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Dive into the research topics where Jonathan D. R. Houghton is active.

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Featured researches published by Jonathan D. R. Houghton.


Nature | 2010

Environmental context explains Lévy and Brownian movement patterns of marine predators.

Nicolas E. Humphries; Nuno Queiroz; Jennifer R. M. Dyer; Nicolas G. Pade; Michael K. Musyl; Kurt M. Schaefer; Daniel W. Fuller; Juerg M. Brunnschweiler; Thomas K. Doyle; Jonathan D. R. Houghton; Graeme C. Hays; Catherine S. Jones; Leslie R. Noble; Victoria J. Wearmouth; Emily J. Southall; David W. Sims

An optimal search theory, the so-called Lévy-flight foraging hypothesis, predicts that predators should adopt search strategies known as Lévy flights where prey is sparse and distributed unpredictably, but that Brownian movement is sufficiently efficient for locating abundant prey. Empirical studies have generated controversy because the accuracy of statistical methods that have been used to identify Lévy behaviour has recently been questioned. Consequently, whether foragers exhibit Lévy flights in the wild remains unclear. Crucially, moreover, it has not been tested whether observed movement patterns across natural landscapes having different expected resource distributions conform to the theory’s central predictions. Here we use maximum-likelihood methods to test for Lévy patterns in relation to environmental gradients in the largest animal movement data set assembled for this purpose. Strong support was found for Lévy search patterns across 14 species of open-ocean predatory fish (sharks, tuna, billfish and ocean sunfish), with some individuals switching between Lévy and Brownian movement as they traversed different habitat types. We tested the spatial occurrence of these two principal patterns and found Lévy behaviour to be associated with less productive waters (sparser prey) and Brownian movements to be associated with productive shelf or convergence-front habitats (abundant prey). These results are consistent with the Lévy-flight foraging hypothesis, supporting the contention that organism search strategies naturally evolved in such a way that they exploit optimal Lévy patterns.


Journal of Experimental Marine Biology and Ecology | 2001

Thermal conditions in nests of loggerhead turtles: further evidence suggesting female skewed sex ratios of hatchling production in the Mediterranean

Brendan J. Godley; Annette C. Broderick; J.R. Downie; F. Glen; Jonathan D. R. Houghton; I. Kirkwood; S. Reece; Graeme C. Hays

Ž. Temperature was recorded in 23 nests of the loggerhead turtle Caretta caretta and control Ž XX . sites of nest depth at Alagadi 35833 N, 33847 E , Northern Cyprus, eastern Mediterranean. Control site sand temperature was found to be highly correlated with mean daily air temperature and mean nest temperature. Mean temperature in nests ranged from 29.58C to 33.28C, with mean temperature in the middle third of incubation ranging from 29.38C to 33.78C. Hatching success was significantly correlated with incubation temperature, with nests experiencing very high temperatures exhibiting low hatching success. All nests demonstrated regular diel variation in temperature with mean daily fluctuations ranging from 0.38C to 1.48C. Increase in temperature above that of the prevailing sand temperature attributed to metabolic heating was clearly demonstrated in 14 of 15 clutches, with the mean level of metabolic heating of all nests being 0.48C. However, the level of metabolic heating varied markedly throughout the incubation period with levels being significantly higher in the final third of incubation. Incubation duration was found to be significantly correlated to both the mean temperature of nests throughout the incubation period and during the middle third of incubation. The relationship between incubation duration and mean incubation temperature was used to estimate mean incubation temperatures at


The ISME Journal | 2015

Is there a common water-activity limit for the three domains of life?

Andrew Stevenson; Jonathan A. Cray; James P. Williams; Ricardo Santos; Richa Sahay; Nils Neuenkirchen; Colin D. McClure; Irene R. Grant; Jonathan D. R. Houghton; John P. Quinn; David J. Timson; Satish V. Patil; Rekha S. Singhal; Josefa Antón; Jan Dijksterhuis; Ailsa D. Hocking; Bart Lievens; Drauzio E.N. Rangel; Mary A. Voytek; Nina Gunde-Cimerman; Aharon Oren; Kenneth N. Timmis; Terry J. McGenity; John E. Hallsworth

