Jordi López-Pujol

Genetic Diversity in the Common Terrestrial Orchid Oreorchis patens and Its Rare Congener Oreorchis coreana: Inference of Species Evolutionary History and Implications for Conservation

We hypothesized that the main Korean mountain ranges provided many refugia for boreal plant species, where they likely found relatively stable habitats and maintained large population sizes. Under this scenario, high levels of genetic variation and low degree of differentiation among populations within these species were anticipated. To test this hypothesis, we examined levels of allozyme diversity (17 loci) in 12 populations of the common terrestrial montane orchid Oreorchis patens from the main ranges in Korea and 4 populations of its rare congener O. coreana, which is restricted to the Korean island of Jeju. As expected, O. patens harbored high levels of genetic variation within populations (%P = 62.8, A = 1.96, H (o) = 0.211, and H (e) = 0.237). Allele frequency differences among populations were low (F (ST) = 0.075), and the species also displayed a significant correlation between pairwise genetic differentiation and geographical distance. All these results suggest that extant populations were founded by multiple genetically diverse individuals and that most of this initial diversity would have been maintained in the stable mountainous conditions during Quaternary climatic oscillations. In contrast, we were unable to detect any genetic diversity in O. coreana, suggesting that contemporary populations likely originated from a single ancestral source population that had lost all genetic variability. From a long-term conservation genetics perspective, extreme rarity and small population sizes, coupled with its apparent genetic uniformity, place O. coreana at a high risk of extinction. Thus, both in situ and ex situ conservation efforts should be of particular importance for this species.

Biological invasions in rapidly urbanizing areas: a case study of Beijing, China.

Urbanization is widely recognized as a major factor promoting biological invasions worldwide. In this article, we provide insights into the patterns of biological invasions in Beijing, one of the largest and quickly urbanizing cities of the world, by developing a comprehensive list of naturalized and invasive flora and their associate traits (e.g., distribution, life form, habitat, or geographic origin). One hundred and twelve naturalized (including 48 invasive) plants have been identified within the Beijing Municipality. Most of the naturalized and invasive plants belong to four families (Asteraceae, Poaceae, Amaranthaceae, and Euphorbiaceae) and are annual herbs that preferentially grow in disturbed sites. North and South America are the main contributors to the naturalized and invasive flora of Beijing. As expected, those Beijing districts that have recently experienced the highest human population growth, urban expansion, and the largest economic growth are also those with the highest number of naturalized and invasive species. Urban expansion is predicted to continue in the near term making additional invasions likely that will significantly increase the proportion of introduced species in Beijing’s flora. An integrated management strategy for the whole municipality is urgently needed that includes comprehensive scientific research that documents the extent of invasions and their effects on Beijing’s economy and environment.

Mountains of Southern China as “Plant Museums” and “Plant Cradles”: Evolutionary and Conservation Insights

Abstract The occurrence of areas or centers of endemism is commonly attributed to the existence of suitable refugia in which plant lineages survived while others evolved during the late Neogene and Quaternary global cooling. In China, several studies performed since the 1980s have identified the mountains of central and southern China as the main centers of endemism in the country. A recent work studied the patterns of endemism separately for palaeoendemics and neoendemics and found that these tend to be located in different mountain ranges. Whereas, young endemics are preferably located in the mountain ranges of the eastern fringe of the Tibetan Plateau (“plant cradles”), old endemics tend to occur in the mountains of central, south central, and southeastern China (“plant museums”), although there are some exceptions. This pattern seems to be related to the different geological history of the mountain ranges. The eastern fringe of the Tibetan Plateau clearly constitutes the “evolutionary front” of China, probably due to the uninterrupted uplift of the plateau from the late Neogene. In contrast, the relative tectonic stability in central and southern China during most of the Tertiary may have maximized the persistence of relict plant lineages. These results have significant implications in the conservation of the endemic flora, which are briefly discussed.

