José Lino Costa

Seasonal and spatial patterns of distribution of subtidal benthic invertebrate communities in the Mondego River, Portugal : a poikilohaline estuary

The use of benthic assemblages to assess ecological quality of estuarine environments is a major tool for the implementation of the Water Framework Directive (2000/60/CE) for European aquatic ecosystems. Benthic communities show spatially heterogeneous distributions and experience seasonal variations due to both natural and anthropogenic stresses. The major goal of this study was to quantify the relationships between environmental gradients and the spatial and temporal patterns of the benthic communities along a Portuguese estuary. Seasonal and spatial variations relating macrobenthic communities and measures of water and sediment quality along the northern branch of the Mondego River estuary were examined at seven sampling stations from July 2000 to June 2001. Cluster analysis of biological data indicated three major groups of communities based on spatial distribution patterns: (1) a lower sector with stronger marine influence and dominated by Streblospio shrubsolii and Cerastoderma glaucum; (2) a middle sector with dominance of S. shrubsolii and Corophium multisetosum; (3) and an upper sector where C. multisetosum dominates a community characterized by a lower number of species. Canonical correspondence analyses of biological and environmental data determined a major salinity gradient influencing benthic communities. Seasonal changes of benthic communities were mainly determined by freshwater input and salinity changes that imposed a strong decrease in densities and number of species during winter, followed by a recovery during spring. Benthic ecological structure and contaminant levels indicated that the Mondego northern branch is moderately disturbed, although opportunistic species dominated the benthic community, suggesting that natural and anthopogenic sources of stress may be acting together. The Mondego River estuary, a poikilohaline-type estuary, characterized by strong seasonal changes in water flow and salinity, cannot be consistently stratified into salinity regions based upon the Venice classi- fication system. Biotic communities, exemplified here by the benthic communities, are seasonally displaced, compared to a homiohaline-type estuary where the Venice system can be applied without modification. Future identification of reference conditions and design of monitoring programs cannot be accomplished without understanding how interactions between biotic and physico-chemical dynamics differ between homiohaline and poikilohaline estuaries. Results obtained in this study could be used to assist future assessments in other Portuguese estuaries.

River flow influence on the fish community of the Tagus estuary (Portugal)

The influence of river flow on the fish community was assessed for the Tagus estuary (Portugal), based on sampling surveys carried out between 1979 and 2002. Four estuarine areas were sampled using similar fishing gear and effort in all the years considered in this study (1978–1980; 1995–1997; and 2001–2002). According to river freshwater flow values, sampling years were classified as wet (mean value of 714 m3 s−1, sd = 110 m3 s−1) or dry (mean value of 164 m3 s−1, sd = 19m3 s−1). Species richness varied between 22 and 39 according to the year, but no significant differences were related to river flow. The number of species per ecological guild was also similar in wet and dry years. Fish assemblage was dominated by marine occasional, estuarine resident and marine-estuarine opportunist species that represented near 90% of all fish species. The highest densities were represented by estuarine resident species. Fish density in dry and wet years differed significantly (mean density of 10.51 individuals 1,000 m−2 and 3.62 individuals 1,000 m−2, respectively), and the major differences were registered for estuarine resident, marine-estuarine opportunist and catadromous species. These differences probably reflected the estuarine habitat availability and also differences in fish densities in some estuarine areas under different flow conditions. The multivariate ordination analyses performed outlined both seasonal and spatial variation trends in fish distribution and abundance. The estuarine longitudinal gradient and its relationship with species distribution were less evident in dry years. Relationships between species abundance and river flow were different according to species, which is probably due to different needs in the timing and magnitude of river flow.

Use of multimetric indices to classify estuaries with different hydromorphological characteristics and different levels of human pressure.

The assessment of estuaries based on benthic communities is widely used to determine impacts caused by human pressure and is one of the required tools for the implementation of the European Water Framework Directive (WFD). Our study compared multimetric approaches (B-IBI and TICOR) to assess the benthic condition of three Portuguese estuaries (Mondego, Tejo, and Mira rivers) with different levels of natural and human induced stress. Benthic community condition was classified into quality status categories of the WFD and compared for consistency with a priori status categories based upon physical-chemical criteria. Both multimetric indices discriminated equally well between locations classified above or below the good status category but were unable to provide good separation between other quality classes (high/good, moderate, poor/bad). Metrics included in these indices are greatly affected by natural stress and we recommend the development of habitat-specific thresholds to increase the discriminatory ability of any benthic condition index.

