José M Mogollón

Global rates of marine sulfate reduction and implications for sub–sea-floor metabolic activities

Sulfate reduction is a globally important redox process in marine sediments, yet global rates are poorly quantified. We developed an artificial neural network trained with 199 sulfate profiles, constrained with geomorphological and geochemical maps to estimate global sulfate-reduction rate distributions. Globally, 11.3 teramoles of sulfate are reduced yearly (~15% of previous estimates), accounting for the oxidation of 12 to 29% of the organic carbon flux to the sea floor. Combined with global cell distributions in marine sediments, these results indicate a strong contrast in sub–sea-floor prokaryote habitats: In continental margins, global cell numbers in sulfate-depleted sediment exceed those in the overlying sulfate-bearing sediment by one order of magnitude, whereas in the abyss, most life occurs in oxic and/or sulfate-reducing sediments. Up to 89% of microbial cells in the sub–sea floor at continental margins are sustained by fermentation and methanogenesis Mapping sub–sea-floor communities The sea floor is teeming with microbes, whose sheer numbers produce a major effect on the global biogeochemical cycles of carbon, sulfur, and other important nutrients. Bowles et al. constructed a map showing how deeply sulfates penetrate marine sediments worldwide and how quickly that sulfate is chemically reduced by microbes in the sub–sea-floor. Globally, almost a third of the organic carbon that reaches the sea floor is consumed during sulfate reduction, and the vast majority of microbial cells in the sub–sea-floor at continental margins get their energy through the biochemical processes of fermentation and methanogenesis. Science, this issue p. 889.

Methane gas-phase dynamics in marine sediments: A model study

A one-dimensional reactive transport model including mass, momentum and volume conservation for the solid, aqueous, and gaseous phases is developed to explore the fate of free methane gas in marine sediments. The model assumes steady–state compaction for the solid phase in addition to decoupled gas and aqueous phase transport, instigated by processes such as buoyancy, externally impressed flows and compaction. Chemical species distributions are governed by gas advection, dissolved advection and diffusion as well as by reaction processes, which include organoclastic sulfate reduction, methanogenesis and anaerobic oxidation of methane (AOM). The model is applied to Eckernförde Bay, a shallow-water environment where acoustic profiles confirm a widespread occurrence of year-round biogenic free methane gas within the muddy regions of the sediment, and where subsurface methanogenesis, overlaid by a zone of AOM has been reported. The model results reveal that, under steady-state conditions, upward gas migration is an effective methane transport mechanism from oversaturated to undersaturated intervals of the sediment. Furthermore, sensitivity tests show that when methanogenesis rates increase, the gas flux to the AOM zone becomes progressively more important and may reach values comparable to those of the aqueous methane diffusive flux. Nevertheless, the model also proves that the gas transport rates always remain smaller than the removal rates by combined gaseous methane dissolution and oxidation. Consequently, for the range of environmental conditions investigated here, the AOM zone acts as an efficient subsurface barrier for both aqueous and gaseous methane, preventing methane escape from the sediments to the water column.

Impact of seasonal temperature and pressure changes on methane gas production, dissolution, and transport in unfractured sediments

A one‐dimensional reaction‐transport model is used to investigate the dynamics of methane gas in coastal sediments in response to intra‐annual variations in temperature and pressure. The model is applied to data from two shallow water sites in Eckernforde Bay (Germany) characterized by low and high rates of upward fluid advection. At both sites, organic matter is buried below the sulfate‐reducing zone to the methanogenic zone at sufficiently high rates to allow supersaturation of the pore water with dissolved methane and to form a free methane gas phase. The methane solubility concentration varies by similar magnitudes at both study sites in response to bottom water temperature changes and leads to pronounced peaks in the gas volume fraction in autumn when the methanic zone temperature is at a maximum. Yearly hydrostatic pressure variations have comparatively negligible effects on methane solubility. Field data suggest that no free gas escapes to the water column at any time of the year. Although the existence of gas migration cannot be substantiated by direct observation, a speculative mechanism for slow moving gas is proposed here. The model results reveal that free gas migrating upward into the undersaturated pore water will completely dissolve and subsequently be consumed above the free gas depth (FGD) by anaerobic oxidation of methane (AOM). This microbially mediated process maintains methane undersaturation above the FGD. Although the complexities introduced by seasonal changes in temperature lead to different seasonal trends for the depth‐integrated AOM rates and the FGD, both sites adhere to previously developed prognostic indicators for methane fluxes based on the FGD.

Quantifying manganese and nitrogen cycle coupling in manganese‐rich, organic carbon‐starved marine sediments: Examples from the Clarion‐Clipperton fracture zone

Extensive deep-sea sedimentary areas are characterized by low organic carbon contents and thus harbor suboxic sedimentary environments where secondary (autotrophic) redox cycling becomes important for microbial metabolic processes. Simulation results for three stations in the Eastern Equatorial Pacific with low organic carbon content ( 20 μM) concentrations.

