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Dive into the research topics where John R. Stephenson is active.

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Featured researches published by John R. Stephenson.


Transactions of The American Fisheries Society | 2009

Assessment of Barotrauma from Rapid Decompression of Depth-Acclimated Juvenile Chinook Salmon Bearing Radiotelemetry Transmitters

Richard S. Brown; Thomas J. Carlson; Abigail E. Welch; John R. Stephenson; C. Scott Abernethy; Blaine D. Ebberts; Mike J. Langeslay; Martin L. Ahmann; Dan H. Feil; John R. Skalski; Richard L. Townsend

Abstract This study investigated the mortality of and injury to juvenile Chinook salmon Oncorhynchus tshawytscha exposed to simulated pressure changes associated with passage through a large Kaplan hydropower turbine. Mortality and injury varied depending on whether a fish was carrying a transmitter, the method of transmitter implantation, the depth of acclimation, and the size of the fish. Juvenile Chinook salmon implanted with radio transmitters were more likely than those without to die or sustain injuries during simulated turbine passage. Gastric transmitter implantation resulted in higher rates of injury and mortality than surgical implantation. Mortality and injury increased with increasing pressure of acclimation. Injuries were more common in subyearling fish than in yearling fish. Gas emboli in the gills and internal hemorrhaging were the major causes of mortality. Rupture of the swim bladder and emphysema in the fins were also common. This research makes clear that the exposure of juvenile Chinoo...


Transactions of The American Fisheries Society | 2012

Quantifying Mortal Injury of Juvenile Chinook Salmon Exposed to Simulated Hydro-Turbine Passage

Richard S. Brown; Thomas J. Carlson; Andrew J. Gingerich; John R. Stephenson; Brett D. Pflugrath; Abigail E. Welch; Mike J. Langeslay; Martin L. Ahmann; Robert L. Johnson; John R. Skalski; Adam G. Seaburg; Richard L. Townsend

Abstract A proportion of juvenile Chinook salmon Oncorhynchus tshawytscha and other salmonids travel through one or more turbines during their seaward migration in the Columbia and Snake rivers. There is limited information on how these fish respond to the hydraulic pressures found during turbine passage events. We exposed juvenile Chinook salmon to varied acclimation pressures and subsequent exposure pressures to mimic the hydraulic pressures of large Kaplan turbines. Additionally, we varied abiotic (total dissolved gas and rate of pressure change) and biotic factors (condition factor, fish length, and fish weight) that may contribute to the incidence of mortal injury associated with fish passage through hydropower turbines. We determined that the main factor associated with the mortal injury of juvenile Chinook salmon during simulated turbine passage was the ratio between the acclimation pressure and the lowest exposure pressure. Condition factor, total dissolved gas, and rate of pressure change were fo...


North American Journal of Fisheries Management | 2012

The Influence of Tag Presence on the Mortality of Juvenile Chinook Salmon Exposed to Simulated Hydroturbine Passage: Implications for Survival Estimates and Management of Hydroelectric Facilities

Thomas J. Carlson; Richard S. Brown; John R. Stephenson; Brett D. Pflugrath; Alison H. Colotelo; Andrew J. Gingerich; Piper L. Benjamin; Mike J. Langeslay; Martin L. Ahmann; Robert L. Johnson; John R. Skalski; Adam G. Seaburg; Richard L. Townsend

Abstract Each year, telemetry tags (acoustic, radio, and passive integrated transponder tags) are surgically implanted into thousands of fish to assess their passage and survival through hydropower facilities. One passage route that is of particular concern is through hydroturbines, where fish may be exposed to a range of potential injuries that include barotraumas from rapid decompression. The change in pressure from acclimation to exposure (nadir) has been identified as an important factor in predicting the likelihood of mortality and injury for juvenile Chinook salmon Oncorhynchus tshawytscha undergoing rapid decompression associated with simulated turbine passage. The presence of telemetry tags has also been shown to influence the likelihood of mortality and injury for juvenile Chinook salmon. We investigated the likelihood of mortality and injury for telemetry-tagged juvenile Chinook salmon that were exposed to a range of pressure changes associated with simulated turbine passage. Several factors wer...


Transactions of The American Fisheries Society | 2012

The Effects of Neutrally Buoyant, Externally Attached Transmitters on Swimming Performance and Predator Avoidance of Juvenile Chinook Salmon

Jill M. Janak; Richard S. Brown; Alison H. Colotelo; Brett D. Pflugrath; John R. Stephenson; Z. Daniel Deng; Thomas J. Carlson; Adam G. Seaburg

Abstract Migrating juvenile salmonids experience rapid decompression that could result in injury or mortality due to barotrauma as they pass turbines at hydropower facilities. Recent research indicates that the risk of injury or mortality due to barotrauma is higher in fish bearing surgically implanted transmitters. Since tagged fish are used to represent the entire population, this tag effect potentially leads to inaccuracies in survival estimates for fish passing turbines. This problem led to development of a novel transmitter, the use of which may eliminate bias associated with the passage of transmitter-bearing fish through turbines. Juvenile Chinook salmon Oncorhynchus tshawytscha were tagged with two different neutrally buoyant, externally attached transmitters (types A and B). The effects of transmitter presence on swimming performance were examined by comparing critical swimming speeds (Ucrit ; an index of prolonged swimming performance) of externally tagged fish, untagged individuals, and fish th...


