Jose M. Bellido

A review of cephalopod—environment interactions in European Seas

Cephalopods are highly sensitive to environmental conditions and changes at a range of spatial and temporal scales. Relationships documented between cephalopod stock dynamics and environmental conditions are of two main types: those concerning the geographic distribution of abundance, for which the mechanism is often unknown, and those relating to biological processes such as egg survival, growth, recruitment and migration, where mechanisms are sometimes known and in a very few cases demonstrated by experimental evidence. Cephalopods seem to respond to environmental variation both ‘actively’ (e.g. migrating to areas with more favoured environmental conditions for feeding or spawning) and ‘passively’ (growth and survival vary according to conditions experienced, passive migration with prevailing currents). Environmental effects on early life stages can affect life history characteristics (growth and maturation rates) as well as distribution and abundance. Both large-scale atmospheric and oceanic processes and local environmental variation appear to play important roles in species–environment interactions. While oceanographic conditions are of particular significance for mobile pelagic species such as the ommastrephid squids, the less widely ranging demersal and benthic species may be more dependent on other physical habitat characteristics (e.g. substrate and bathymetry). Coastal species may be impacted by variations in water quality and salinity (related to rainfall and river flow). Gaps in current knowledge and future research priorities are discussed. Key research goals include linking distribution and abundance to environmental effects on biological processes, and using such knowledge to provide environmental indicators and to underpin fishery management.

Fishery discards and bycatch: solutions for an ecosystem approach to fisheries management?

It has been widely acknowledged that fishery discard practices constitute a purposeless waste of valuable living resources, which plays an important role in the depletion of marine populations. Furthermore, discarding may have a number of adverse ecological impacts in marine ecosystems, provoking changes in the overall structure of trophic webs and habitats, which in turn could pose risks for the sustainability of current fisheries. The present review aims to describe the current state-of-the-art in discards research, with particular emphasis on the needs and challenges associated with the implementation of the Ecosystem Approach to Fisheries Management (EAFM) in European waters. We briefly review the international and European policy contexts of discarding, how discard data are collected and incorporated into stock assessments, selectivity in fishing and the main consequences of discarding for ecosystem dynamics. We then review implementation issues related to reducing discards under the EAFM and the associated scientific challenges, and conclude with some comments on lessons learned and future directions.

Modelling intra-annual variation in abundance of squid Loligo forbesi in Scottish waters using generalised additive models

Abstract This paper reports a preliminary application of generalised additive models (GAMs) to describing intra-annual variation in squid abundance in Scottish waters. Models were constructed using data for the years 1983, 1988, 1989 and 1991. Cubic spline smoothers and Gaussian distributions were used to build up the models. Since reliability of local fishery abundance estimates is arguably proportional to fishing (sampling) effort, in addition to standard (unweighted) models, further models incorporating weighting by fishing effort were also fitted. The variables finally included in the GAMs were sea surface temperature (SST) and month. In the weighted models there is no temperature effect on abundance below 13°C whereas the unweighted models show peaks of abundance in the temperature range 8–13°C. Possible reasons for this discrepancy, and advantages and disadvantages of applying GAMs to data from this fishery are described. Further models are suggested including a two-stage procedure to deal the large number of zero observations in the abundance data.

Spatial and temporal patterns of cuttlefish (Sepia officinalis) abundance and environmental influences - a case study using trawl fishery data in French Atlantic coastal, English Channel, and adjacent waters

The spatial and temporal distribution patterns of cuttlefish abundance and the relationships between cuttlefish abundance and environmental variables in the French Atlantic coast, the English Channel, and adjacent waters were studied using both geographical information system and statistical methods. Cuttlefish have a clear general annual migration pattern, consistently occurring in broadly the same areas in different years. The strength of the Atlantic currents into the west part of the English Channel and the south part of the Celtic Sea may be the dominant influence on the timing of cuttlefish migration to these areas. Local abundance shows a positive correlation with SST, although it is difficult to determine if this reflects any causal link. Cuttlefish expand their distribution further north in the spawning season in warm years and shift south in cool years. The centre of high abundance in offshore deep water shifts north in warm winters and south in cool winters.

