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Dive into the research topics where José C. Xavier is active.

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Featured researches published by José C. Xavier.


The Auk | 2003

EFFECTS OF SATELLITE TRANSMITTERS ON ALBATROSSES AND PETRELS

Richard A. Phillips; José C. Xavier; J. P. Croxall

Abstract Effects of deployment of miniaturized transmitters and loggers have been well studied in penguins, but much less so in flying seabirds. We examined the effects of satellite tag (platform terminal transmitter, PTT) deployment in Black-browed (Thalassarche melanophris) and Gray-headed (T. chrysostoma) albatrosses at South Georgia and reviewed the recent literature for other albatrosses and petrels. In our study, although a few individuals may have slightly extended their foraging trips, overall there was no significant difference in trip duration, meal mass, breeding success, or rate of return in the next season between birds with PTTs and controls. By comparison, most other studies of albatrosses and petrels recorded extended trip durations and, in some cases, high rates of nest desertion following PTT attachment. That occurred particularly where transmitter loads exceeded 3% of adult mass. Extended trip durations may result from reduced flight efficiency, as well as the effect of capture and temporary restraint, but affected birds seem nonetheless to commute to representative foraging areas. To minimize device effects, we suggest that transmitter loads be reduced to a minimum, use of harnesses be avoided (particularly for breeding season deployments when tape attachment to feathers is an effective alternative), and careful attention be given to limiting handling times during incubation when some species are particularly sensitive to disturbance.


Global Change Biology | 2014

Climate change and Southern Ocean ecosystems I: how changes in physical habitats directly affect marine biota

Andrew Constable; Jessica Melbourne-Thomas; Stuart Corney; Kevin R. Arrigo; Christophe Barbraud; David K. A. Barnes; Nl Bindoff; Philip W. Boyd; A. Brandt; Daniel P. Costa; Andrew T. Davidson; Hugh W. Ducklow; Louise Emmerson; Mitsuo Fukuchi; Julian Gutt; Mark A. Hindell; Eileen E. Hofmann; Graham W. Hosie; Takahiro Iida; Sarah Jacob; Nadine M. Johnston; So Kawaguchi; Nobuo Kokubun; Philippe Koubbi; Mary-Anne Lea; Azwianewi B. Makhado; Ra Massom; Klaus M. Meiners; Michael P. Meredith; Eugene J. Murphy

Antarctic and Southern Ocean (ASO) marine ecosystems have been changing for at least the last 30 years, including in response to increasing ocean temperatures and changes in the extent and seasonality of sea ice; the magnitude and direction of these changes differ between regions around Antarctica that could see populations of the same species changing differently in different regions. This article reviews current and expected changes in ASO physical habitats in response to climate change. It then reviews how these changes may impact the autecology of marine biota of this polar region: microbes, zooplankton, salps, Antarctic krill, fish, cephalopods, marine mammals, seabirds, and benthos. The general prognosis for ASO marine habitats is for an overall warming and freshening, strengthening of westerly winds, with a potential pole-ward movement of those winds and the frontal systems, and an increase in ocean eddy activity. Many habitat parameters will have regionally specific changes, particularly relating to sea ice characteristics and seasonal dynamics. Lower trophic levels are expected to move south as the ocean conditions in which they are currently found move pole-ward. For Antarctic krill and finfish, the latitudinal breadth of their range will depend on their tolerance of warming oceans and changes to productivity. Ocean acidification is a concern not only for calcifying organisms but also for crustaceans such as Antarctic krill; it is also likely to be the most important change in benthic habitats over the coming century. For marine mammals and birds, the expected changes primarily relate to their flexibility in moving to alternative locations for food and the energetic cost of longer or more complex foraging trips for those that are bound to breeding colonies. Few species are sufficiently well studied to make comprehensive species-specific vulnerability assessments possible. Priorities for future work are discussed.