Transactions of The American Fisheries Society | 2008

Healing Rate of Swim Bladders in Rainbow Trout

Brian J. Bellgraph; Richard S. Brown; John R. Stephenson; Abigail E. Welch; Katherine A. Deters; Thomas J. Carlson

Abstract Swim bladders of juvenile rainbow trout Oncorhynchus mykiss were ruptured and subsequently observed for 28 d to identify healing patterns of swim bladder wounds and the effect of swim bladder rupture on direct mortality. Healing began within 7 d, wounds were completely closed after 14 d, and no mortality occurred. The healing process followed a pattern in which tissue first thickened around the opening (7-14 d), scarring of the ruptured area occurred, and evidence of the wound ultimately disappeared (21-28 d). The healing observed in juvenile rainbow trout suggests that swim bladder rupture does not result in direct mortality as was hypothesized; however, the indirect effects of swim bladder injury (e.g., a decreased ability to swim efficiently) may lead to mortality by predation or other natural phenomena that were not observable in this study.


Animal Biotelemetry | 2015

Performance of an acoustic telemetry system in a large fishway

Ki Won Jung; Z. Daniel Deng; Jayson J. Martinez; David R. Geist; Geoffrey A. McMichael; John R. Stephenson; Peter J. Graf

BackgroundThe ability to track fish in the vicinity of dams and detect the presence of fish in fishways (also referred to as fish ladders) is critical to understanding the migration biology of upstream migrating fish and their passage success. Acoustic telemetry provides a valuable method within the telemetry toolbox, but has rarely been used in noisy, constrained, swift-flowing, and air-entrained environments such as fishways because of the perceived limitations of acoustic telemetry in such environments relative to other techniques such as radio telemetry. However, there have been no published studies that represent systematic evaluations of both detection efficiency based on number of transmitted signals and detection probabilities based on number of fish detected in fishways for acoustic telemetry. As such, the efficacy of acoustic telemetry in a fishway was evaluated using both controlled field experiments and movements of live fish at the Wanapum Dam fishway on the Columbia River in Washington State. In this study, the Juvenile Salmon Acoustic Telemetry System (JSATS) was selected because of its high carrier frequency (416.7 kHz) and short signal duration yielding good system resilience in shallow, noisy, and constrained environments.ResultsDetection efficiencies from the controlled field experiments were over 80 % (mean ± standard error (SE) = 85 ± 2 %) for most locations within the fishway at Wanapum Dam. Detection efficiency was nearly 100 % (mean ± SE = 97 ± 1 %) in the fishway entrance when the transmitters (also referred to as tags) were within 10 m of the hydrophones. The detection probabilities for the live fish experiment were 100 % at all deployment locations.ConclusionsThis study suggests that a 416.7-kHz acoustic telemetry system with binary phase shift-keyed encoding is capable of reliably detecting fish within a large fishway, thus providing a reliable tool to enable researchers to understand and study fish behavior and their fate near and in fishways.


Archive | 2015

A Preliminary Assessment of Barotrauma Injuries and Acclimation Studies for Three Fish Species

Richard S. Brown; Ricardo W. Walker; John R. Stephenson

Fish that pass hydro structures either through turbine passage, deep spill, or other deep pathways can experience rapid decreases in pressure that can result in barotrauma. In addition to morphology and physiology of the fish’s swim bladder, the severity of barotrauma is directly related to the volume of undissolved gas in fish prior to rapid decompression and the lowest pressure the fish experience as they pass hydro structures (termed the “nadir”). The volume of undissolved gas in fish is influenced by the depth of acclimation (the pressure at which the fish is neutrally buoyant); therefore, determining the depth where fish are neutrally buoyant is a critical precursor to determining the relationship between pressure changes and injury or mortality.


Fisheries Research | 2010

Assessing barotrauma in neutrally and negatively buoyant juvenile salmonids exposed to simulated hydro-turbine passage using a mobile aquatic barotrauma laboratory

John R. Stephenson; Andrew J. Gingerich; Richard S. Brown; Brett D. Pflugrath; Zhiqun Deng; Thomas J. Carlson; Mike J. Langeslay; Martin L. Ahmann; Robert L. Johnson; Adam G. Seaburg


North American Journal of Fisheries Management | 2018

Juvenile Chinook Salmon Survival When Exposed to Simulated Dam Passage after Being Implanted with a New Microacoustic Transmitter

David R. Geist; Stephanie A. Liss; Ryan A. Harnish; Katherine A. Deters; Richard S. Brown; Zhiqun Daniel Deng; Jayson J. Martinez; Robert P. Mueller; John R. Stephenson


Archive | 2016

The Evaluation of the Response of American Eels to Rapid Decompression

Christina MacMillan; Alison H. Colotelo; John R. Stephenson; Briana Rhode; Trevor Macduff

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Thomas J. Carlson

Pacific Northwest National Laboratory

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Brett D. Pflugrath

Pacific Northwest National Laboratory

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Alison H. Colotelo

Pacific Northwest National Laboratory

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Martin L. Ahmann

United States Army Corps of Engineers

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Mike J. Langeslay

United States Army Corps of Engineers

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Abigail E. Welch

Pacific Northwest National Laboratory

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Andrew J. Gingerich

Pacific Northwest National Laboratory

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