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Dive into the research topics where Jonathan Cox is active.

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Featured researches published by Jonathan Cox.


Nature | 2002

Climate change and the resurgence of malaria in the East African highlands.

Simon I. Hay; Jonathan Cox; David J. Rogers; Sarah E. Randolph; David I. Stern; G D Shanks; Monica F. Myers; Robert W. Snow

The public health and economic consequences of Plasmodium falciparum malaria are once again regarded as priorities for global development. There has been much speculation on whether anthropogenic climate change is exacerbating the malaria problem, especially in areas of high altitude where P. falciparum transmission is limited by low temperature. The International Panel on Climate Change has concluded that there is likely to be a net extension in the distribution of malaria and an increase in incidence within this range. We investigated long-term meteorological trends in four high-altitude sites in East Africa, where increases in malaria have been reported in the past two decades. Here we show that temperature, rainfall, vapour pressure and the number of months suitable for P. falciparum transmission have not changed significantly during the past century or during the period of reported malaria resurgence. A high degree of temporal and spatial variation in the climate of East Africa suggests further that claimed associations between local malaria resurgences and regional changes in climate are overly simplistic.


Tropical Medicine & International Health | 2004

Spatial clustering of malaria and associated risk factors during an epidemic in a highland area of western Kenya

Simon Brooker; Siaˆn Clarke; Jk Njagi; Sarah Polack; Benbolt Mugo; Benson Estambale; Eric M. Muchiri; Pascal Magnussen; Jonathan Cox

The epidemiology of malaria over small areas remains poorly understood, and this is particularly true for malaria during epidemics in highland areas of Africa, where transmission intensity is low and characterized by acute within and between year variations. We report an analysis of the spatial distribution of clinical malaria during an epidemic and investigate putative risk factors. Active case surveillance was undertaken in three schools in Nandi District, Western Kenya for 10 weeks during a malaria outbreak in May–July 2002. Household surveys of cases and age‐matched controls were conducted to collect information on household construction, exposure factors and socio‐economic status. Household geographical location and altitude were determined using a hand‐held geographical positioning system and landcover types were determined using high spatial resolution satellite sensor data. Among 129 cases identified during the surveillance, which were matched to 155 controls, we identified significant spatial clusters of malaria cases as determined using the spatial scan statistic. Conditional multiple logistic regression analysis showed that the risk of malaria was higher in children who were underweight, who lived at lower altitudes, and who lived in households where drugs were not kept at home.


PLOS Medicine | 2011

The Influence of Distance and Level of Care on Delivery Place in Rural Zambia: A Study of Linked National Data in a Geographic Information System

Sabine Gabrysch; Simon Cousens; Jonathan Cox; Oona M. R. Campbell

Using linked national data in a geographic information system system, Sabine Gabrysch and colleagues investigate the effects of distance to care and level of care on womens use of health facilities for delivery in rural Zambia.


The Journal of Infectious Diseases | 2010

Identification of hot spots of malaria transmission for targeted malaria control.

Teun Bousema; Chris Drakeley; Samwel Gesase; Ramadhan Hashim; Stephen Magesa; Frank W. Mosha; Silas Otieno; Ilona Carneiro; Jonathan Cox; Eliapendavyo Msuya; Immo Kleinschmidt; Caroline Maxwell; Brian Greenwood; Eleanor M. Riley; Robert W. Sauerwein; Daniel Chandramohan; Roly Gosling

BACKGROUND Variation in the risk of malaria within populations is a frequently described but poorly understood phenomenon. This heterogeneity creates opportunities for targeted interventions but only if hot spots of malaria transmission can be easily identified. METHODS We determined spatial patterns in malaria transmission in a district in northeastern Tanzania, using malaria incidence data from a cohort study involving infants and household-level mosquito sampling data. The parasite prevalence rates and age-specific seroconversion rates (SCRs) of antibodies against Plasmodium falciparum antigens were determined in samples obtained from people attending health care facilities. RESULTS Five clusters of higher malaria incidence were detected and interpreted as hot spots of transmission. These hot spots partially overlapped with clusters of higher mosquito exposure but could not be satisfactorily predicted by a probability model based on environmental factors. Small-scale local variation in malaria exposure was detected by parasite prevalence rates and SCR estimates for samples of health care facility attendees. SCR estimates were strongly associated with local malaria incidence rates and predicted hot spots of malaria transmission with 95% sensitivity and 85% specificity. CONCLUSIONS Serological markers were able to detect spatial variation in malaria transmission at the microepidemiological level, and they have the potential to form an effective method for spatial targeting of malaria control efforts.