Molecular phylogeography of Fagus engleriana (Fagaceae) in subtropical China: limited admixture among multiple refugia

Beech is one of the most important trees in the temperate and subtropical forests of the Northern Hemisphere. Despite Chinese beeches have the particularity that only grow in subtropical areas, they have received few phylogeographic research. In this study, we sampled 25 populations of the northernmost-distributed Chinese beech, Fagus engleriana, and detected six haplotypes across 350 individuals by using sequences of two chloroplast intergenic spacers. The chloroplast genetic diversity was relatively low (hT = 0.659), with most genetic variance residing among populations (GST = 0.831, NST = 0.855, GST≈NST). SAMOVA analysis indicated that populations clustered into six groups with little admixture among them (most groups were characterized by a unique hapotype). Pairwise difference among haplotypes and Fu’s Fs statistic indicated that populations of F. engleriana have not experienced recent sudden expansions. Both the phylogeographic and demographic patterns found in this study suggest that F. engleriana remained fragmented in multiple refugia throughout the Pleistocene climatic changes, and experienced limited both glacial and interglacial/postglacial expansion. The results of this study imply that long-term isolation among multiple refugia, coupled with little admixture among populations of different refugia provided numerous opportunities for population divergence and allopatric speciation, which might be a driving factor for the exceptionally broad temperate species diversity in southern China.

Comparative phylogeography of two sympatric beeches in subtropical China: Species‐specific geographic mosaic of lineages

In subtropical China, large-scale phylogeographic comparisons among multiple sympatric plants with similar ecological preferences are scarce, making generalizations about common response to historical events necessarily tentative. A phylogeographic comparison of two sympatric Chinese beeches (Fagus lucida and F. longipetiolata, 21 and 28 populations, respectively) was conducted to test whether they have responded to historical events in a concerted fashion and to determine whether their phylogeographic structure is exclusively due to Quaternary events or it is also associated with pre-Quaternary events. Twenty-three haplotypes were recovered for F. lucida and F. longipetiolata (14 each one and five shared). Both species exhibited a species-specific mosaic distribution of haplotypes, with many of them being range-restricted and even private to populations. The two beeches had comparable total haplotype diversity but F. lucida had much higher within-population diversity than F. longipetiolata. Molecular dating showed that the time to most recent common ancestor of all haplotypes was 6.36 Ma, with most haplotypes differentiating during the Quaternary. [Correction added on 14 October 2013, after first online publication: the timeunit has been corrected to ‘6.36’.] Our results support a late Miocene origin and southwards colonization of Chinese beeches when the aridity in Central Asia intensified and the monsoon climate began to dominate the East Asia. During the Quaternary, long-term isolation in subtropical mountains of China coupled with limited gene flow would have lead to the current species-specific mosaic distribution of lineages.

Biodiversity and the Three Gorges Reservoir: a troubled marriage

The Three Gorges region, located on the upper reaches of the Yangtze River in central China, is considered one of the most important biodiversity hotspots in China. It harbours more than 6000 plant species, over 500 terrestrial vertebrates, and about 160 species of fish. In addition to this taxonomic richness, the region is home to many endemic and threatened taxa, which may be the result of its role as a glacial refuge. The construction of the Three Gorges Dam may have serious consequences for this biodiversity. The flooding of more than 600 km2 together with massive population resettlement will involve the loss and/or fragmentation of many terrestrial habitats in the reservoir area, affecting both plant and animal species. Furthermore, negative effects on downstream terrestrial biodiversity are expected due to the regression of floodplains and riparian wetlands after the dam is completed. The alteration of river flow caused by the dam will also have a severe impact on freshwater biodiversity throughout the whole Yangtze River system, especially on migratory fish but also on other aquatic life, such as the emblematic Yangtze River dolphin. The conservation measures implemented by the authorities, although valuable, may well be insufficient to mitigate the negative effects of the dam on biodiversity.