Archaea and Bacteria constitute a majority of life systems on Earth but have long been considered inferior to Eukarya in terms of solute tolerance. Whereas the most halophilic prokaryotes are known for an ability to multiply at saturated NaCl (water activity (aw) 0.755) some xerophilic fungi can germinate, usually at high-sugar concentrations, at values as low as 0.650–0.605 aw. Here, we present evidence that halophilic prokayotes can grow down to water activities of <0.755 for Halanaerobium lacusrosei (0.748), Halobacterium strain 004.1 (0.728), Halobacterium sp. NRC-1 and Halococcus morrhuae (0.717), Haloquadratum walsbyi (0.709), Halococcus salifodinae (0.693), Halobacterium noricense (0.687), Natrinema pallidum (0.681) and haloarchaeal strains GN-2 and GN-5 (0.635 aw). Furthermore, extrapolation of growth curves (prone to giving conservative estimates) indicated theoretical minima down to 0.611 aw for extreme, obligately halophilic Archaea and Bacteria. These were compared with minima for the most solute-tolerant Bacteria in high-sugar (or other non-saline) media (Mycobacterium spp., Tetragenococcus halophilus, Saccharibacter floricola, Staphylococcus aureus and so on) and eukaryotic microbes in saline (Wallemia spp., Basipetospora halophila, Dunaliella spp. and so on) and high-sugar substrates (for example, Xeromyces bisporus, Zygosaccharomyces rouxii, Aspergillus and Eurotium spp.). We also manipulated the balance of chaotropic and kosmotropic stressors for the extreme, xerophilic fungi Aspergillus penicilloides and X. bisporus and, via this approach, their established water-activity limits for mycelial growth (∼0.65) were reduced to 0.640. Furthermore, extrapolations indicated theoretical limits of 0.632 and 0.636 aw for A. penicilloides and X. bisporus, respectively. Collectively, these findings suggest that there is a common water-activity limit that is determined by physicochemical constraints for the three domains of life.


Hydrobiologia | 2007

The broad-scale distribution of five jellyfish species across a temperate coastal environment

Thomas K. Doyle; Jonathan D. R. Houghton; Sarah M. Buckley; Graeme C. Hays; John Davenport

Jellyfish (medusae) are sometimes the most noticeable and abundant members of coastal planktonic communities, yet ironically, this high conspicuousness is not reflected in our overall understanding of their spatial distributions across large expanses of water. Here, we set out to elucidate the spatial (and temporal) patterns for five jellyfish species (Phylum Cnidaria, Orders Rhizostomeae and Semaeostomeae) across the Irish & Celtic Seas, an extensive shelf-sea area at Europe’s northwesterly margin encompassing several thousand square kilometers. Data were gathered using two independent methods: (1) surface-counts of jellyfish from ships of opportunity, and (2) regular shoreline surveys for stranding events over three consecutive years. Jellyfish species displayed distinct species-specific distributions, with an apparent segregation of some species. Furthermore, a different species composition was noticeable between the northern and southern parts of the study area. Most importantly, our data suggests that jellyfish distributions broadly reflect the major hydrographic regimes (and associated physical discontinuities) of the study area, with mixed water masses possibly acting as a trophic barrier or non-favourable environment for the successful growth and reproduction of jellyfish species.


Journal of Thermal Biology | 2002

Water temperature and internesting intervals for loggerhead (Caretta caretta) and green (Chelonia mydas) sea turtles

Graeme C. Hays; Annette C. Broderick; F. Glen; Brendan J. Godley; Jonathan D. R. Houghton; Julian D. Metcalfe

Temperature loggers were attached to the carapace of green turtles (Chelonia mydas) at Ascension Island and Cyprus and to loggerhead turtles (Caretta caretta) at Cyprus, in order to record the ambient temperature experienced by individuals during the internesting interval, i.e. the period between consecutive clutches being laid. Internesting intervals were relatively short (10–14 days) and mean ambient temperatures relatively warm (27–281C), compared to previous observations for these species nesting in Japan, although a single internesting interval versus temperature relationship described all the data for these two species from the different areas. The implication is that water temperature has both a common and a profound effect on the length of the internesting interval for these two species: internesting intervals are shorter when the water is warmer. r 2002 Elsevier Science Ltd. All rights reserved.


Reviews in Fish Biology and Fisheries | 2010

The biology and ecology of the ocean sunfish Mola mola: a review of current knowledge and future research perspectives

Edward C. Pope; Graeme C. Hays; Tierney Thys; Thomas K. Doyle; David W. Sims; Nuno Queiroz; Victoria J. Hobson; L. Kubicek; Jonathan D. R. Houghton

Relatively little is known about the biology and ecology of the world’s largest (heaviest) bony fish, the ocean sunfish Mola mola, despite its worldwide occurrence in temperate and tropical seas. Studies are now emerging that require many common perceptions about sunfish behaviour and ecology to be re-examined. Indeed, the long-held view that ocean sunfish are an inactive, passively drifting species seems to be entirely misplaced. Technological advances in marine telemetry are revealing distinct behavioural patterns and protracted seasonal movements. Extensive forays by ocean sunfish into the deep ocean have been documented and broad-scale surveys, together with molecular and laboratory based techniques, are addressing the connectivity and trophic role of these animals. These emerging molecular and movement studies suggest that local distinct populations may be prone to depletion through bycatch in commercial fisheries. Rising interest in ocean sunfish, highlighted by the increase in recent publications, warrants a thorough review of the biology and ecology of this species. Here we review the taxonomy, morphology, geography, diet, locomotion, vision, movements, foraging ecology, reproduction and species interactions of M. mola. We present a summary of current conservation issues and suggest methods for addressing fundamental gaps in our knowledge.


