John W. Pepper

Cancer as an evolutionary and ecological process.

Neoplasms are microcosms of evolution. Within a neoplasm, a mosaic of mutant cells compete for space and resources, evade predation by the immune system and can even cooperate to disperse and colonize new organs. The evolution of neoplastic cells explains both why we get cancer and why it has been so difficult to cure. The tools of evolutionary biology and ecology are providing new insights into neoplastic progression and the clinical control of cancer.

SEX DIFFERENCES IN PATTERNS OF ASSOCIATION AMONG INDIAN OCEAN BOTTLENOSE DOLPHINS

Patterns of association among bottlenose dolphins resident in Shark Bay, Western Australia were analyzed using party membership data. Parties contained an average of 4.8 individuals, but party size and composition were unstable. While these temporary parties often contained both males and females, long term consistent associations generally were between members of the same sex. The highest association coefficients, resulting from very frequent co-occurrence within parties were between males and between mothers and offspring. Males formed subgroups of two or three individuals who consistently associated with each other, and these were stable over periods of at least seven years in some cases. Male subgroups preferentially associated with particular other male subgroups. Females associated most consistently with other females, although not to the same extent as some males. Female associations were better described as a network rather than discrete subgroups. Male-female associations were generally inconsistent and depended in part on female reproductive state. Mothers and their offspring associated very consistently for at least 4 years.

Influence of competitors on caching behaviour in the common raven,Corvus corax ☆

Both territorial breeding common ravens and nonbreeding vagrants scatter-hoard carcass meat extensively. We show experimentally with four captive nonbreeders in a large semi-natural enclosure that common ravens alter their caching behaviour in the presence of conspecifics. When four birds were simultaneously given a small amount of food, which any one bird by itself could easily remove in several trips, all four birds decreased the latency to begin caching and increased caching speed. In contrast, when the four birds were given only enough food for a single individual to control, caching was greatly delayed. If, as these results suggest, competition between conspecifics over food sources induces caching behaviour, then individuals should cache close to the food source to reduce travelling time and increase the time available to effectively compete for food in the presence of conspecifics. Here we show, that in the presence of competitors, common ravens instead cached further from the food source, provided they had space into which they could escape from the sight of the competitors. When escape from competitor vigilance was not possible, common ravens delayed caching and/or hid food when the competitor was preoccupied. A second factor that influenced caching behaviour was cache robbing; ravens not only recovered their own caches, but also routinely recovered the caches they saw others make. Copyright 1998 The Association for the Study of Animal Behaviour.

General Gregariousness and Specific Social Preferences among Wild Chimpanzees

Wild chimpanzees form temporary parties that vary in size and composition. Previous studies have revealed considerable intraspecific variation in party compositions. We examined patterns of association among age, sex, and reproductive classes of chimpanzees at Ngogo in the Kibale National Park, Uganda. We employed a class-based association index and a randomization procedure to control for confounding factors and to test for differences between classes. Results indicate that males associated with other males significantly more than expected if all classes behaved equivalently, while females generally associated with individuals of the same sex less than expected. To interpret these patterns we used two additional indices that separate associations into two components: general gregariousness and preference for particular classes of associates. Males and estrous females were more gregarious than other classes, while anestrous females were less so. After controlling for general gregariousness, adult males as a class showed no specific preference for associating with each other. Anestrous females preferred each other as party members, and estrous females avoided each other. These results are consistent with previous findings that adult males are more gregarious than females. They diverge from the standard picture of chimpanzee society, however, by suggesting a mutual affinity among anestrous females, but not among adult males as a class.

A Mechanism for the Evolution of Altruism among Nonkin: Positive Assortment through Environmental Feedback

The evolution of altruism often requires genetic similarity among interactors. For structured populations in which a social trait affects all group members, this entails positive assortment, meaning that cooperators and noncooperators tend to be segregated into different groups. Several authors have claimed that mechanisms other than common descent can produce positive assortment, but this claim has not been generally accepted. Here, we describe one such mechanism. The process of “environmental feedback” requires only that the cooperative trait affects the quality of the local environment and that individuals are more likely to leave low‐quality than high‐quality environments. We illustrate this dynamic using an agent‐based spatial model of feeding restraint. Depending on parameter settings, results included both positive assortment (required for the evolution of altruism) and negative assortment (required for the evolution of spite). The mechanism of environmental feedback appears to be a general one that could play a role in the evolution of many forms of cooperation.