Population genetics and conservation priorities for the critically endangered island endemic Delphinium pentagynum subsp. formenteranum (Ranunculaceae)

Isozyme electrophoresis was used to evaluate levels of genetic diversity and population genetic structure of the critically endangered (CR) perennial larkspur, Delphinium pentagynum subsp. formenteranum (Ranunculaceae), endemic to the island of Formentera (Balearic Islands, Spain). There is only one known population for this taxon, containing only 480 individuals. Moderate values of diversity were detected (P = 40.7%, A = 1.6 and He = 0.180), within the range observed in other surveyed larkspurs, but higher than most island endemics. Moderate levels of inbreeding were detected, probably as a consequence of the populations genetic structuring (biparental inbreeding). Threats to this taxon are mainly anthropogenic (fires, grazing, pathway works, and building pressures), although given that only one population exists, stochastic risks cannot be ignored. Conservation of D. pentagynum subsp. formenteranum requires in situ strategies, such as implementing a monitoring program and establishing a ‘botanical reserve’, and ex situ strategies, such as collection and long-term storage of seeds.

Genetic Variation and Structure within 3 Endangered Calanthe Species (Orchidaceae) from Korea: Inference of Population-Establishment History and Implications for Conservation

It is thought that the warm-temperate vegetation of Korea, which at present is limited to southern coastal areas, was founded by individuals from glacial refugia putatively located in southern Japan and/or southern China. Two scenarios of postglacial recolonization can be hypothesized: 1) extant Korean populations are derived from multiple source populations or, 2) they originated from a single source. To test which of these scenarios is more likely, we surveyed patterns of genetic diversity in 3 congeneric terrestrial orchids that are typical of Korean warm-temperate vegetation, Calanthe discolor, C. sieboldii, and C. reflexa. In total, we studied 14 populations with 17 allozyme loci. To complement the study, we also tested the 2 scenarios with previous population-genetics data reported for other warm-temperate plant species native to Korea. Levels of genetic variation in the 3 Calanthe species were substantially higher than those typical of allozyme-based studies in other terrestrial orchid species, which clearly suggest a pattern of postglacial recolonization fitting the first scenario. However, previous studies with native Korean species showed equivocal patterns and suggest conflicting scenarios. The Calanthe species studied here and the previous genetic surveys conducted on other species indicate that the establishment of contemporary warm-temperate vegetation in Korea has been diverse since deglaciation. From a conservation perspective, C. reflexa should be regarded as endangered in Korea, needing special attention to preserve its current genetic diversity and to prevent further decreases in population sizes.

Conservation assessment of Aquilegia paui (Ranunculaceae): a case study of an extremely narrow endemic.

The extremely rare Aquilegia paui (Ranunculaceae) was described in 1920 but was not found again until 1999, when it was discovered in the Parc Natural dels Ports in Tarragona Province, Spain. This species had been confused with the widespread A. vulgaris and consequently its taxonomic and conservation status had been misinterpreted. Based on the limited range of A. paui and the level of disturbance of its habitat we recommend that it is categorized as Endangered on the IUCN Red List. We summarize the conservation actions available for such extremely narrow endemic plant species and make appropriate recommendations for the conservation of A. paui .

Population history of the two carnivorous plants Drosera peltata var. nipponica and Drosera rotundifolia (Droseraceae) in Korea

PREMISE OF THE STUDY Drosera peltata var. nipponica, an element of the East Asia warm-temperate vegetation, and D. rotundifolia, a widely distributed boreal species, reach one of their northernmost and southernmost limits, respectively, on the Korean Peninsula. Because the Last Glacial Maximum (LGM)-Holocene dynamics of warm-temperate and boreal paleovegetation differed considerably on the Peninsula, the population history of these two sundews is expected to be different, leaving differential imprints in their genetic structure. METHODS We investigated population genetic structure of D. peltata var. nipponica and D. rotundifolia in South Korea (10 populations of each for 20 allozyme loci) to infer their population history in this region. In addition, we compared the genetic variation harbored in the two sundews to those reported for other carnivorous and wetland plants. KEY RESULTS Drosera peltata var. nipponica showed no genetic diversity, whereas D. rotundifolia exhibited extremely low within-population variation (He = 0.005) and considerable among-population divergence (FST = 0.817). CONCLUSIONS Our results suggest that extant populations of D. peltata var. nipponica likely originated from a single ancestral population from southern Japan or southern China through postglacial dispersal. On the contrary, D. rotundifolia probably survived the LGM in situ, with extant populations derived from either one or several small source populations. We argue that separate conservation strategies should be employed, given that the two taxa have different ecological and demographic traits and harbor different levels of genetic diversity.