Identifying essential fish habitat for small pelagic species in Spanish Mediterranean waters

Populations of small pelagic fish support important fisheries in Spanish Mediterranean waters, particularly sardine (Sardina pilchardus) and anchovy (Engraulis encrasicolus), and are distributed along the entire length of the Spanish continental shelf. Using annual acoustic survey data for the years 2003–2005, a GIS-based environmental modelling approach was used to investigate the distribution and abundance of small pelagic fish in relation to environmental variables. Multivariate analysis was applied to provide a preliminary picture of relationships between fish and environmental conditions, followed by application of Generalised Additive Models (GAMs). GAMs showed the presence/absence of fish to be related to bathymetry, sea surface chlorophyll-a concentration and sea surface temperature (SST). The strength and significance of these relationships varied spatially and temporally. High resolution Essential Fish Habitat (EFH) maps were generated for sardine and anchovy, based on the predicted probability of presence of each species. Substantial inter-annual variability in the distribution and quality of EFH was observed, particularly for anchovy. Identification of EFH is of great importance to assess and manage sardine and anchovy resources as it provides a natural link between population dynamics features and geographical scenarios.

Estimation and prediction of the spatial occurrence of fish species using Bayesian latent Gaussian models

A methodological approach for modelling the occurrence patterns of species for the purpose of fisheries management is proposed here. The presence/absence of the species is modelled with a hierarchical Bayesian spatial model using the geographical and environmental characteristics of each fishing location. Maps of predicted probabilities of presence are generated using Bayesian kriging. Bayesian inference on the parameters and prediction of presence/absence in new locations (Bayesian kriging) are made by considering the model as a latent Gaussian model, which allows the use of the integrated nested Laplace approximation (INLA) software (which has been seen to be quite a bit faster than the well-known MCMC methods). In particular, the spatial effect has been implemented with the stochastic partial differential equation (SPDE) approach. The methodology is evaluated on Mediterranean horse mackerel (Trachurus mediterraneus) in the Western Mediterranean. The analysis shows that environmental and geographical factors can play an important role in directing local distribution and variability in the occurrence of species. Although this approach is used to recognize the habitat of mackerel, it could also be for other different species and life stages in order to improve knowledge of fish populations and communities.

The scientific strategy needed to promote a regional ecosystem-based approach to fisheries in the Mediterranean and Black Seas

This manuscript is an outcome of the workshop entitled “Scientific Strategy for a Global Approach to Promote Regional Ecosystem-based Approach to Fisheries (EAF) in the Mediterranean and Black Seas” held in Sète (France) in July 2012. The workshop was organized by Work-Package 6 of the coordination action “Coordinating Research in Support to Application of Ecosystem Approach to Fisheries and Management Advice in the Mediterranean and Black Seas” (CREAM), funded by the EU Seventh Framework Programme. The main aim of the workshop was to discuss what is needed to advance on a robust scientific strategy to promote EAF in the Mediterranean and Black Seas. Participants discussed a series of scientific recommendations for promoting the coordination of initiatives with the aim of contributing to an operational EAF. Discussion was carried out on (i) what can be learnt from case studies that promote EAF worldwide, (ii) how a scientific strategy for EAF can be built, and (iii) which are the future scientific networking activities to promote EAF. Here we summarize the discussions and conclusions of the workshop, and we present the recommendations and future initiatives proposed to advance EAF in the Mediterranean and Black Seas region. Participants to the workshop agreed that the achievement of a common vision regarding the Mediterranean and Black Seas region should be one of the first and most important elements towards a successful EAF. A common vision should recognise the need to promote the reconciliation of conservation and exploitation, and to aim for a good socioeconomic and ecological status. The vision should also promote the recovery of ecosystems and rebuilding of marine commercial stocks and predator species. EAF initiatives, carried out worldwide, illustrated that whilst the development of relevant science is essential to render the EAF process operational, the involvement of stakeholders is the key factor that characterises successful initiatives. This is especially important in the Mediterranean and Black Sea context, where many stakeholders show conflicting interests and associated trade-offs. During the workshop, it became clear that numerous overlapping and poorly coordinated initiatives for EAF exist in the region. The group discussed the integration of the existing initiatives in a coordinated manner and arrived to the conclusion that a scientific network to promote coordinated and operational EAF initiatives created by the scientific community is needed. Ultimately, the discussion was focused on how to build such a scientific network and how to proceed to consolidate the regional scientific vision, with a clear scientific strategy and roadmap, including a diversified toolbox. In the short term, the proposed EAF scientific network should (i) document and coordinate scientific initiatives, (ii) promote the sharing of scientific information and capabilities, (iii) promote data availability, integration, harmonization, and interoperability, (iv) promote training capabilities and capacity building of the scientific community and stakeholders, (v) establish mechanisms to disseminate knowledge, and communicate EAF benefits, and (vi) promote concrete regional scientific initiatives. In the long run, the network should promote scientific advice on EAF to inform adaptive management, and promote EAF implementation at different geographical scales (from local to regional) using a transversal approach. The ultimate goal of the network should be to link management advice to good scientific information providing useful advice to address management objectives (i.e. present the trade-offs), and creating a knowledge-based management approach.

