Jorge Curiel Yuste

Net ecosystem CO2 exchange of mixed forest in Belgium over 5 years

In this paper, we present and discuss the annual net ecosystem exchange (NEE) results from 5 years (1997–2001) of continuous eddy covariance measurements of CO2 flux above a mixed temperate forest. The forest was a 70-year-old coniferous (Scots pine)—deciduous mixture, with slow growth rate and a leaf area index (LAI) of about 3, and was part of the European CARBOEUROFLUX research network. Effects of the data pre-treatment and the gap filling method on annual NEE estimates were analyzed. The u∗-correction increased the annual NEE by + 61 gCm −2 per year on average. The maximum difference in annual NEE estimates from different gap filling methods amounted up to 13 0gCm −2 per year in a year with a large gap in the CO2 flux series. The estimated average annual NEE over the 5 years was + 110 gCm −2 per year (ranging from − 9 to 255 gCm −2 per year) when using the most defensible gap filling strategy. We also analyzed the inter-annual variability of carbon balance, which was found to be mainly dependent on the length of the growing season and on the annual temperature. The observation that this forest acted as a CO2 source contrasts with previous results from most other temperate forests.

Looking deeper into the soil: biophysical controls and seasonal lags of soil CO2 production and efflux.

We seek to understand how biophysical factors such as soil temperature (Ts), soil moisture (theta), and gross primary production (GPP) influence CO2 fluxes across terrestrial ecosystems. Recent advancements in automated measurements and remote-sensing approaches have provided time series in which lags and relationships among variables can be explored. The purpose of this study is to present new applications of continuous measurements of soil CO2 efflux (F0) and soil CO2 concentrations measurements. Here we explore how variation in Ts, theta, and GPP (derived from NASAs moderate-resolution imaging spectroradiometer [MODIS]) influence F0 and soil CO2 production (Ps). We focused on seasonal variation and used continuous measurements at a daily timescale across four vegetation types at 13 study sites to quantify: (1) differences in seasonal lags between soil CO2 fluxes and Ts, theta, and GPP and (2) interactions and relationships between CO2 fluxes with Ts, theta, and GPP. Mean annual Ts did not explain annual F0 and Ps among vegetation types, but GPP explained 73% and 30% of the variation, respectively. We found evidence that lags between soil CO2 fluxes and Ts or GPP provide insights into the role of plant phenology and information relevant about possible timing of controls of autotrophic and heterotrophic processes. The influences of biophysical factors that regulate daily F0 and Ps are different among vegetation types, but GPP is a dominant variable for explaining soil CO2 fluxes. The emergence of long-term automated soil CO2 flux measurement networks provides a unique opportunity for extended investigations into F0 and Ps processes in the near future.

Comparison of Fine Root Dynamics in Scots Pine and Pedunculate Oak in Sandy Soil

In this study, we investigated the relationship between the seasonality of vegetation cover and that of fine root processes in a man-made forest in northern Belgium. Due to their contrasting foliar development, we expected different seasonal patterns of fine root growth and standing biomass between Pedunculate oak (Quercus robur L.), and Scots pine (Pinus sylvestris L.). Biomass and necromass of fine and small roots were estimated by repeated core sampling in February, April, June, August and October 2003. Measurements showed that Pedunculate oaks maintained more live fine roots in winter than Scots pines. However, Scots pines produced more than twice as much fine roots in spring, such that in summer both species had similar root mass. Scots pine root production started before-, but declined during leaf unfolding. Pedunculate oak roots, in contrast, started elongating only after bud break. For both species, fine root production peaked in JuneJuly, but was more than offset by drought-induced mortality at the end of July and early August. Summer drought in 2003 was exceptionally long and intense, significantly reducing leaf area, killing most new roots, and inhibiting root decomposition, such that the obtained results cannot be typical for this forest.

