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Dive into the research topics where Jonathan Helmus is active.

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Featured researches published by Jonathan Helmus.


Bulletin of the American Meteorological Society | 2015

The Emergence of Open-Source Software for the Weather Radar Community

Maik Heistermann; Scott Collis; Michael Dixon; S. Giangrande; Jonathan Helmus; B. Kelley; Jarmo Koistinen; Daniel Michelson; Markus Peura; Thomas Pfaff; D. B. Wolff

AbstractWeather radar analysis has become increasingly sophisticated over the past 50 years, and efforts to keep software up to date have generally lagged behind the needs of the users. We argue that progress has been impeded by the fact that software has not been developed and shared as a community.Recently, the situation has been changing. In this paper, the developers of a number of open-source software (OSS) projects highlight the potential of OSS to advance radar-related research. We argue that the community-based development of OSS holds the potential to reduce duplication of efforts and to create transparency in implemented algorithms while improving the quality and scope of the software. We also conclude that there is sufficiently mature technology to support collaboration across different software projects. This could allow for consolidation toward a set of interoperable software platforms, each designed to accommodate very specific user requirements.


IEEE Transactions on Visualization and Computer Graphics | 2016

Finite-Time Lyapunov Exponents and Lagrangian Coherent Structures in Uncertain Unsteady Flows

Hanqi Guo; Wenbin He; Tom Peterka; Han-Wei Shen; Scott Collis; Jonathan Helmus

The objective of this paper is to understand transport behavior in uncertain time-varying flow fields by redefining the finite-time Lyapunov exponent (FTLE) and Lagrangian coherent structure (LCS) as stochastic counterparts of their traditional deterministic definitions. Three new concepts are introduced: the distribution of the FTLE (D-FTLE), the FTLE of distributions (FTLE-D), and uncertain LCS (U-LCS). The D-FTLE is the probability density function of FTLE values for every spatiotemporal location, which can be visualized with different statistical measurements. The FTLE-D extends the deterministic FTLE by measuring the divergence of particle distributions. It gives a statistical overview of how transport behaviors vary in neighborhood locations. The U-LCS, the probabilities of finding LCSs over the domain, can be extracted with stochastic ridge finding and density estimation algorithms. We show that our approach produces better results than existing variance-based methods do. Our experiments also show that the combination of D-FTLE, FTLE-D, and U-LCS can help users understand transport behaviors and find separatrices in ensemble simulations of atmospheric processes.


Bulletin of the American Meteorological Society | 2015

An Open Virtual Machine for Cross-Platform Weather Radar Science

Maik Heistermann; Scott Collis; Michael Dixon; Jonathan Helmus; Anders Henja; Daniel Michelson; Thomas Pfaff

In a recent BAMS article, it is argued that community-based Open Source Software (OSS) could foster scientific progress in weather radar research, and make weather radar software more affordable, flexible, transparent, sustainable, and interoperable.Nevertheless, it can be challenging for potential developers and users to realize these benefits: tools are often cumbersome to install; different operating systems may have particular issues, or may not be supported at all; and many tools have steep learning curves.To overcome some of these barriers, we present an open, community-based virtual machine (VM). This VM can be run on any operating system, and guarantees reproducibility of results across platforms. It contains a suite of independent OSS weather radar tools (BALTRAD, Py-ART, wradlib, RSL, and Radx), and a scientific Python stack. Furthermore, it features a suite of recipes that work out of the box and provide guidance on how to use the different OSS tools alone and together. The code to build the VM from source is hosted on GitHub, which allows the VM to grow with its community.We argue that the VM presents another step toward Open (Weather Radar) Science. It can be used as a quick way to get started, for teaching, or for benchmarking and combining different tools. It can foster the idea of reproducible research in scientific publishing. Being scalable and extendable, it might even allow for real-time data processing.We expect the VM to catalyze progress toward interoperability, and to lower the barrier for new users and developers, thus extending the weather radar community and user base.