A cephalopod fishery GIS for the Northeast Atlantic: development and application

Cephalopod stocks are of increasing economic importance. Cephalopod fisheries show marked inter-annual fluctuations unrelated to fishery landings and effort. Their population dynamics, particularly recruitment, are thought to be strongly susceptible to changes in environmental conditions. This arises in part from the short life cycle, resulting in poor buffering of the population against changing conditions. These characteristics make traditional approaches to stock assessment and fishery management inappropriate. GIS offers a tool to improve understanding of spatio-temporal trends in abundance and facilitate rational management. A cephalopod fishery geographical information system for Northeast Atlantic waters (CFGIS-NEA) was developed. The system covers the area from 28.0° W to 11.0° E, and 34.5° N to 65.5° N. It was designed for investigating cephalopod resource dynamics in relation to environmental variation. It is based on Unix Arc/Info, and PC ArcView, combined with the statistical software package S-PLUS and supported by a database in Microsoft Access. Environmental data (e.g. sea surface temperature and salinity, sea bottom temperature and salinity, and bathymetric data), cephalopod fishery, survey and biological data, from a variety of sources, were integrated in the GIS as coverages, grids, shapefiles, and tables. Special functions were developed for data integration, data conversion, query, visualisation, analysis and management. User-friendly interfaces were developed allowing relatively inexperienced users to operate the system. The spatial and temporal distribution patterns of cephalopod abundance by species, the spatial and temporal relationships between cephalopod abundance and environmental factors, and the spatial and temporal patterns of cephalopod fishing activity were analysed using a combination of visual (qualitative) and quantitative methods. Predictive empirical models, such as GAMs (generalized additive models), were developed for modelling cephalopod abundance using environmental variables.

Interaction between bottlenose dolphin (Tursiops truncatus) and trammel nets in the Archipelago de La Maddalena, Italy

Interactions between bottlenose dolphins (Tursiops truncatus) and fisheries are an increasing problem in the Mediterranean and effective management measures are needed. In order to assess the impact of dolphin interactions on artisanal trammel nets, we examine 354 fishing operations performed in waters of the Archipelago de La Maddalena (Italy). We evaluate whether interactions were related to the species composition of the catch and, using the local commercial value of the target species, we assess whether there was a real economic loss for fishermen. Bayesian models and partial correspondence analysis were used to determine the extent to which dolphin interactions and habitat differences contributed to variation in the species composition of catches. CPUE for fishing operations with no dolphin interactions was significantly higher than that for operations with dolphin interactions, although clearly this does not confirm a direct causal link, and associated economic loss was estimated to be non-significant. Geographic location, season, depth of seabed, moon phase, and mesh size were all important factors affecting the amount and species composition of the catch. Our results suggest that it is likely that these differences in species composition are due to a mixture of habitat and dolphin-induced effects.

Old Info for a New Fisheries Policy: Discard Ratios and Lengths at Discarding in EU Mediterranean Bottom Trawl Fisheries

Discarding is considered globally among the most important issues for fisheries management. The recent reform of the Common Fisheries Policy establishes a landing obligation for the species which are subject to catch limits and, in the Mediterranean, for species which are subject to Minimum Conservation Reference Size (MCRS) as defined in Annex III to Regulation (EC) No 1967/2006. Additionally, several other initiatives aim to reduce unwanted catches of target and bycatch species, including species of conservation concern. This raises the need to study discarding patterns of (mainly) these species. In this work we collated a considerable amount of historical published information on discard ratios and lengths at discarding for species caught in EU Mediterranean bottom trawl fisheries. The main aim was to summarize the available historical records and make them more accessible for scientific and managerial needs, as well as to try identifying patterns in discarding. We show discard ratios and lengths at which 50% of the individuals were discarded (L50) for 15 species (nine bony fishes, three crustacean decapods and three elasmobranchs). Discard ratios were usually low for target species such as hake, red mullets and highly commercial shrimps and exemptions from the landing obligation under the de minimis rules could be sought in several cases. Discard ratios were usually higher for commercial bycatch species. Discarding is affected by a combination of factors and for a given species, especially for non-target ones, discards are likely to fluctuate within a fishery, across seasons, years and regions. For most species considered, L50s were lower than the MCRS (when in place) and length at first maturity. L50s of target species, such as hake, were very small due to the existence of market demands for small sized individuals. However, for species of low demand, like horse mackerels, a higher retention size was observed, often exceeding MCRS. Lengths at discarding are affected by legal provisions, market demands but also by biological, population and ecological traits. Understanding the factors that affect discarding constitutes the starting point for designing mitigation measures and management plans to reduce discards and improve the sustainability of the stocks.