Changes in soil bacterial community triggered by drought-induced gap succession preceded changes in soil C stocks and quality

The aim of this study was to understand how drought-induced tree mortality and subsequent secondary succession would affect soil bacterial taxonomic composition as well as soil organic matter (SOM) quantity and quality in a mixed Mediterranean forest where the Scots pine (Pinus sylvestris) population, affected by climatic drought-induced die-off, is being replaced by Holm-oaks (HO; Quercus ilex). We apply a high throughput DNA pyrosequencing technique and 13C solid-state Nuclear Magnetic Resonance (CP-MAS 13C NMR) to soils within areas of influence (defined as an surface with 2-m radius around the trunk) of different trees: healthy and affected (defoliated) pines, pines that died a decade ago and healthy HOs. Soil respiration was also measured in the same spots during a spring campaign using a static close-chamber method (soda lime). A decade after death, and before aerial colonization by the more competitive HOs have even taken place, we could not find changes in soil C pools (quantity and/or quality) associated with tree mortality and secondary succession. Unlike C pools, bacterial diversity and community structure were strongly determined by tree mortality. Convergence between the most abundant taxa of soil bacterial communities under dead pines and colonizer trees (HOs) further suggests that physical gap colonization was occurring below-ground before above-ground colonization was taken place. Significantly higher soil respiration rates under dead trees, together with higher bacterial diversity and anomalously high representation of bacteria commonly associated with copiotrophic environments (r-strategic bacteria) further gives indications of how drought-induced tree mortality and secondary succession were influencing the structure of microbial communities and the metabolic activity of soils.

Climate-induced die-off affects plant-soil-microbe ecological relationship and functioning

This study reports the relationship between the diversity and functioning of fungal and bacterial soil communities with vegetation in Mediterranean woodland that experienced severe die-off after a drought episode. Terminal restriction fragment length polymorfism (TRFLP) was used to describe microbial community structure and diversity five years after the episode in different habitats (Juniperus woodland, shrubland, grassland), when the vegetation had not yet recovered. Vegetation diversity was positively related to TRF bacterial richness under unaffected canopies and was higher in diverse grassland. Fungal TRF richness correlated with vegetation type, being greater in Juniperus woodland. Microbial respiration increased in grassland, whereas microbial biomass, estimated from soil substrate-induced respiration (SIR), decreased with bacterial diversity. Die-off increased bacterial richness and changed bacterial composition, particularly in Juniperus woodland, where herbaceous species increased, while fungal diversity was reduced in Juniperus woodland. Die-off increased microbial respiration rates. The impact on vegetation from extreme weather episodes spread to microbial communities by modifying vegetation composition and litter quantity and quality, particularly as a result of the increase in herbaceous species. Our results suggest that climate-induced die-off triggers significant cascade effects on soil microbial communities, which may in turn further influence ecosystem C dynamics.

Functional diversification within bacterial lineages promotes wide functional overlapping between taxonomic groups in a Mediterranean forest soil.

We investigated the relationship between taxonomy and functioning of soil bacterial communities in soils from a Mediterranean holm oak forest using a high-throughput DNA pyrosequencing technique. We used nonparametric tests (Mann-Whitney U-test) to evaluate the sensitivity of each single bacterial genus within the community to the fluctuations of plant physiological and environmental abiotic variables, as well as to fluctuations in soil microbial respiration. Within-lineage (phylum/class) functional similarities were evaluated by the distribution of the Mann-Whitney U-test standardized coefficients (z) obtained for all genera within a given lineage. We further defined different ecological niches and within-lineage degree of functional diversification based on multivariate analyses (principal component analyses, PCA). Our results indicate that strong within-lineage functional diversification causes extensive functional overlapping between lineages, which hinders the translation of taxonomic diversity into a meaningful functional classification of bacteria. Our results further suggest a widespread colonization of possible ecological niches as taxonomic diversity increases. While no strong functional differentiation could be drawn from the analyses at the phylum/class level, our results suggest a strong ecological niche differentiation of bacteria based mainly on the distinct response of Gram-positive and Gram-negative bacteria to fluctuations in soil moisture.