Journal of Atmospheric and Oceanic Technology | 2017

Correction of Dual-PRF Doppler Velocity Outliers in the Presence of Aliasing

Patricia Altube; Joan Bech; Oriol Argemí; Tomeu Rigo; Nicolau Pineda; Scott Collis; Jonathan Helmus

AbstractIn Doppler weather radars, the presence of unfolding errors or outliers is a well-known quality issue for radial velocity fields estimated using the dual–pulse repetition frequency (PRF) technique. Postprocessing methods have been developed to correct dual-PRF outliers, but these need prior application of a dealiasing algorithm for an adequate correction. This paper presents an alternative procedure based on circular statistics that corrects dual-PRF errors in the presence of extended Nyquist aliasing. The correction potential of the proposed method is quantitatively tested by means of velocity field simulations and is exemplified in the application to real cases, including severe storm events. The comparison with two other existing correction methods indicates an improved performance in the correction of clustered outliers. The technique proposed is well suited for real-time applications requiring high-quality Doppler radar velocity fields, such as wind shear and mesocyclone detection algorithms,...


ieee pacific visualization symposium | 2017

Range likelihood tree: A compact and effective representation for visual exploration of uncertain data sets

Wenbin He; Xiaotong Liu; Han-Wei Shen; Scott Collis; Jonathan Helmus

Uncertain data visualization plays a fundamental role in many applications such as weather forecast and analysis of fluid flows. Exploring scalar uncertain data modeled as probability distribution fields is a challenging task because the underlying features are often more complex, and the data associated with each grid point are high dimensional. In this work, we present a compact and effective representation, called range likelihood tree, to summarize and explore probability distribution fields. The key idea is to decompose and summarize each complex probability distribution over a few representative subranges by cumulative probabilities, and allow users to consider the roles that different subranges play in understanding the probability distributions. In our method, the value domain is first partitioned into subranges, then the distribution at each grid point is transformed according to the cumulative probabilities of the points distribution in those subranges. Organizing the subranges into a hierarchical structure based on how these cumulative probabilities are spatially distributed in the grid points, the new range likelihood tree representation allows effective classification and identification of features through user query and exploration. We present an exploration framework with multiple interactive views to explore probability distribution fields, and provide guidelines for visual exploration using our framework. We demonstrate the effectiveness and usefulness of our approach in exploratory analysis using several representative uncertain data sets.


Journal of open research software | 2016

The Python ARM Radar Toolkit (Py-ART), a Library for Working with Weather Radar Data in the Python Programming Language

Jonathan Helmus; Scott Collis


Monthly Weather Review | 2016

On polarimetric radar signatures of deep convection for model evaluation: columns of specific differential phase observed during MC3E

Marcus van Lier-Walqui; Ann M. Fridlind; Andrew S. Ackerman; Scott Collis; Jonathan Helmus; Donald R. MacGorman; Kirk North; Pavlos Kollias; Derek J. Posselt


Archive | 2013

Python-ARM Radar Toolkit

Jonathan Helmus; Scott Collis


97th American Meteorological Society Annual Meeting | 2017

Toward an Open-Source, Python-Powered, Multi-Doppler Radar Analysis Suite

Timothy J. Lang; Christopher J. Schultz; Corey K. Potvin; Robert Jackson; Scott Collis; Jonathan Helmus; Brenda Dolan


37th Conference on Radar Meteorology | 2015

Statistical Evaluation of Three Distinct Automated Doppler Dealiasing Algorithms Using a Hand-Dealiased Shipborne Radar Dataset

Timothy J. Lang; Paul Hein; Themis G. Chronis; Tyler Castillo; Kacie Hoover; Scott Collis; Jonathan Helmus

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Scott Collis

Argonne National Laboratory

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Timothy J. Lang

Marshall Space Flight Center

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Ann M. Fridlind

Goddard Institute for Space Studies

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Brenda Dolan

Colorado State University

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Marcus van Lier-Walqui

Goddard Institute for Space Studies

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Michael Dixon

National Center for Atmospheric Research

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Wenbin He

Ohio State University

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Thomas Pfaff

University of Stuttgart

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