Global Change Biology | 2015

The Southern Ocean ecosystem under multiple climate change stresses ‐ an integrated circumpolar assessment

Julian Gutt; Nancy A. N. Bertler; Thomas J. Bracegirdle; Alexander Buschmann; Josefino C. Comiso; Graham W. Hosie; Enrique Isla; Irene R. Schloss; Craig R. Smith; Jean Tournadre; José C. Xavier

A quantitative assessment of observed and projected environmental changes in the Southern Ocean (SO) with a potential impact on the marine ecosystem shows: (i) large proportions of the SO are and will be affected by one or more climate change processes; areas projected to be affected in the future are larger than areas that are already under environmental stress, (ii) areas affected by changes in sea-ice in the past and likely in the future are much larger than areas affected by ocean warming. The smallest areas (<1% area of the SO) are affected by glacier retreat and warming in the deeper euphotic layer. In the future, decrease in the sea-ice is expected to be widespread. Changes in iceberg impact resulting from further collapse of ice-shelves can potentially affect large parts of shelf and ephemerally in the off-shore regions. However, aragonite undersaturation (acidification) might become one of the biggest problems for the Antarctic marine ecosystem by affecting almost the entire SO. Direct and indirect impacts of various environmental changes to the three major habitats, sea-ice, pelagic and benthos and their biota are complex. The areas affected by environmental stressors range from 33% of the SO for a single stressor, 11% for two and 2% for three, to <1% for four and five overlapping factors. In the future, areas expected to be affected by 2 and 3 overlapping factors are equally large, including potential iceberg changes, and together cover almost 86% of the SO ecosystem.


Polar Biology | 2002

Distribution of cephalopods recorded in the diet of the Patagonian toothfish (Dissostichus eleginoides) around South Georgia

José C. Xavier; Paul G. Rodhouse; M.G. Purves; T.M. Daw; J. Arata; G.M. Pilling

Abstract. The cephalopod component of the diet of Patagonian toothfish, Dissostichus eleginoides, around South Georgia was analysed from stomach contents collected between March and May 2000. Cephalopods occurred in 7% of D. eleginoides stomachs. A total of 363 cephalopod beaks were found, comprising 16 cephalopod species, of which 15 had not been previously recorded in the diet. Octopodid A (probably Pareledone turqueti) was the most important cephalopod species by number of lower beaks (36 beaks; 20.2% of the lower beaks) and Kondakovia longimana was the most important in terms of estimated mass (76% of the cephalopod component). When the cephalopod component of D. eleginoides was compared with other predators between March and May 2000, D. eleginoides fed more on octopods (25% of the lower beaks) than black-browed and grey-headed albatrosses (<1% of the lower beaks). The low frequency of the squid Martialia hyadesi in the diet of D. eleginoides around South Georgia was also noticed in the diet of albatrosses, and suggests that M. hyadesi was not present in these waters in 2000 (probably due to migratory movements or reproduction failure), despite being a candidate for commercial exploitation. The presence of the squid Mesonychoteuthis hamiltoni in the diet of D. eleginoides and being caught by a longline hook whilst presumably feeding on D. eleginoides, may indicate that juveniles of Mesonychoteuthis hamiltoni are prey of D. eleginoides adults, and when Mesonychoteuthis hamiltoni reach a large size as adults, they become the predator.


Reviews in Fish Biology and Fisheries | 2007

Applying new tools to cephalopod trophic dynamics and ecology: perspectives from the Southern Ocean Cephalopod Workshop, February 2-3, 2006

George D. Jackson; Paco Bustamante; Yves Cherel; Elizabeth A. Fulton; Eric P. M. Grist; Christine H. Jackson; Peter D. Nichols; Heidi Pethybridge; Katrina L. Phillips; Robert D. Ward; José C. Xavier

A two day workshop on Southern Ocean cephalopods was held in Hobart, Tasmania, Australia prior to the triennial 2006 Cephalopod International Advisory Council (CIAC) symposium. The workshop provided a second international forum to present the current state of research and new directions since the last Southern Ocean cephalopod meeting held in 1993. A major focus of the workshop was trophic ecology and the use of a variety of tools that can be applied in Southern Ocean trophic studies for both cephalopod and predator researchers. New tools that are being used as trophic indicators and tracers in food chain pathways include stable isotope, heavy metal and fatty acid signature analysis. Progress is also being made on understanding squid population dynamics in relation to other key components of the ecosystem by incorporating squid data in ecosystem models. Genetic barcoding is now of great value to fish taxonomy as well as other groups and it is expected that a cephalopod barcoding initiative will be an important tool for cephalopod taxonomy. There is a current initiative to produce a new cephalopod beak identification guide to assist predator biologists in identifying cephalopod prey items. There were also general discussions on specific taxonomic issues, Southern Ocean Cephalopod paralarvae and parasites, and suggestions for future CIAC workshop topics.


