John T. M. DiMaio

Seminal Plasma Accelerates Semen-derived Enhancer of Viral Infection (SEVI) Fibril Formation by the Prostatic Acid Phosphatase (PAP248–286) Peptide

Background: SEVI is an amyloid fibril that enhances HIV infectivity. To date, it has been produced from its precursor peptide only under nonphysiologic conditions. Results: Seminal plasma (SP) accelerates SEVI formation and protects SEVI from proteolytic degradation. Conclusion: SEVI forms spontaneously from its precursor peptide under physiologic conditions in SP. Significance: These findings may explain the presence of SEVI in human semen. Amyloid fibrils contained in semen, known as SEVI, or semen-derived enhancer of viral infection, have been shown to increase the infectivity of HIV dramatically. However, previous work with these fibrils has suggested that extensive time and nonphysiologic levels of agitation are necessary to induce amyloid formation from the precursor peptide (a proteolytic cleavage product of prostatic acid phosphatase, PAP248–286). Here, we show that fibril formation by PAP248–286 is accelerated dramatically in the presence of seminal plasma (SP) and that agitation is not required for fibrillization in this setting. Analysis of the effects of specific SP components on fibril formation by PAP248–286 revealed that this effect is primarily due to the anionic buffer components of SP (notably inorganic phosphate and sodium bicarbonate). Divalent cations present in SP had little effect on the kinetics of fibril formation, but physiologic levels of Zn2+ strongly protected SEVI fibrils from degradation by seminal proteases. Taken together, these data suggest that in the in vivo environment, PAP248–286 is likely to form fibrils efficiently, thus providing an explanation for the presence of SEVI in human semen.

Potent and selective bicyclic lactam inhibitors of thrombin: Part 2: P1 modifications.

The synthesis and antithrombotic activity of a series of nonpeptide bicyclic thrombin inhibitors is described. We have explored the SAR with modifications to the P1 site. The introduction of arginine mimetics at the P1 site led to potent and selective thrombin inhibitors.

Potent bicyclic lactam inhibitors of thrombin: Part I: P3 modifications.

Peptidomimetic inhibitors of general structure 1 have been prepared. Optimization of the binding affinities of these compounds through variation of the P3 hydrophobic residue is described. Selected substituted bicylic lactams displayed interesting pharmacological profiles both in vitro and in vivo.

Mechanisms of tau and Aβ-induced excitotoxicity.

Excitotoxicity was originally postulated to be a late stage side effect of Alzheimer׳s disease (AD)-related neurodegeneration, however more recent studies indicate that it may occur early in AD and contribute to the neurodegenerative process. Tau and amyloid beta (Aβ), the main components of neurofibrillary tangles (NFTs) and amyloid plaques, have been implicated in cooperatively and independently facilitating excitotoxicity. Our study investigated the roles of tau and Aβ in AD-related excitotoxicity. In vivo studies showed that tau knockout (tau(-/-)) mice were significantly protected from seizures and hippocampal superoxide production induced with the glutamate analog, kainic acid (KA). We hypothesized that tau accomplished this by facilitating KA-induced Ca(2+) influx into neurons, however lentiviral tau knockdown failed to ameliorate KA-induced Ca(2+) influx into primary rat cortical neurons. We further investigated if tau cooperated with Aβ to facilitate KA-induced Ca(2+) influx. While Aβ biphasically modulated the KA-induced Cacyt(2+) responses, tau knockdown continued to have no effect. Therefore, tau facilitates KA-induced seizures and superoxide production in a manner that does not involve facilitation of Ca(2+) influx through KA receptors (KAR). On the other hand, acute pretreatment with Aβ (10 min) enhanced KA-induced Ca(2+) influx, while chronic Aβ (24 h) significantly reduced it, regardless of tau knockdown. Given previously published connections between Aβ, group 1 metabotropic glutamate receptors (mGluRs), and KAR regulation, we hypothesized that Aβ modulates KAR via a G-protein coupled receptor pathway mediated by group 1 mGluRs. We found that Aβ did not activate group 1 mGluRs and inhibition of these receptors did not reverse Aβ modulation of KA-induced Ca(2+) influx. Therefore, Aβ biphasically regulates KAR via a mechanism that does not involve group 1mGluR activation.

Synthesis and structure-activity relationship of potent bicyclic lactam thrombin inhibitors

A simple and versatile method for preparation of (D)-Phe-Pro peptidomimetic bicyclic thiazolidine lactams is presented. These bicyclic lactams have chemical diversity alpha to the lactam carbonyl and, when linked to electrophilic arginines, provide potent thrombin inhibitors.

Fluorescence detection of cationic amyloid fibrils in human semen.

Cationic amyloid fibrils, including the Semen Enhancer of Virus Infection (SEVI), have recently been described in human semen. Simple methods for quantitating these fibrils are needed to improve our understanding of their biological function. We performed high-throughput screening to identify molecules that bind SEVI, and identified a small molecule (8E2), that fluoresced brightly in the presence of SEVI and other cationic fibrils. 8E2 bound SEVI with almost 40-fold greater affinity than thioflavin-T, and could efficiently detect high molecular weight fibrils in human seminal fluid.