Trophic relationships in the community of the upper Tagus estuary (Portugal): A preliminary approach

The diet of 25 invertebrate and fish species occurring in the upper Tagus estuary are compared. Multivariate methods are used to define trophic groups and identify key prey species, fundamental links in the understanding of the estuarine food web. Four trophic groups are described: microalgae, macroinfauna, mysid and fish and decapod eaters. It was found that the food web of this area heavily relies on the polychaete Nereis diversicolor and the crustacean Crangon crangon .

Structure and dynamics of a benthic invertebrate community in an intertidal area of the Tagus estuary, western Portugal: a six year data series

The intertidal benthic invertebrate community adjacent to “Parque das Nac o es”, Tagus estuary, western Portugal, was studied at seven sites between October of 1996 and 2002. Grain size analysis revealed that the area was essentially muddy with total organic matter ranging from 5.4 to 11.4%. Annelida represented more than 85% of the total abundance. The dominant taxa were Oligochaeta, Streblospio shrubsolii, Scrobicularia plana, Hediste diversicolor, Hydrobia ulvae and Cirratulidae. Analysis of abundance revealed high seasonal and interannual heterogeneity, although clear aggregations between winter/spring and summer/autumn sampling periods were detected by multivariate techniques. Paragnathia formica and Dolichopodidae were closely related to winter/spring cluster while S. shrubsolii, Cossura sp., S. plana and Corbula gibba were associated to the summer/autumn aggregation. Although other taxa were abundant in several seasons, constancy in their numbers throughout the year could be observed. Temperature, rainfall and daylight hours were the environmental variables best related to the biological data. Temperature and daylight hours were important for the establishment of the two seasonal aggregations. Rainfall has also shown to be an essential factor on the structuring of this intertidal community, closely related to the abundance increase of Cirratulidade and decrease of Polydora sp., Nephtys spp., Cerastoderma glaucum, Corophium spp. and other Gammaridea. Sediment composition seems to play an important role in changing the community characteristics during the year since some species abundance appear to be favoured by coarser particles and many by fine sediments.

Taxonomic sufficiency as a useful tool for typology in a poikilohaline estuary

Taxonomic sufficiency has been used mainly to assess benthic condition, based on the assumption that taxa can be identified to a taxonomic level higher than the species level without losing the ability to detect changes related to pollution stress. Identifying taxa to a higher level reduces the expertise and time needed to identify organisms and consequently allows increased spatial and temporal replication. The usefulness of taxonomic sufficiency for typology (identification of water body types) was examined using the benthic communities of the Mondego River estuary (Portugal). Benthic samples were collected seasonally along the Northern branch of the Mondego River estuary from July 2000 to June 2001 and several environmental parameters were measured simultaneously. Cluster analysis of species data indicated three major ecological groups, mainly related to a saline gradient along the estuary. The same groups were found when taxa were aggregated to higher taxonomic levels (genus, family, order, class), except for the phylum level. The overall spatial pattern was driven by: (1) the dominance of bivalves and the occurrence of rare marine species in the Lower Estuary; (2) the dominance of polychaetes in the Middle Estuary; (3) and the dominance of arthropods in the Upper Estuary. The ability of different taxocenes to discriminate the three ecological groups was also examined. Mollusca and Bivalvia were the only taxocenes producing the same groupings, although other taxocenes (Annelida, Polychaeta, Spionidae, Arthropoda) showed a significant ability to discriminate between all three groups. Compared to using all taxa identified to the lowest possible taxonomic level, our results indicate that for typology (1) several higher taxonomic levels were sufficient (2) while few taxocenes alone were sufficient.

Epidemiology and pathology of Anguillicoloides crassus in European eel Anguilla anguilla from the Tagus estuary (Portugal).