Journal of the Marine Biological Association of the United Kingdom | 2015

Future challenges in cephalopod research

José C. Xavier; A. Louise Allcock; Yves Cherel; Marek R. Lipinski; Graham J. Pierce; Paul G. Rodhouse; Rui Rosa; Elizabeth K. Shea; Jan M. Strugnell; Erica A. G. Vidal; Roger Villanueva; Alexander Ziegler

We thank Anto´nio M. de Frias Martins, past President of the Unitas Malacologica and Peter Marko, President of the American Malacological Society for organizing the 2013 World Congress of Malacology, and the Cephalopod International Advisory Committee for endorsing a symposium held in honour of Malcolm R. Clarke. In particular, we would like to thank the many professional staff from the University of the Azores for their hospitality, organization, troubleshooting and warm welcome to the Azores. We also thank Malcolm Clarke’s widow, Dorothy, his daughter Zoe¨, Jose´ N. Gomes-Pereira and numerous colleagues and friends of Malcolm’s from around the world for joining us at Ponta Delgada. We are grateful to Lyndsey Claro (Princeton University Press) for granting copyright permissions.


PLOS ONE | 2015

Age-related variation in foraging behaviour in the wandering albatross at South Georgia: no evidence for senescence.

Hannah Froy; Sue Lewis; Paulo Catry; Charles M. Bishop; Isaac P. Forster; Akira Fukuda; Hiroyoshi Higuchi; Ben Phalan; José C. Xavier; Daniel H. Nussey; Richard A. Phillips

Age-related variation in demographic rates is now widely documented in wild vertebrate systems, and has significant consequences for population and evolutionary dynamics. However, the mechanisms underpinning such variation, particularly in later life, are less well understood. Foraging efficiency is a key determinant of fitness, with implications for individual life history trade-offs. A variety of faculties known to decline in old age, such as muscular function and visual acuity, are likely to influence foraging performance. We examine age-related variation in the foraging behaviour of a long-lived, wide-ranging oceanic seabird, the wandering albatross Diomedea exulans. Using miniaturised tracking technologies, we compared foraging trip characteristics of birds breeding at Bird Island, South Georgia. Based on movement and immersion data collected during the incubation phase of a single breeding season, and from extensive tracking data collected in previous years from different stages of the breeding cycle, we found limited evidence for age-related variation in commonly reported trip parameters, and failed to detect signs of senescent decline. Our results contrast with the limited number of past studies that have examined foraging behaviour in later life, since these have documented changes in performance consistent with senescence. This highlights the importance of studies across different wild animal populations to gain a broader perspective on the processes driving variation in ageing rates.


Molecular Ecology | 2014

An holistic ecological analysis of the diet of Cory's shearwaters using prey morphological characters and DNA barcoding

Hany Rafael de Drummond Ludovice Garcia Alonso; José P. Granadeiro; Silke Waap; José C. Xavier; William Oliver Christian Symondson; Jaime A. Ramos; Paulo Catry