Naturwissenschaften | 2001

Asynchronous emergence by loggerhead turtle (Caretta caretta) hatchlings

Jonathan D. R. Houghton; Graeme C. Hays

Abstract. For many decades it has been accepted that marine turtle hatchlings from the same nest generally emerge from the sand together. However, for loggerhead turtles (Caretta caretta) nesting on the Greek Island of Kefalonia, a more asynchronous pattern of emergence has been documented. By placing temperature loggers at the top and bottom of nests laid on Kefalonia during 1998, we examined whether this asynchronous emergence was related to the thermal conditions within nests. Pronounced thermal variation existed not only between, but also within, individual nests. These within-nest temperature differences were related to the patterns of hatchling emergence, with hatchlings from nests displaying large thermal ranges emerging over a longer time-scale than those characterised by more uniform temperatures.


Journal of the Royal Society Interface | 2013

Identification of genetically and oceanographically distinct blooms of jellyfish

Patricia L. M. Lee; Michael N Dawson; Simon P. Neill; Peter E. Robins; Jonathan D. R. Houghton; Thomas K. Doyle; Graeme C. Hays

Reports of nuisance jellyfish blooms have increased worldwide during the last half-century, but the possible causes remain unclear. A persistent difficulty lies in identifying whether blooms occur owing to local or regional processes. This issue can be resolved, in part, by establishing the geographical scales of connectivity among locations, which may be addressed using genetic analyses and oceanographic modelling. We used landscape genetics and Lagrangian modelling of oceanographic dispersal to explore patterns of connectivity in the scyphozoan jellyfish Rhizostoma octopus, which occurs en masse at locations in the Irish Sea and northeastern Atlantic. We found significant genetic structure distinguishing three populations, with both consistencies and inconsistencies with prevailing physical oceanographic patterns. Our analyses identify locations where blooms occur in apparently geographically isolated populations, locations where blooms may be the source or result of migrants, and a location where blooms do not occur consistently and jellyfish are mostly immigrant. Our interdisciplinary approach thus provides a means to ascertain the geographical origins of jellyfish in outbreaks, which may have wide utility as increased international efforts investigate jellyfish blooms.


Hydrobiologia | 2007

Stranding events provide indirect insights into the seasonality and persistence of jellyfish medusae (Cnidaria : Scyphozoa)

Jonathan D. R. Houghton; Thomas K. Doyle; John Davenport; Martin K. S. Lilley; Rory P. Wilson; Graeme C. Hays

It is becoming increasingly evident that jellyfish (Cnidaria: Scyphozoa) play an important role within marine ecosystems, yet our knowledge of their seasonality and reproductive strategies is far from complete. Here, we explore a number of life history hypotheses for three common, yet poorly understood scyphozoan jellyfish (Rhizostoma octopus; Chrysaora hysoscella; Cyanea capillata) found throughout the Irish and Celtic Seas. Specifically, we tested whether (1) the bell diameter/wet weight of stranded medusae increased over time in a manner that suggested a single synchronised reproductive cohort; or (2) whether the range of sizes/weights remained broad throughout the stranding period suggesting the protracted release of ephyrae over many months. Stranding data were collected at five sites between 2003 and 2006 (n = 431 surveys; n = 2401 jellyfish). The relationship between bell diameter and wet weight was determined for each species (using fresh specimens collected at sea) so that estimates of wet weight could also be made for stranded individuals. For each species, the broad size and weight ranges of stranded jellyfish implied that the release of ephyrae may be protracted (albeit to different extents) in each species, with individuals of all sizes present in the water column during the summer months. For R. octopus, there was a general increase in both mean bell diameter and wet weight from January through to June which was driven by an increase in the variance and overall range of both variables during the summer. Lastly, we provide further evidence that rhizostome jellyfish may over-wintering as pelagic medusa which we hypothesise may enable them to capitalise on prey available earlier in the year.


Journal of the Marine Biological Association of the United Kingdom | 2006

The ocean sunfish Mola mola : insights into distribution, abundance and behaviour in the Irish and Celtic Seas

Jonathan D. R. Houghton; Thomas K. Doyle; John Davenport; Graeme C. Hays

Although modest, these ¢ndings highlight that the species is more common than once thought around Britain and Ireland and an order of magnitude greater than the other apex jelly¢sh predator found in the region, the leatherback turtle (Dermochelys coriacea). Furthermore, the distribution of sun¢sh sightings was inconsistent with the extensive aggregations of Rhizostoma octopus found throughout the study area. The modelled distributions of predator^ prey co-occurrence (using data for all three jelly¢sh species) was less than the observed co-occurrence with the implication that neither jelly¢sh nor sun¢sh were randomly distributed but co-occurred more in the same areas than expected by chance. Finally, observed sun¢sh were typically small (� 1m or less) and seen to either bask or actively swim at the surface.

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Chris Harrod

University of Antofagasta

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G.N. Lyons

Queen's University Belfast

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Tierney Thys

California Academy of Sciences

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David W. Sims

University of Southampton

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