Infection of the European eel Anguilla anguilla by the swimbladder nematode Anguillicoloides crassus was investigated for the first time at 5 sampling sites in the Tagus estuary (Portugal). A total of 332 yellow eels were examined, revealing a prevalence of 56% and a mean intensity of 3.2 lumen worms per swimbladder. The effect of the hosts sex and size on parasitism descriptors was studied. Only total length (TL) was considered a significant determinant, with larger eels harbouring a higher number of nematodes. Eels were parasitized in 4 of the 5 sampling sites, with prevalence values following the salinity gradient along the Tagus estuary. No signs of the nematode were observed in the most saline site. Variations in the intensity of infection were only apparent when a large geographic scale including a wide temperature range was considered. Although 68% of the analysed eels showed pathological damage to the swimbladder caused by the parasite, injuries were relatively reduced in comparison with other studies. No effect of the infection on the condition of the body and on liver condition was detected. However, considerable spleen enlargement was observed with increasing parasite load, which could be related to the bloodsucking activity of this nematode.

Impact of freshwater inputs on the spatial structure of benthic macroinvertebrate communities in two landlocked coastal lagoons

Landlocked lagoons are naturally stressed environments. They are strongly influenced by freshwater input which not only varies naturally, but which is also impacted by anthropogenic activities. This study investigated the direct influence of freshwater discharges on the distribution patterns and abundance of benthic communities in two neighbouring landlocked coastal lagoons, assessing the whole system and the confluence area of each tributary. Sampling occurred in the wet and dry seasons of 2011 at two distances from freshwater discharge locations. Both lagoons were colonized by species from two different pools, freshwater and marine. Freshwater flow rates had a direct influence on the spatial structure of the benthic communities of brackish-water/freshwater interface areas, where also specific taxa can act as early indicators of freshwater input variations. The intensity of this influence is highly dependent on lagoon size, creating spatial heterogeneity or affecting the entire system. The benthic fauna at the confluence of the tributary that depends almost exclusively on groundwater showed the lowest variability, suggesting that the biogeochemical nature of the groundwater may be a central cause for setting specific ecotones. The results suggest that benthic communities of landlocked coastal lagoons can be highly impacted by flow reduction from freshwater aquifers under drought conditions or water abstraction activities.

Mangrove fish of São Tomé Island (Gulf of Guinea): new occurrences and habitat usage

Mangroves are recognised as important nursery and feeding areas for resident and inshore fish species. However, the importance of West African mangroves to the life cycle of fish communities remains poorly studied. The present study is the first record of fish species in tropical insular mangroves for this region and its aim was to assess habitat usage by fish species. Two mangroves of Sao Tome Island (Praia das Conchas and Malanza) were sampled with a multihabitat approach and using different fishing gear to maximise the diversity of fish species collected. Several environmental parameters were also measured. Both mangroves are nursery and opportunistic feeding grounds for fish species, as well as settlement areas for resident species. The highest number of both juveniles and adults (inshore and residents) was observed at the Malanza mangrove, which is also the largest and has the highest habitat heterogeneity. Four new occurrences were reported for the Sao Tome and Principe area, namely Pomadasys jubelini, Bostrychus africanus, Dalophis cephalopeltis and the introduced species Oreochromis mossambicus.

Factors affecting the distribution of fish communities in the river Mondego and main tributaries

Fish assemblage structure and factors affecting the distribution of fish communities were examined for 23 sites in the River Mondego basin during the summer of 1998. The cyprinids Rutilus macrolepidotus, Barbus bocagei, Chondrostoma polylepis, Rutilus alburnoides, Leuciscus corolitertii and Gobio gobio were the most abundant species among the 25 taxa forming the freshwater fish community. Species richness was generally higher in impoundments and in the watershed downstream from the AçudePonte dam, at Coimbra The anadromous species were restricted to the area downstream from the Açude-Ponte, except for a landlocked population of Alosa alosa in the Aguieira reservoir. ln the river stretches less affected by the construction of dams, the two main factors responsible for the structure of fish communities were the altitude and the distance from the source. R. rnacro/epidotus and R. albumoides were dominant closer to the source, at lower altitudes, whereas L corolitertii dominated in upper reaches. As the distance from the source increases and the altitude decreases, the fish communities become dominated by B. bocagei and C. polylepis,larger fishes that take advantage of the increase in river depth.