Estimating the free gas content in Baltic Sea sediments using compressional wave velocity from marine seismic data

A 2-D high-resolution velocity field was obtained from marine seismic data to quantify free gas content in shallow muddy sediments at in situ pressure and temperature. The velocities were acquired applying Migration Velocity Analysis on prestack time-migrated data. Compressional wave velocities are highly sensitive to free gas as very small amounts of gas can cause a significant decrease in the medium velocity. The analyzed profile crosses a depression filled with organic-rich Holocene mud in the Bornholm Basin, Baltic Sea. The interval velocity field reveals two low-velocity patches, which extend from the reversed polarity reflections marking the top of the gassy sediment layer down to the base of the Holocene mud. Average interval velocities within the gassy mud are lower than the seafloor migration velocity by up to ∼500 m/s. This decrease, using a geoacoustic model, is caused by an average 0.046% gas volume fraction. The interval velocities in individual cells of the velocity field are reduced to ∼200 m/s predicting up to 3.4% gas content. The velocity field is limited in resolution due to velocity determination at and between reflections; however, together with the stratigraphic interpretation, geological units containing free gas could be identified. Shallow gas occurs vertically throughout most of the Holocene mud in the gassy area. Comparison with biogeochemical studies at other Baltic Sea sites suggests that the distribution of free gas is likely to be patchy in the sediment, but the gas concentration may peak below the sulfate-methane transition zone and gradually decrease below.

Evidence for a palaeo-subglacial lake on the Antarctic continental shelf.

Subglacial lakes are widespread beneath the Antarctic Ice Sheet but their control on ice-sheet dynamics and their ability to harbour life remain poorly characterized. Here we present evidence for a palaeo-subglacial lake on the Antarctic continental shelf. A distinct sediment facies recovered from a bedrock basin in Pine Island Bay indicates deposition within a low-energy lake environment. Diffusive-advection modelling demonstrates that low chloride concentrations in the pore water of the corresponding sediments can only be explained by initial deposition of this facies in a freshwater setting. These observations indicate that an active subglacial meltwater network, similar to that observed beneath the extant ice sheet, was also active during the last glacial period. It also provides a new framework for refining the exploration of these unique environments.

Global diffusive fluxes of methane in marine sediments

Anaerobic oxidation of methane provides a globally important, yet poorly constrained barrier for the vast amounts of methane produced in the subseafloor. Here we provide a global map and budget of the methane flux and degradation in diffusion-controlled marine sediments in relation to the depth of the methane oxidation barrier. Our new budget suggests that 45–61 Tg of methane are oxidized with sulfate annually, with approximately 80% of this oxidation occurring in continental shelf sediments (<200 m water depth). Using anaerobic oxidation as a nearly quantitative sink for methane in steady-state diffusive sediments, we calculate that ~3–4% of the global organic carbon flux to the seafloor is converted to methane. We further report a global imbalance of diffusive methane and sulfate fluxes into the sulfate–methane transition with no clear trend with respect to the corresponding depth of the methane oxidation barrier. The observed global mean net flux ratio between sulfate and methane of 1.4:1 indicates that, on average, the methane flux to the sulfate–methane transition accounts for only ~70% of the sulfate consumption in the sulfate–methane transition zone of marine sediments.Much of the methane produced by the deep subseafloor biosphere is consumed by anaerobic methane oxidation with sulfate in continental shelf sediments, according to a global map and calculated budgets of methane fluxes and degradation.

Exploring spatiotemporal changes of the Yangtze River (Changjiang) nitrogen and phosphorus sources, retention and export to the East China Sea and Yellow Sea

Nitrogen (N) and phosphorus (P) flows from land to sea in the Yangtze River basin were simulated for the period 1900-2010, by combining models for hydrology, nutrient input to surface water, and an in-stream retention. This study reveals that the basin-wide nutrient budget, delivery to surface water, and in-stream retention increased during this period. Since 2004, the Three Gorges Reservoir has contributed 5% and 7% of N and P basin-wide retention, respectively. With the dramatic rise in nutrient delivery, even this additional retention was insufficient to prevent an increase of riverine export from 337 Gg N yr-1 and 58 Gg P yr-1 (N:P molar ratio = 13) to 5896 Gg N yr-1 and 381 Gg P yr-1 (N:P molar ratio = 35) to the East China Sea and Yellow Sea (ECSYS). The midstream and upstream subbasins dominate the N and P exports to the ECSYS, respectively, due to various human activities along the river. Our spatially explicit nutrient source allocation can aid in the strategic targeting of nutrient reduction policies. We posit that these should focus on improving the agricultural fertilizer and manure use efficiency in the upstream and midstream and better urban wastewater management in the downstream subbasin.