Modulating Supramolecular Peptide Hydrogel Viscoelasticity Using Biomolecular Recognition

Self-assembled peptide-based hydrogels are emerging materials that have been exploited for wound healing, drug delivery, tissue engineering, and other applications. In comparison to synthetic polymer hydrogels, supramolecular peptide-based gels have advantages in biocompatibility, biodegradability, and ease of synthesis and modification. Modification of the emergent viscoelasticity of peptide hydrogels in a stimulus responsive fashion is a longstanding goal in the development of next-generation materials. In an effort to selectively modulate hydrogel viscoelasticity, we report herein a method to enhance the elasticity of β-sheet peptide hydrogels using specific molecular recognition events between functionalized hydrogel fibrils and biomolecules. Two distinct biomolecular recognition strategies are demonstrated: oligonucleotide Watson-Crick duplex formation between peptide nucleic acid (PNA) modified fibrils with a bridging oligonucleotide and protein-ligand recognition between mannose modified fibrils with concanavalin A. These methods to modulate hydrogel elasticity should be broadly adaptable in the context of these materials to a wide variety of molecular recognition partners.

Insertion of the Asp-Ser/Phe Sequence in the P′ Position of Hirutonin Provides Molecules Having Both Antithrombin and Disintegrin Activity

We have developed novel synthetic peptides that display both antithrombin and disintegrin activity. These peptides were derived from hirutonins, a class of potent proteolytically resistant thrombin inhibitors, in which a dipeptidyl sequence, Asp-Phe or Asp-Ser, was introduced after the proteolytically resistant ketomethylene arginyl glycine isostere. These modified hirutonins inhibited the amidolytic activity of alpha-thrombin (Ki approximately 35 nM), prevented fibrinogen clotting (dTT approximately 100 nM) and inhibited human platelet aggregation and 5-hydroxytryptamine secretion induced by alpha-thrombin (IC50 approximately 600 nM). Unlike their parent hirutonins, they inhibited SFLLR-NH2-induced human platelet aggregation (IC50 approximately 45 microM) without inhibition of 5-HT secretion. These peptides also competed for fibrinogen binding to purified GpIIbIIIa integrin (IC50 approximately microM) and prevented attachment of B16-F10 mouse melanoma cells to vitronectin. We conclude that addition of the dipeptidyl sequence, Asp-Phe or Asp-Ser, in hirutonin molecules confers disintegrin activity. However, this activity was not superior to the activity observed with the linear RGDS peptide and was achieved at the expense of direct antithrombin activity. Additional modifications around the RGD-like adhesion sequence may permit identification of the appropriate conformation for optimal binding to thrombin and to specific integrin receptors.

147Characterizing the conformational space of two disordered peptides in different solutions

Amyloid fibrils formed by peptides found in semen have been shown to enhance HIV infectivity in vitro. The first of these peptides to be identified was the 248–286 fragment of prostatic acid phosphatase (PAP248–286) (Munich et al., 2007). PAP248–286 is highly cationic, and its fibrils might facilitate infection by decreasing the electrostatic repulsion between the negatively charged surfaces of the virus and the target cell. Whereas PAP248–286 can easily form fibrils in seminal fluid, it needs rapid agitation in other environments, and certain ions have been shown to be critical for its assembly into fibrils (Olsen et al., 2012). However, mutation of the positively charged residues to alanine results in a peptide (PAP248–286Ala) that can more easily form fibrilar aggregates. We studied PAP248–286 and PAP248–286Ala fibril formation in water and water + NaCl environments. While PAP248-286Ala can efficiently form fibrils in both water and water + NaCl, PAP248-286 can only do so in a water + NaCl solution. The inability of PAP248–286 to form fibrils in water could be due solely to repulsion between the positively charged peptides, an effect that might be diminished by the presence of salt. However, it is also possible that the explanation lies in PAP248–286’s failure to populate conformations that can easily lead to ordered aggregates. To answer this question, using molecular dynamics simulations, we characterized the ensemble of conformations populated by the two peptides in water and water + NaCl environments. The results indicate that PAP248-286Ala favors contacts that stabilize a strand-turn-strand, or β-arch, motif around P31, the only proline residue in the sequence. Because β-arches are a common feature in amyloid fibrils, and because it is very unlikely that a proline residue would be in any position other than the β-arch, we expect the formation of this motif to be the rate-limiting step in PAP248–286Ala / PAP248–286 fibril formation. Moreover, the contacts stabilizing the β-arch would bring positively charged residues into contact in PAP248–286, which, consistent with the experimental results, would be facilitated by the presence of negative ions. To summarize, we have tried to understand if the inability of PAP248–286 to efficiently form fibrils in water is only due to a slower aggregation caused by electrostatic repulsion between the positively charged peptides. Our data suggest that this effect is also due to electrostatic repulsion between the residues within each monomeric peptide, which prevents PAP248–286 from populating conformations that would lead to ordered aggregates.