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Dive into the research topics where Jonathan C. Marshall is active.

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Featured researches published by Jonathan C. Marshall.


Frontiers in Ecology and the Environment | 2012

When the river runs dry: human and ecological values of dry riverbeds

Alisha L. Steward; Daniel von Schiller; Klement Tockner; Jonathan C. Marshall; Stuart E. Bunn

Temporary rivers and streams that naturally cease to flow and dry up can be found on every continent. Many other water courses that were once perennial now also have temporary flow regimes due to the effects of water extraction for human use or as a result of changes in land use and climate. The dry beds of these temporary rivers are an integral part of river landscapes. We discuss their importance in human culture and their unique diversity of aquatic, amphibious, and terrestrial biota. We also describe their role as seed and egg banks for aquatic biota, as dispersal corridors and temporal ecotones linking wet and dry phases, and as sites for the storage and processing of organic matter and nutrients. In light of these valuable functions, dry riverbeds need to be fully integrated into river management policies and monitoring programs. We also identify key knowledge gaps and suggest research questions concerning the values of dry riverbeds.


Science | 2014

Why Should We Care About Temporary Waterways

Vicenç Acuña; Thibault Datry; Jonathan C. Marshall; Damià Barceló; Clifford N. Dahm; Antoni Ginebreda; G. McGregor; Sergi Sabater; Klement Tockner; Margaret A. Palmer

Intermittently flowing streams and rivers should be recognized, afforded protection, and better managed. A proposed ruling by the U.S. Environmental Protection Agency (EPA), aimed at clarifying which bodies of water that flow intermittently are protected under law (1), has provoked conflict between developers and environmental advocates. Some argue that temporary streams and rivers, defined as waterways that cease to flow at some points in space and time along their course (see the figure, left) ( Fig. 1) (2), are essential to the integrity of entire river networks. Others argue that full protection will be too costly. Similar concerns extend far beyond the United States. Debate over how to treat temporary waterways in water-policy frameworks is ongoing (3), particularly because some large permanent rivers are shifting to temporary because of climate change and extraction of water (4). Even without human-induced changes, flow intermittency is part of the natural hydrology for streams and rivers globally.


Hydrobiologia | 2006

Taxonomic resolution and quantification of freshwater macroinvertebrate samples from an Australian dryland river : the benefits and costs of using species abundance data

Jonathan C. Marshall; Alisha L. Steward; Bronwyn Harch

In studies using macroinvertebrates as indicators for monitoring rivers and streams, species level identifications in comparison with lower resolution identifications can have greater information content and result in more reliable site classifications and better capacity to discriminate between sites, yet many such programmes identify specimens to the resolution of family rather than species. This is often because it is cheaper to obtain family level data than species level data. Choice of appropriate taxonomic resolution is a compromise between the cost of obtaining data at high taxonomic resolutions and the loss of information at lower resolutions. Optimum taxonomic resolution should be determined by the information required to address programme objectives. Costs saved in identifying macroinvertebrates to family level may not be justified if family level data can not give the answers required and expending the extra cost to obtain species level data may not be warranted if cheaper family level data retains sufficient information to meet objectives. We investigated the influence of taxonomic resolution and sample quantification (abundance vs. presence/absence) on the representation of aquatic macroinvertebrate species assemblage patterns and species richness estimates. The study was conducted in a physically harsh dryland river system (Condamine-Balonne River system, located in south-western Queensland, Australia), characterised by low macroinvertebrate diversity. Our 29 study sites covered a wide geographic range and a diversity of lotic conditions and this was reflected by differences between sites in macroinvertebrate assemblage composition and richness. The usefulness of expending the extra cost necessary to identify macroinvertebrates to species was quantified via the benefits this higher resolution data offered in its capacity to discriminate between sites and give accurate estimates of site species richness. We found that very little information (<6%) was lost by identifying taxa to family (or genus), as opposed to species, and that quantifying the abundance of taxa provided greater resolution for pattern interpretation than simply noting their presence/absence. Species richness was very well represented by genus, family and order richness, so that each of these could be used as surrogates of species richness if, for example, surveying to identify diversity hot-spots. It is suggested that sharing of common ecological responses among species within higher taxonomic units is the most plausible mechanism for the results. Based on a cost/benefit analysis, family level abundance data is recommended as the best resolution for resolving patterns in macroinvertebrate assemblages in this system. The relevance of these findings are discussed in the context of other low diversity, harsh, dryland river systems.