Demographic and social constraints on male chimpanzee behaviour

Male chimpanzees, Pan troglodytes, are well known for affiliating and cooperating in a variety of behavioural contexts. Prior field research indicates that maternal kinship does not affect patterns of affiliation and cooperation by males in the same social group. Two questions remain unclear from this finding. First, why do male chimpanzees not bias their behaviour towards maternal kin? Second, what factors account for who affiliates and cooperates with whom? We conducted behavioural observations of an unusually large community of chimpanzees at Ngogo, Kibale National Park, Uganda, to test the hypothesis that demographic constraints limit the number of maternal kin with whom male chimpanzees can cooperate, and thereby lead them to form selective bonds with nonkin of similar age and status. Results indicated that male age and rank are significantly associated with four measures of social behaviour. Members of the same age class and individuals close in rank were more likely to affiliate and cooperate than males that belonged to different age and rank classes. Additional analyses replicate earlier findings and show that males who affiliated and cooperated were not closely related through the maternal line, as assayed by mtDNA haplotype sharing. These results add to our growing understanding of the important role demographic and social constraints play in animal behaviour.

Does biology need an organism concept

Among biologists, there is no general agreement on exactly what entities qualify as ‘organisms’. Instead, there are multiple competing organism concepts and definitions. While some authors think this is a problem that should be corrected, others have suggested that biology does not actually need an organism concept. We argue that the organism concept is central to biology and should not be abandoned. Both organism concepts and operational definitions are useful. We review criteria used for recognizing organisms and conclude that they are not categorical but rather continuously variable. Different organism concepts are useful for addressing different questions, and it is important to be explicit about which is being used. Finally, we examine the origins of the derived state of organismality, and suggest that it may result from positive feedback between natural selection and functional integration in biological entities.

Cancer research meets evolutionary biology

There is increasing evidence that Darwin’s theory of evolution by natural selection provides insights into the etiology and treatment of cancer. On a microscopic scale, neoplastic cells meet the conditions for evolution by Darwinian selection: cell reproduction with heritable variability that affects cell survival and replication. This suggests that, like other areas of biological and biomedical research, Darwinian theory can provide a general framework for understanding many aspects of cancer, including problems of great clinical importance. With the availability of raw molecular data increasing rapidly, this theory may provide guidance in translating data into understanding and progress. Several conceptual and analytical tools from evolutionary biology can be applied to cancer biology. Two clinical problems may benefit most from the application of Darwinian theory: neoplastic progression and acquired therapeutic resistance. The Darwinian theory of cancer has especially profound implications for drug development, both in terms of explaining past difficulties, and pointing the way toward new approaches. Because cancer involves complex evolutionary processes, research should incorporate both tractable (simplified) experimental systems, and also longitudinal observational studies of the evolutionary dynamics of cancer in laboratory animals and in human patients. Cancer biology will require new tools to control the evolution of neoplastic cells.

Animal cell differentiation patterns suppress somatic evolution.

Cell differentiation in multicellular organisms has the obvious function during development of creating new cell types. However, in long-lived organisms with extensive cell turnover, cell differentiation often continues after new cell types are no longer needed or produced. Here, we address the question of why this is true. It is believed that multicellular organisms could not have arisen or been evolutionarily stable without possessing mechanisms to suppress somatic selection among cells within organisms, which would otherwise disrupt organismal integrity. Here, we propose that one such mechanism is a specific pattern of ongoing cell differentiation commonly found in metazoans with cell turnover, which we call “serial differentiation.” This pattern involves a sequence of differentiation stages, starting with self-renewing somatic stem cells and proceeding through several (non–self-renewing) transient amplifying cell stages before ending with terminally differentiated cells. To test the hypothesis that serial differentiation can suppress somatic evolution, we used an agent-based computer simulation of cell population dynamics and evolution within tissues. The results indicate that, relative to other, simpler patterns, tissues organized into serial differentiation experience lower rates of detrimental cell-level evolution. Self-renewing cell populations are susceptible to somatic evolution, while those that are not self-renewing are not. We find that a mutation disrupting differentiation can create a new self-renewing cell population that is vulnerable to somatic evolution. These results are relevant not only to understanding the evolutionary origins of multicellularity, but also the causes of pathologies such as cancer and senescence in extant metazoans, including humans.

The evolution of evolvability in genetic linkage patterns.

A number of factors have been proposed that may affect the capacity for an evolutionary system to generate adaptation. One that has received little recent attention among biologists is linkage patterns, or the ordering of genes on chromosomes. In this study, a simple model of genetic interactions, implemented in an evolutionary simulation, demonstrates that clustering of epistatically interacting genes increases the rate of adaptation. Moreover, long-term evolution with inversion can reorganize linkage patterns from random gene ordering into this more modular organization, thereby facilitating adaptation. These results are consistent with a large body of biological observations and some mathematical theory. Although linkage patterns are neutral with respect to individual fitness in this model, they are subject to lineage level selection for evolvability. At least two candidate mechanisms may contribute to improved evolvability under epistatic clustering: clustering may reduce interference between selection on different traits, and it may allow the simultaneous optimization of different recombination rates for gene pairs with additive and epistatic fitness effects.