José Maria Fernandes

What does an epileptiform spike look like in MEG? Comparison between coincident EEG and MEG spikes.

Recent investigations suggest that there are differences between the characteristics of EEG and MEG epileptiform spikes. The authors performed an objective characterization of the morphology of epileptiform spikes recorded simultaneously in both EEG and MEG to determine whether they present the same morphologic characteristics. Based on a stepwise approach, the authors performed a computer analysis of EEG and MEG of a set of coincident epileptiform transients selected by a senior clinical neurophysiologist in recordings of three patients with drug-resistant epilepsy. A computer-based algorithm was applied to extract parameters that could be used to describe quantitatively the morphology of the transients, followed by a statistical comparison over the extracted metrics of the EEG and MEG waveforms. EEG and MEG coincident events were statistically different with respect to several morphologic characteristics, such as duration, sharpness, and shape. The differences found appear to be a consequence of MEG signals not being influenced by volume propagation through the tissues with different conductivities that surround the brain, compared with EEG, and of the different orientation of the underlying dipolar sources. The results indicate that visual inspection of MEG spikes and automatic spike-detector algorithms should use criteria adapted to the specific characteristics of the MEG, and not simply those used on conventional EEG.

Monkeys time their pauses of movement and not their movement-kinematics during a synchronization-continuation rhythmic task

A critical question in tapping behavior is to understand whether the temporal control is exerted on the duration and trajectory of the downward-upward hand movement or on the pause between hand movements. In the present study, we determined the duration of both the movement execution and pauses of monkeys performing a synchronization-continuation task (SCT), using the speed profile of their tapping behavior. We found a linear increase in the variance of pause-duration as a function of interval, while the variance of the motor implementation was relatively constant across intervals. In fact, 96% of the variability of the duration of a complete tapping cycle (pause + movement) was due to the variability of the pause duration. In addition, we performed a Bayesian model selection to determine the effect of interval duration (450-1,000 ms), serial-order (1-6 produced intervals), task phase (sensory cued or internally driven), and marker modality (auditory or visual) on the duration of the movement-pause and tapping movement. The results showed that the most important parameter used to successfully perform the SCT was the control of the pause duration. We also found that the kinematics of the tapping movements was concordant with a stereotyped ballistic control of the hand pressing the push-button. The present findings support the idea that monkeys used an explicit timing strategy to perform the SCT, where a dedicated timing mechanism controlled the duration of the pauses of movement, while also triggered the execution of fixed movements across each interval of the rhythmic sequence.

Resolving Data Mismatches in End-User Compositions

Many domains such as scientific computing and neuroscience require end users to compose heterogeneous computational entities to automate their professional tasks. However, an issue that frequently hampers such composition is data-mismatches between computational entities. Although, many composition frameworks today provide support for data mismatch resolution through special-purpose data converters, end users still have to put significant effort in dealing with data mismatches, e.g., identifying the available converters and determining which of them meet their QoS expectations. In this paper we present an approach that eliminates this effort by automating the detection and resolution of data mismatches. Specifically, it uses architectural abstractions to automatically detect different types of data mismatches, model-generation techniques to fix those mismatches, and utility theory to decide the best fix based on QoS constraints. We illustrate our approach in the neuroscience domain where data-mismatches can be fixed in an efficient manner on the order of few seconds.

NeuroKinect: A Novel Low-Cost 3Dvideo-EEG System for Epileptic Seizure Motion Quantification

Epilepsy is a common neurological disorder which affects 0.5–1% of the world population. Its diagnosis relies both on Electroencephalogram (EEG) findings and characteristic seizure−induced body movements − called seizure semiology. Thus, synchronous EEG and (2D)video recording systems (known as Video−EEG) are the most accurate tools for epilepsy diagnosis. Despite the establishment of several quantitative methods for EEG analysis, seizure semiology is still analyzed by visual inspection, based on epileptologists’ subjective interpretation of the movements of interest (MOIs) that occur during recorded seizures. In this contribution, we present NeuroKinect, a low-cost, easy to setup and operate solution for a novel 3Dvideo-EEG system. It is based on a RGB-D sensor (Microsoft Kinect camera) and performs 24/7 monitoring of an Epilepsy Monitoring Unit (EMU) bed. It does not require the attachment of any reflectors or sensors to the patient’s body and has a very low maintenance load. To evaluate its performance and usability, we mounted a state-of-the-art 6-camera motion-capture system and our low-cost solution over the same EMU bed. A comparative study of seizure-simulated MOIs showed an average correlation of the resulting 3D motion trajectories of 84.2%. Then, we used our system on the routine of an EMU and collected 9 different seizures where we could perform 3D kinematic analysis of 42 MOIs arising from the temporal (TLE) (n = 19) and extratemporal (ETE) brain regions (n = 23). The obtained results showed that movement displacement and movement extent discriminated both seizure MOI groups with statistically significant levels (mean = 0.15 m vs. 0.44 m, p<0.001; mean = 0.068 m3 vs. 0.14 m3, p<0.05, respectively). Furthermore, TLE MOIs were significantly shorter than ETE (mean = 23 seconds vs 35 seconds, p<0.01) and presented higher jerking levels (mean = 345 ms−3 vs 172 ms−3, p<0.05). Our newly implemented 3D approach is faster by 87.5% in extracting body motion trajectories when compared to a 2D frame by frame tracking procedure. We conclude that this new approach provides a more comfortable (both for patients and clinical professionals), simpler, faster and lower-cost procedure than previous approaches, therefore providing a reliable tool to quantitatively analyze MOI patterns of epileptic seizures in the routine of EMUs around the world. We hope this study encourages other EMUs to adopt similar approaches so that more quantitative information is used to improve epilepsy diagnosis.