Malaria Journal | 2008

Dried blood spots as a source of anti-malarial antibodies for epidemiological studies

Patrick H. Corran; Jackie Cook; Caroline A. Lynch; Heleen Leendertse; Alphaxard Manjurano; Jamie T. Griffin; Jonathan Cox; Tarekegn A. Abeku; Teun Bousema; Azra C. Ghani; Chris Drakeley; Eleanor M. Riley

BackgroundBlood spots collected onto filter paper are an established and convenient source of antibodies for serological diagnosis and epidemiological surveys. Although recommendations for the storage and analysis of small molecule analytes in blood spots exist, there are no published systematic studies of the stability of antibodies under different storage conditions.MethodsBlood spots, on filter paper or glass fibre mats and containing malaria-endemic plasma, were desiccated and stored at various temperatures for different times. Eluates of these spots were assayed for antibodies against two Plasmodium falciparum antigens, MSP-119 and MSP2, and calculated titres used to fit an exponential (first order kinetic) decay model. The first order rate constants (k) for each spot storage temperature were used to fit an Arrhenius equation, in order to estimate the thermal and temporal stability of antibodies in dried blood spots. The utility of blood spots for serological assays was confirmed by comparing antibodies eluted from blood spots with the equivalent plasma values in a series of samples from North Eastern Tanzania and by using blood spot-derived antibodies to estimate malaria transmission intensity in this site and for two localities in Uganda.ResultsAntibodies in spots on filter paper and glass fibre paper had similar stabilities but blood was more easily absorbed onto filter papers than glass fibre, spots were more regular and spot size was more closely correlated with blood volume for filter paper spots. Desiccated spots could be stored at or below 4°C for extended periods, but were stable for only very limited periods at ambient temperature. When desiccated, recoveries of antibodies that are predominantly of IgG1 or IgG3 subclasses were similar. Recoveries of antibodies from paired samples of serum and of blood spots from Tanzania which had been suitably stored showed similar recoveries of antibodies, but spots which had been stored for extended periods at ambient humidity and temperature showed severe loss of recoveries. Estimates of malaria transmission intensity obtained from serum and from blood spots were similar, and values obtained using blood spots agreed well with entomologically determined values.ConclusionThis study has demonstrated the suitability of filter paper blood spots paper for collection of serum antibodies, and provided clear guidelines for the treatment and storage of filter papers which emphasize the importance of desiccation and minimisation of time spent at ambient temperatures. A recommended protocol for collecting, storing and assaying blood spots is provided.


Trends in Parasitology | 2002

Hot topic or hot air? Climate change and malaria resurgence in East African highlands

Simon I. Hay; David J. Rogers; Sarah E. Randolph; David I. Stern; Jonathan Cox; G. Dennis Shanks; Robert W. Snow

Climate has a significant impact on malaria incidence and we have predicted that forecast climate changes might cause some modifications to the present global distribution of malaria close to its present boundaries. However, it is quite another matter to attribute recent resurgences of malaria in the highlands of East Africa to climate change. Analyses of malaria time-series at such sites have shown that malaria incidence has increased in the absence of co-varying changes in climate. We find the widespread increase in resistance of the malaria parasite to drugs and the decrease in vector control activities to be more likely driving forces behind the malaria resurgence.


The Journal of Infectious Diseases | 2005

Altitude-Dependent and -Independent Variations in Plasmodium falciparum Prevalence in Northeastern Tanzania

Chris Drakeley; Ilona Carneiro; Hugh Reyburn; Robert Malima; John Lusingu; Jonathan Cox; Thor G. Theander; Watoky Mmm Nkya; Martha M. Lemnge; Eleanor M. Riley

