Jonathan N. Webb
University of Colorado Boulder
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Featured researches published by Jonathan N. Webb.
Proceedings of the National Academy of Sciences of the United States of America | 2001
Jonathan N. Webb; Serena D. Webb; Jeffrey L. Cleland; John F. Carpenter; Theodore W. Randolph
The equilibrium dissociation of recombinant human IFN-γ was monitored as a function of pressure and sucrose concentration. The partial molar volume change for dissociation was −209 ± 13 ml/mol of dimer. The specific molar surface area change for dissociation was 12.7 ± 1.6 nm2/molecule of dimer. The first-order aggregation rate of recombinant human IFN-γ in 0.45 M guanidine hydrochloride was studied as a function of sucrose concentration and pressure. Aggregation proceeded through a transition-state species, N*. Sucrose reduced aggregation rate by shifting the equilibrium between native state (N) and N* toward the more compact N. Pressure increased aggregation rate through increased solvation of the protein, which exposes more surface area, thus shifting the equilibrium away from N toward N*. The changes in partial molar volume and specific molar surface area between the N* and N were −41 ± 9 ml/mol of dimer and 3.5 ± 0.2 nm2/molecule, respectively. Thus, the structural change required for the formation of the transition state for aggregation is small relative to the difference between N and the dissociated state. Changes in waters of hydration were estimated from both specific molar surface area and partial molar volume data. From partial molar volume data, estimates were 25 and 128 mol H2O/mol dimer for formation of the aggregation transition state and for dissociation, respectively. From surface area data, estimates were 27 and 98 mol H2O/mol dimer. Osmotic stress theory yielded values ≈4-fold larger for both transitions.
Biotechnology Progress | 2000
Jonathan N. Webb; John F. Carpenter; Theodore W. Randolph
The stabilities of subtilisin and lysozyme under hydrostatic pressures up to 200 MPa were investigated for up to 7 days at 25 °C. Methods were chosen to assess changes in tertiary and secondary protein structure as well as aggregation state. Tertiary structure was monitored in situ with second derivative UV spectroscopy and after pressure treatment by dynamic light scattering and second derivative UV spectroscopy. Secondary structure and potential secondary structural changes were characterized by second derivative FTIR spectroscopy. Changes in aggregation state were assessed using dynamic light scattering. Additionally, protein concentration balances were carried out to detect any loss of protein as a function of pressure. For the conditions tested, neither protein shows measurable changes in tertiary or secondary structure or signs of aggregation. Lysozyme concentration balances show no dependence on pressure. Subtilisin concentration balances at high protein concentration (4 mg/mL and higher) do not show pressure dependence. However, the concentration balances carried out at 0.4 mg/mL show a clear sign of pressure dependence. These results may be explained by protein interaction with the vial surface and appear to be rate limited by the equilibrium between active and inactive protein on the surface. Pressure increases protein loss, and the estimated partial molar volume change between the two states is estimated to be −20 ± 10 mL/mol.
Biotechnology and Bioengineering | 2011
D. Brett Ludwig; Jonathan N. Webb; Cristina Fernández; John F. Carpenter; Theodore W. Randolph
Under conditions relevant to the manufacturing of insulin (e.g., pH 3, room temperature), biosynthetic human insulin (BHI), and Lispro insulin (Lispro) require a nucleation step to initiate aggregation. However, upon seeding with preformed aggregates, both insulins rapidly aggregate into nonnative fibrils. Far ultraviolet circular dichroism (far‐UV CD) and second derivative Fourier transform infrared (2D‐FTIR) spectroscopic analyses show that the fibrillation process involves a change in protein secondary structure from α‐helical in native insulin to predominantly β‐sheet in the nonnative fibrils. After seeding, Lispro aggregates faster than BHI, likely because of a reduced propensity to reversibly self‐associate. Composition gradient multi‐angle light scattering (CG‐MALS) analyses show that Lispro is more monomeric than BHI, whereas their conformational stabilities measured by denaturant‐induced unfolding are statistically indistinguishable. For both BHI and Lispro, as the protein concentration increases, the apparent first‐order rate constant for soluble protein loss decreases. To explain these phenomena, we propose an aggregation model that assumes fibril growth through monomer addition with competitive inhibition by insulin dimers. Biotechnol. Bioeng. 2011;108: 2359–2370.
Biochemistry | 2002
Sampathkumar Krishnan; Eva Y. Chi; Jonathan N. Webb; Byeong S. Chang; Daxian Shan; Merrill Goldenberg; Mark C. Manning; Theodore W. Randolph; John F. Carpenter
Journal of Crystal Growth | 2000
R.Y. Waghmare; Jonathan N. Webb; Theodore W. Randolph; Maurice A. Larson; Charles E. Glatz
Journal of Crystal Growth | 1999
Jonathan N. Webb; R.Y. Waghmare; John F. Carpenter; Charles E. Glatz; Theodore W. Randolph
Biopharm | 2002
Serena D. Webb; Jonathan N. Webb; Timethy G. Hughes; David F. Sesin; Aimee C. Kincaid
Archive | 2003
Theodore W. Randolph; John F. Carpenter; Richard J. St. John; Jonathan N. Webb
Archive | 2001
Theodore W. Randolph; John F. Carpenter; John Richard; Jonathan N. Webb
Archive | 2001
John F. Carpenter; Theodore W. Randolph; John Richard J. San Francisco; Jonathan N. Webb