Kinect v2 based system for Parkinson's disease assessment.

Human motion analysis can provide valuable information for supporting the clinical assessment of movement disorders, such as Parkinsons disease (PD). In this contribution, we study the suitability of a Kinect v2 based system for supporting PD assessment in a clinical environment, in comparison to the original Kinect (v1). In this study, 3-D body joint data were acquired from both normal subjects, and PD patients treated with deep brain stimulation (DBS). Then, several gait parameters were extracted from the gathered data. The obtained results show that 96% of the considered parameters are appropriate for distinguishing between non-PD subjects, PD patients with DBS stimulator switched on, and PD patients with stimulator switched off (p-value <; 0.001, Kruskal-Wallis test). These results are markedly better than the ones obtained using Kinect v1, where only 73% of the parameters are considered appropriate (p-value <; 0.001).

Upper limb automatisms differ quantitatively in temporal and frontal lobe epilepsies

We quantitatively evaluated the localizing and lateralizing characteristics of ictal upper limb automatisms (ULAs) in patients with temporal lobe epilepsy (TLE; n=38) and frontal lobe epilepsy (FLE; n=20). Movement speed, extent, length, and duration of ULAs were quantitatively analyzed with motion capturing techniques. Upper limb automatisms had a larger extent (p<0.001), covered more distance (p<0.05), and were faster (p<0.001) in FLE than in TLE. In TLE, the maximum speed of ULAs was higher ipsilaterally than contralaterally (173 vs. 84pixels/s; p=0.02), with no significant difference in FLE (511 vs. 428). The duration of ictal automatisms in relation to the total seizure duration was shorter in TLE than in FLE (median 36% vs. 63%; p<0.001), with no difference in the absolute duration (26s vs. 27s). These results demonstrate that quantitative movement analysis of ULAs differentiates FLE from TLE, which may aid in the localization of the epileptogenic zone.

A real time, wearable ECG and continous blood pressure monitoring system for first responders

The study of stress and fatigue among First Responders is a major step in mitigating this public health problem. Blood pressure, heart rate variability and fatigue related arrhythmia are three of the main “windows” to study stress and fatigue. In this paper we present a wearable medical device, capable of acquiring an electrocardiogram and estimating blood pressure in real time, through a pulse wave transit time approach. The system is based on an existent certified wearable medical device called “Vital Jacket” and is aimed to become a tool to allow cardiologists in studying stress and fatigue among first response professionals.

An architectural approach to end user orchestrations

Computations are pervasive across many domains, where end users have to compose various heterogeneous computational entities to perform professional activities. Service-Oriented Architecture (SOA) is a widely used mechanism that can support such forms of compositions as it allows heterogeneous systems to be wrapped as services that can then be combined with each other. However, current SOA orchestration languages require writing scripts that are typically too low-level for end users to write, being targeted at professional programmers and business analysts. To address this problem, this paper proposes a composition approach based on an end user specification style called SCORE. SCORE is an architectural style that uses high-level constructs that can be tailored for different domains and automatically translated into executable constructs by tool support. We demonstrate the use of SCORE in two domains - dynamic network analysis and neuroscience, where users are intelligence analysts and neuroscientists respectively, who use the architectural style based vocabulary in SCORE as a basis of their domain-specific compositions that can be formally analyzed.

ECG delineation and morphological analysis for firefighters tasks differentiation

Between first responder professionals, firefighters registered the highest number of deaths on duty. An abnormal high proportion is associated with cardiovascular events. Our main goal is to identify fatigue/stress during daily routine activities, focusing on the cardiovascular analysis. To accomplish this purpose, ECG wave morphological alterations are analyzed. It was observed that the RR, PP and ST segment significantly differentiate the most stressful tasks from the others.

A novel portable, low-cost kinect-based system for motion analysis in neurological diseases

Many neurological diseases, such as Parkinsons disease and epilepsy, can significantly impair the motor function of the patients, often leading to a dramatic loss of their quality of life. Human motion analysis is regarded as fundamental towards an early diagnosis and enhanced follow-up in this type of diseases. In this contribution, we present NeuroKinect, a novel system designed for motion analysis in neurological diseases. This system includes an RGB-D camera (Microsoft Kinect) and two integrated software applications, KiT (KinecTracker) and KiMA (Kinect Motion Analyzer). The applications enable the preview, acquisition, review and management of data provided by the sensor, which are then used for motion analysis of relevant events. NeuroKinect is a portable, low-cost and markerless solution that is suitable for use in the clinical environment. Furthermore, it is able to provide quantitative support to the clinical assessment of different neurological diseases with movement impairments, as demonstrated by its usage in two different clinical routine scenarios: gait analysis in Parkinsons disease and seizure semiology analysis in epilepsy.