BACKGROUND Effective malaria control requires information about intensity of transmission across large areas and populations. Estimates based on entomological factors lack precision and are not cost-effective to obtain. We tested altitude and rainfall measurements as correlates of transmission intensity in different ecological settings. METHODS We conducted 2 cross-sectional surveys of approximately 12,000 people (1-45 years old) in 6 altitude transects (150-1800 m) in the Kilimanjaro and Tanga regions of Tanzania. Data were analyzed for associations with altitude and rainfall estimates by use of appropriate regression models. RESULTS Plasmodium falciparum prevalence showed a negative relationship with altitude (19% and 21% decrease/100-m altitude increase, respectively, in children in Kilimanjaro and Tanga) and rainfall during the 3 months before the survey (46% decrease/100-mm rainfall increase in children in Kilimanjaro). Mean hemoglobin concentrations increased with altitude (0.05 and 0.09 g/dL/100-m altitude increase, respectively, in children in Kilimanjaro and Tanga) and rainfall (0.17 g/dL/100-mm rainfall increase in children and adults in Kilimanjaro). DISCUSSION Altitude and rainfall were correlated with parasite prevalence and mean hemoglobin concentration; however, the relationship varied according to ecological setting. Climatological variables alone cannot predict malarial outcomes. Local variations in seasonality of malaria transmission--together with vector species composition, topography, host and parasite genetics, and socioeconomic factors--may influence malaria prevalence.


Tropical Medicine & International Health | 1997

Predicting high-risk years for malaria in Colombia using parameters of El Niño Southern Oscillation.

Menno J. Bouma; Germán Poveda; William Rojas; Desmond Chavasse; Martha L. Quiñones; Jonathan Cox; Jonathan A. Patz

The interannual variation in malaria cases in Colombia between 1960 and 1992 shows a close association with a periodic climatic phenomenon known as El Niño Southern Oscillation (ENSO). Compared with other years, malaria cases increased by 17.3% during a Niño year and by 35.1% in the post‐Niño year. The annual total number of malaria cases is also strongly correlated (r= 0.62, P < 0.001) with sea surface temperature (SST) anomalies in the eastern equatorial Pacific, a principal parameter of ENSO. The strong relation between malaria and ENSO in Colombia can be used to predict high and low‐risk years for malaria with sufficient time to mobilize resources to reduce the impact of epidemics. In view of the current El Niño conditions, we anticipate an increase in malaria cases in Colombia in 1998. Further studies to elucidate the mechanisms which underlie the association are required. As Colombia has a wide range of climatic conditions, regional studies relating climate and vector ecology to malaria incidence may further improve an ENSO‐based early warning system. Predicting malaria risk associated with ENSO and related climate variables may also serve as a short‐term analogue for predicting longer‐term effects posed by global climate change.


Emerging Infectious Diseases | 2010

Serologic markers for detecting malaria in areas of low endemicity, Somalia, 2008.

Teun Bousema; Randa M. Youssef; Jackie Cook; Jonathan Cox; Victor A. Alegana; Jamal Ghilan Hefzullah Amran; Abdisalan M. Noor; Robert W. Snow; Chris Drakeley

These markers can identify spatial variations in transmission patterns.


Advances in Parasitology | 2000

Forecasting disease risk for increased epidemic preparedness in public health

Monica F. Myers; David J. Rogers; Jonathan Cox; Antoine Flahault; Simon I. Hay

Emerging infectious diseases pose a growing threat to human populations. Many of the worlds epidemic diseases (particularly those transmitted by intermediate hosts) are known to be highly sensitive to long-term changes in climate and short-term fluctuations in the weather. The application of environmental data to the study of disease offers the capability to demonstrate vector-environment relationships and potentially forecast the risk of disease outbreaks or epidemics. Accurate disease forecasting models would markedly improve epidemic prevention and control capabilities. This chapter examines the potential for epidemic forecasting and discusses the issues associated with the development of global networks for surveillance and prediction. Existing global systems for epidemic preparedness focus on disease surveillance using either expert knowledge or statistical modelling of disease activity and thresholds to identify times and areas of risk. Predictive health information systems would use monitored environmental variables, linked to a disease system, to be observed and provide prior information of outbreaks. The components and varieties of forecasting systems are discussed with selected examples, along with issues relating to further development.

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Teun Bousema

Radboud University Nijmegen

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Chrispin Owaga

Kenya Medical Research Institute

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Amrish Baidjoe

Radboud University Nijmegen Medical Centre

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Simon I. Hay

University of Washington

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