Marine and Freshwater Research | 2006

The macroinvertebrate fauna of an Australian dryland river: spatial and temporal patterns and environmental relationships

Jonathan C. Marshall; Fran Sheldon; Martin C. Thoms; Satish Choy

Waterholes within the dryland Cooper Creek, Lake Eyre Basin, Australia, are connected only during floods and are typically isolated for long periods. Spatial changes in the macroinvertebrate assemblages of 15 of these waterholes belonging to four regions were explored and these changes were related to environmental aspects of the waterholes measured at four spatial scales: floodplain, waterhole, within waterhole and sample habitat. To explore temporal patterns, one region was sampled on four occasions differing in time since connection. Spatial patterns were characterised by ‘differentiation by distance’ whereby samples collected closer to each other in the landscape were more similar in assemblage composition than those collected further apart. Thus, there were significant differences between the assemblages of the four regions. Although there was a correlation between macroinvertebrate spatial patterns and a combination of local habitat, geomorphology and water chemistry attributes, it appears unlikely that these variables were responsible for the faunal differentiation by distance. Temporal variability was larger than spatial variability and temporal assemblage patterns were best explained by the ‘connectivity potential’ of waterholes, reflecting the position of individual waterholes within the broader channel network and long-term connectivity relationships, rather than the actual time since hydrological connection.


Aquatic Sciences | 2011

Terrestrial invertebrates of dry river beds are not simply subsets of riparian assemblages

Alisha L. Steward; Jonathan C. Marshall; Fran Sheldon; Bronwyn Harch; Satish Choy; Stuart E. Bunn; Klement Tockner

Dry river beds are common worldwide and are rapidly increasing in extent due to the effects of water management and prolonged drought periods due to climate change. While attention has been given to the responses of aquatic invertebrates to drying rivers, few studies exist on the terrestrial invertebrates colonizing dry river beds. Dry river beds are physically harsh and they often differ substantially in substrate, topography, microclimate and inundation frequency from adjacent riparian zones. Given these differences, we predicted that dry river beds provide a unique habitat for terrestrial invertebrates, and that their assemblage composition differs from that in adjacent riparian zones. Dry river beds and riparian zones in Australia and Italy were sampled for terrestrial invertebrates with pitfall traps. Sites differed in substrate type, climate and flow regime. Dry river beds contained diverse invertebrate assemblages and their composition was consistently different from adjacent riparian zones, irrespective of substrate, climate or hydrology. Although some taxa were shared between dry river beds and riparian zones, 66 of 320 taxa occurred only in dry river beds. Differences were due to species turnover, rather than shifts in abundance, indicating that dry river bed assemblages are not simply subsets of riparian assemblages. Some spatial patterns in invertebrate assemblages were associated with environmental variables (irrespective of habitat type), but these associations were statistically weak. We suggest that dry river beds are unique habitats in their own right. We discuss potential human stressors and management issues regarding dry river beds and provide recommendations for future research.


Marine and Freshwater Research | 2005

Response of stream macroinvertebrates to changes in salinity and the development of a salinity index

Nelli Horrigan; Satish Choy; Jonathan C. Marshall; Friedrich Recknagel

Many streams and wetlands have been affected by increasing salinity, leading to significant changes in flora and fauna. The study investigates relationships between macroinvertebrate taxa and conductivity levels (µ Sc m −1 ) in Queensland stream systems. The analysed dataset contained occurrence patterns of frequently found macroinvertebrate taxa from edge (2580 samples) and riffle (1367 samples) habitats collected in spring and autumn over 8 years. Sensitivity analysis with predictive artificial neural network models and the taxon-specific mean conductivity values were used to assign a salinity sensitivity score (SSS) to each taxon (1—very tolerant, 5— tolerant, 10—sensitive). Salinity index (SI) based on the cumulative SSS was proposed as a measurement of change in macroinvertebrate communities caused by salinity increase. Changes in macroinvertebrate communities were observed at relatively low salinities, with SI rapidly decreasing to ∼800-1000 µ Sc m −1 and decreasing further at a slower rate. Natural variability and water quality factors were ruled out as potential primary causes of the observed changes by using partial canonical correspondence analysis and subsets of the data with only good water quality.


Ecological Modelling | 2001

Predictive modelling of macroinvertebrate assemblages for stream habitat assessments in Queensland (Australia)

Huong Hoang; Friedrich Recknagel; Jonathan C. Marshall; Satish Choy

This paper describes the iterative approach towards predictive Artificial Neural Network (ANN) models for 37 macroinvertebrate taxa based on 896 stream data sets from the Queensland stream system. Data preprocessing and sensitivity analyses proved to be crucial in order to create data consistency and non-redundancy in the context of this approach. The model validation by means of 167 independent data sets revealed 73% as lowest rate and 82% as average rate of correct ANN predictions of stream site habitats. The increase of correct predictions was 30%, if ANNs and the statistical stream model AusRivAS were compared based on the same data sets. The validation of the ANN models justified their application to the prediction and assessment of stream habitats based on an independent database for test sites. Implications to stream management and research were drawn from prediction results.


