type can be described by a parametrized probability density function. MALCOM uses maximum likelihood estimation techniques to: (1) find the most likely smooth articulator path given a speech sample and a set of probability density functions (one density function for each sound type); and (2) change the parameters of the probability density functions to better account for the data. The ...


Journal of Computational and Graphical Statistics | 2012

Developing Systems for Real-Time Streaming Analysis

Sarah Michalak; Andrew J. DuBois; David H. DuBois; Scott Vander Wiel; John Hogden

Sources of streaming data are proliferating and so are the demands to analyze and mine such data in real time. Statistical methods frequently form the core of real-time analysis, and therefore, statisticians increasingly encounter the challenges and implicit requirements of real-time systems. This work recommends a comprehensive strategy for development and implementation of streaming algorithms, beginning with exploratory data analysis in a flexible computing environment, leading to specification of a computational algorithm for the streaming setting and its initial implementation, and culminating in successive improvements to computational efficiency and throughput. This sequential development relies on a collaboration between statisticians, domain scientists, and the computer engineers developing the real-time system. This article illustrates the process in the context of a radio astronomy challenge to mitigate adverse impacts of radio frequency interference (noise) in searches for high-energy impulses from distant sources. The radio astronomy application motivates discussion of system design, code optimization, and the use of hardware accelerators such as graphics processing units, field-programmable gate arrays, and IBM Cell processors. Supplementary materials, available online, detail the computing systems typically used for streaming systems with real-time constraints and the process of optimizing code for high efficiency and throughput.


Archive | 2016

A Perspective on Materials Informatics: State-of-the-Art and Challenges

Turab Lookman; Prasanna V. Balachandran; Dezhen Xue; G. Pilania; T. Shearman; James Theiler; J. E. Gubernatis; John Hogden; K. Barros; E. BenNaim; F. J. Alexander

We review how classification and regression methods have been used on materials problems and outline a design loop that serves as a basis for adaptively finding materials with targeted properties.


Journal of the Acoustical Society of America | 1993

Inferring articulator positions from acoustics: An electromagnetic midsagittal articulometer experiment

John Hogden; Anders Lofquist; Vincent L. Gracco; Kiyoshi Oshima; Philip E. Rubin; Elliot Saltzman

To examine the mapping from acoustics to articulation, simultaneous articulatory and acoustic measurements were made of 90 vowel‐to‐vowel transitions produced by a Swedish speaker. Articulator positions were measured using an electromagnetic midsagittal articulometer that tracked seven receiver coils placed on the lips, jaw, and tongue. The vocal tract transfer function associated with each articulator position was estimated using cepstral analysis on short windows (25.6 ms) of the acoustic signal. The transfer functions were then vector quantized, giving each articulator configuration a corresponding vector quantization code. Given an acoustic signal and its corresponding vector quantization code (code 1 for example), an estimate of the position of any coil during the production of a speech signal can be made by averaging all the positions the coil assumed during the production of sounds labeled with vector quantization code 1. This produces a codebook that allows articulator positions to be estimated fr...


Journal of the Acoustical Society of America | 1992

An unsupervised method for learning to track tongue position from an acoustic signal.

John Hogden; Philip E. Rubin; Elliot Saltzman

A procedure for learning to recover the relative positions of the articulators from speech signals is demonstrated. The algorithm learns without supervision, that is, it does not require information about which articulator configurations created the acoustic signals in the training set. The procedure consists of vector quantizing short time windows of a speech signal, then using multidimensional scaling to represent quantization codes that were temporally close in the encoded speech signal by nearby points in a continuity map. Since temporally close sounds must have been produced by similar articulator configurations, sounds which were produced by similar articulator positions should be represented close to each other in the continuity map. Using an articulatory speech synthesizer to produce acoustic signals from known articulator positions, relative articulator positions were estimated from synthesized acoustic signals and compared to the synthesizer’s actual articulator positions. High rank‐order correl...


Archive | 2018

Importance of Feature Selection in Machine Learning and Adaptive Design for Materials

Prasanna V. Balachandran; Dezhen Xue; James Theiler; John Hogden; J. E. Gubernatis; Turab Lookman

In materials informatics, features (or descriptors) that capture trends in the structure, chemistry and/or bonding for a given chemical composition are crucial. Here, we explore their role in the accelerated search for new materials using machine learning adaptive design. We focus on a specific class of materials referred to as apatites [A\(_{10}\)(BO\(_4\))\(_6\)X\(_2\)] and our objective is to identify an apatite compound with the largest band gap (E\(_g\)) without performing density functional theory calculations over the entire composition space. We construct three datasets that use three sets of features of the A, B, and X-ions (ionic radii, electronegativities, and the combination of both) and independently track which of these sets finds most rapidly the composition with the largest E\(_g\). We find that the combined feature set performs best, followed by the ionic radii feature set. The reason for this ranking is the B-site ionic radius, which is the key E\(_g\)-governing feature and appears in both the ionic radii and combined feature sets. Our results show that a relatively poor ML model with large error but one that contains key features can be more efficient in accelerating the search than a low-error model that lack such features.

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James Theiler

Los Alamos National Laboratory

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Turab Lookman

Los Alamos National Laboratory

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Dezhen Xue

Xi'an Jiaotong University

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David Nix

Los Alamos National Laboratory

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Igor Zlokarnik

Los Alamos National Laboratory

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J. E. Gubernatis

Los Alamos National Laboratory

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Sarah Michalak

Los Alamos National Laboratory

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