Knowledge of the dietary choices and trophic niches of organisms is the key to understanding their roles in ecosystems. In seabird diet studies, prey identification is a difficult challenge, often yielding results with technique‐specific biases. Additionally, sampling efforts are often not extensive enough to reveal intrapopulational variation. Immature animals, which may constitute up to 50% of a population, may occupy a significantly different trophic niche to more experienced birds, but this remains largely unexplored. We investigated the diet of Corys shearwater (Calonectris diomedea) from Selvagem Grande, an island located off the northwest African coast, collecting a total of 698 regurgitate samples over three consecutive breeding seasons. The diet was assessed using two complementary approaches for prey identification: conventional morphological analysis (using fish vertebrae, otoliths and cephalopod beaks) and DNA barcoding of the 16S rRNA mitochondrial gene, in cases where a positive identification could not be retrieved. Species assignments employed BLAST and distance‐based methods, as well as direct optimization of the tree length based on unaligned sequences in POY. This method resulted in robust tree estimates and species assignments, showing its potential for DNA barcoding of stomach contents using hypervariable markers such as the 16S. The molecular approach increased taxonomic resolution and revealed an additional 17 taxa. Diet differed significantly according to breeding status, sex, breeding phase (prelaying and chick rearing) and year. Such direct evidence of trophic segregation within the same population has rarely been shown in seabirds and highlights the importance of including such variables in ecosystem‐based management approaches.


Frontiers in Marine Science | 2016

Future Challenges in Southern Ocean Ecology Research

José C. Xavier; A. Brandt; Yan Ropert-Coudert; Renuka Badhe; Julian Gutt; Charlotte Havermans; Christopher D. Jones; Erli S. Costa; Karin Lochte; Irene R. Schloss; Mahlon C. Kennicutt; William J. Sutherland

The Southern Ocean is experiencing relentless change. The Antarctic and Southern Ocean community, represented by 75 scientists and policy-makers from 22 countries, recently met to formulate a collective vision on the priorities for Antarctic research for the next two decades and beyond. Here, we assess high-interest research areas related specifically to Southern Ocean life and ecology that, although not all retained as the 80 top priorities among the addressed scientific domains, are of considerable relevance to the biology and ecology of the Southern Ocean. As certain regions of the Southern Ocean ecosystems have witnessed abiotic and biotic changes in the last decades (e.g. warming, changes in sea ice and abundance of marine organisms), such an exercise was urgently needed. We concluded that basic biological information on the taxonomy of numerous organisms is still lacking in areas such as the deep-ocean floor or the under-ice environments. Furthermore, there is a need for knowledge about the response and resilience of Antarctic marine ecosystems to change. The continuation of a long-term commitment and the development and use of innovative technology to adequately monitor the Southern Ocean ecosystems is required. Highlighting the most important Southern Ocean research topics allow the identification of the challenges and future requirements in technological development, and both research and funding strategies for the various stakeholders


Journal of Fish Biology | 2011

The diet of toothfish species Dissostichus eleginoides and Dissostichus mawsoni with overlapping distributions

J. Roberts; José C. Xavier; D.J. Agnew

The diets of Antarctic toothfish Dissostichus mawsoni and Patagonian toothfish Dissostichus eleginoides were examined around the South Sandwich Islands in the Southern Ocean, one of few regions with overlapping populations of the two species. Despite large differences in the proportion of stomachs containing prey (76·2% of D. mawsoni compared to 7·2% of D. eleginoides), diet composition was broadly similar (Schoener overlap index of 74·4% based on prey mass) with finfishes (particularly macrourids and muraenolepidids) and cephalopods (mainly Kondakovia longimana) comprising >90% of the prey mass of both species. Predation rates of the main fish prey, as mean counts per stomach sampled, were spatially correlated with their relative abundance around the islands derived from fishery by-catch data, suggesting a general lack of prey selectivity. This study supports the view that bathyal Dissostichus are opportunistic carnivores and finds that D. mawsoni and D. eleginoides occupy a similar trophic niche and are likely to compete for prey in regions where both are distributed. The large increase in rate of prey occurrence and size of prey in D. mawsoni stomachs relative to D. eleginoides suggests, however, species differences in feeding behaviour, which may reflect the increased metabolic demands of a cold-water adapted physiology. [Correction added after online publication 13 June 2011: spelling of species name corrected].

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Yves Cherel

University of La Rochelle

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Richard A. Phillips

Natural Environment Research Council

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J. P. Croxall

Natural Environment Research Council

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Irene R. Schloss

Instituto Antártico Argentino

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