Marine and Freshwater Research | 2006

Spatial and temporal variation in algal-assemblage structure in isolated dryland river waterholes, Cooper Creek and Warrego River, Australia

Glenn B. McGregor; Jonathan C. Marshall; Martin C. Thoms

The scale at which algal biodiversity is partitioned across the landscape, and the biophysical processes and biotic interactions which shape these communities in dryland river refugia was studied on two occasions from 30 sites in two Australian dryland rivers. Despite the waterholes studied having characteristically high levels of abiogenic turbidity, a total of 186 planktonic microalgae, 253 benthic diatom and 62 macroalgal species were recorded. The phytoplankton communities were dominated by flagellated cryptophytes, euglenophytes and chlorophytes, the diatom communities by cosmopolitan taxa known to tolerate wide environmental conditions, and the macroalgal communities by filamentous cyanobacteria. All algal communities showed significant differences between catchments and sampling times, with a suite of between 5 and 12 taxa responsible for similar to 50% of the observed change. In general, algal assemblage patterns were poorly correlated with the measured environmental variables. Phytoplankton and diatom assemblage patterns were weakly correlated with several waterhole geomorphic measures, whereas macroalgal assemblage patterns showed some association with variability in ionic concentration.


Fisheries Science | 2012

Fish body condition and recruitment success reflect antecedent flows in an Australian dryland river

Stephen Richard Balcombe; Jaye S. Lobegeiger; Sharon M. Marshall; Jonathan C. Marshall; Diana Ly; Darryl Noel Jones

In fluctuating aquatic environments such as intermittent streams, fish condition is often highly variable due to the associated fluctuating levels of food resources. Having the physiological capacity to both metabolise and catabolise lipids, fish can survive through droughts and rapidly gain condition during flows and floods. Dryland rivers continuously cycle through periods of boom and bust due to their intermittent patterns of rainfall and flow. To help gain an understanding of how fish respond physiologically to varying antecedent flow conditions, we examined body condition measured by percent tissue water content of two generalist fish species in an Australian dryland river. We predicted that fish would be in better condition following recent flows and poorer condition when there had been no recent flows. Our expectations were met for both species with low water tissue content after high flows and high tissue water content after significant drying. It was also found that strong juvenile recruitment was also evident when body condition was high, indicating that when there are food resource spikes driven by flow pulses fish can utilise resources both to produce offspring and to store as lipid for future survival.


Ecological Applications | 2015

Fish population persistence in hydrologically variable landscapes

Nick R. Bond; Stephen Richard Balcombe; David A. Crook; Jonathan C. Marshall; Norbert Menke; Jaye S. Lobegeiger

Forecasting population persistence in environments subjected to periodic disturbances represents a general challenge for ecologists. In arid and semiarid regions, climate change and human water use pose significant threats to the future persistence of aquatic biota whose populations typically depend on permanent refuge waterholes for their viability. As such, habitats are increasingly being lost as a result of decreasing runoff and increasing water extraction. We constructed a spatially explicit population model for golden perch Macquaria ambigua (Richardson), a native freshwater fish in the Murray-Darling Basin in eastern Australia. We then used the model to examine the effects of increased aridity, increased drought frequency, and localized human water extraction on population viability. Consistent with current observations, the model predicted golden perch population persistence under the current climate and levels of water use. Modeled increases in local water extraction greatly increased the risk of population decline, while scenarios of increasing aridity and drought frequency were associated with only minor increases in this risk. We conclude that natural variability in abundances and high turnover rates (extinction/recolonization) of local populations dictate the importance of spatial connectivity and periodic cycles of population growth. Our study also demonstrates an effective way to examine population persistence in intermittent and ephemeral river systems by integrating spatial and temporal dynamics of waterhole persistence with demographic processes (survival, recruitment, and dispersal) within a stochastic modeling framework. The approach can be used to help understand the impacts of natural and anthropogenic drivers, including water resource development, on the viability of biota inhabiting highly dynamic environments.

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Jaye S. Lobegeiger

Cooperative Research Centre

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John Tibby

University of Adelaide

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Satish Choy

Queensland Department of Natural Resources and Mines

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Klement Tockner

Free University of Berlin

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Bronwyn Harch

Commonwealth Scientific and Industrial Research Organisation

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