Habitat Fragmentation can Modulate Drought Effects on the Plant-soil-microbial System in Mediterranean Holm Oak (Quercus ilex) Forests

Ecological transformations derived from habitat fragmentation have led to increased threats to above-ground biodiversity. However, the impacts of forest fragmentation on soils and their microbial communities are not well understood. We examined the effects of contrasting fragment sizes on the structure and functioning of soil microbial communities from holm oak forest patches in two bioclimatically different regions of Spain. We used a microcosm approach to simulate the annual summer drought cycle and first autumn rainfall (rewetting), evaluating the functional response of a plant-soil-microbial system. Forest fragment size had a significant effect on physicochemical characteristics and microbial functioning of soils, although the diversity and structure of microbial communities were not affected. The response of our plant-soil-microbial systems to drought was strongly modulated by the bioclimatic conditions and the fragment size from where the soils were obtained. Decreasing fragment size modulated the effects of drought by improving local environmental conditions with higher water and nutrient availability. However, this modulation was stronger for plant-soil-microbial systems built with soils from the northern region (colder and wetter) than for those built with soils from the southern region (warmer and drier) suggesting that the responsiveness of the soil-plant-microbial system to habitat fragmentation was strongly dependent on both the physicochemical characteristics of soils and the historical adaptation of soil microbial communities to specific bioclimatic conditions. This interaction challenges our understanding of future global change scenarios in Mediterranean ecosystems involving drier conditions and increased frequency of forest fragmentation.

Holm oak decline triggers changes in plant succession and microbial communities, with implications for ecosystem C and N cycling

Background and aimsThe occurrence of drought-induced forest die-off events is projected to increase in the future, but we still lack complete understanding of its impact on plant-soil interactions, soil microbial diversity and function. We investigated the effects of holm oak (Quercus ilex) decline (HOD) on soil microbial community and functioning, and how these effects relate to changes in the herbaceous community.MethodsWe selected 30 holm oak trees with different defoliation degrees (healthy, affected and dead) and analyzed soil samples collected under the canopy (holm oak ecotype) and out of the influence (grassland ecotype) of each tree.ResultsHOD increased potential nitrogen (N) mineralization and decreased inorganic N concentrations. These results could be partially explained by changes in the herbaceous composition, an increased herbaceous abundance and changes in soil microbial functional diversity and structure, with HOD favoring bacteria against fungi. Moreover, herbaceous abundance and microbial functional diversity of holm oak and grassland ecotypes converged with HOD.ConclusionsOur results show that HOD triggers a cascade effect on plant understory and soil microbial communities, as well as a plant succession (savannization) process, where understory species colonize the gaps left by dead holm oaks, with important implications for ecosystem C and N budgets.

Winds induce CO2 exchange with the atmosphere and vadose zone transport in a karstic ecosystem

Andalusian regional government project GEOCARBO [P08-RNM-3721]; European Union ERDF funds; Spanish Ministry of Science and Innovation project SOILPROF [CGL2011-15276-E]; Spanish Ministry of Science and Innovation project CARBORAD [CGL2011-27493]; Spanish Ministry of Science and Innovation project GEISpain [CGL2014-52838-C2-1-R]; Marie Curie International Outgoing Fellowship within the 7th European Community Framework Programme, DIESEL project [625988]

I Simposio sobre interacciones planta-suelo (Madrid, 25-26 febrero 2016)

Bonache, J., de Mingo-Sancho, G., Serrada, J., Amengual, P., Perales, J., Martinez, R., Rodado, S., Albornos, E. 2016. Long-term monitoring and evaluation in Spanish National Parks Network. Ecosistemas 25(1): 31-48. Doi.: 10.7818/ECOS.2016.25-1.05 The Spanish National Parks Network, consisting of a selection of natural spaces containing a representative sample of the main existing natural systems in Spain, is a very appropriate setting for research and long-term monitoring, in which the rules protects and promotes the improvement of knowledge and its application to management. In this regard, the National Parks Agency develops, in collaboration with the Autonomous Communities and with specific Scientific advise, a Research Program and a Monitoring and Evaluation Plan of the National Parks Network, latter having programs of ecological, sociological monitoring and functional. The article briefly explains the various monitoring initiatives underway, with examples of outcomes in each: mapping of natural systems, productivity monitoring through remote sensing, monitoring plant health, common bird monitoring, studies of social perception etc. Future prospects and areas for improvement of long-term monitoring in the National Parks Network are explained taking into account the synergies with the LTER Network, which is useful for monitoring in National Parks, especially concerning the application of comparable protocols and information management.