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Dive into the research topics where Joseph E. Subotnik is active.

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Featured researches published by Joseph E. Subotnik.


Journal of Chemical Physics | 2011

A new approach to decoherence and momentum rescaling in the surface hopping algorithm.

Joseph E. Subotnik; Neil Shenvi

As originally proposed, the fewest switches surface hopping (FSSH) algorithm does not allow for decoherence between wavefunction amplitudes on different adiabatic surfaces. In this paper, we propose an inexpensive correction to standard FSSH dynamics wherein we explicitly model the decoherence of nuclear wave packets on distinct electronic surfaces. Our augmented fewest switches surface hopping approach is conceptually simple and, thus far, it has allowed us to capture several key features of the exact quantum results. Two points in particular merit attention. First, we obtain the correct branching ratios when a quantum particle passes through more than one region of nonadiabatic coupling. Second, our formalism provides a new and natural approach for rescaling nuclear momenta after a surface hop. Both of these features should become increasingly important as surface hopping schemes are applied to higher-dimensional problems.


Journal of Chemical Physics | 2008

Constructing diabatic states from adiabatic states: Extending generalized Mulliken–Hush to multiple charge centers with Boys localization

Joseph E. Subotnik; Sina Yeganeh; Robert J. Cave; Mark A. Ratner

This article shows that, although Boys localization is usually applied to single-electron orbitals, the Boys method itself can be applied to many electron molecular states. For the two-state charge-transfer problem, we show analytically that Boys localization yields the same charge-localized diabatic states as those found by generalized Mulliken-Hush theory. We suggest that for future work in electron transfer, where systems have more than two charge centers, one may benefit by using a variant of Boys localization to construct diabatic potential energy surfaces and extract electronic coupling matrix elements. We discuss two chemical examples of Boys localization and propose a generalization of the Boys algorithm for creating diabatic states with localized spin density that should be useful for Dexter triplet-triplet energy transfer.


Journal of Chemical Physics | 2006

Linear scaling density fitting

Alex Sodt; Joseph E. Subotnik; Martin Head-Gordon

Two modifications of the resolution of the identity (RI)/density fitting (DF) approximations are presented. First, we apply linear scaling and J-engine techniques to speed up traditional DF. Second, we develop an algorithm that produces local, accurate fits with effort that scales linearly with system size. The fits produced are continuous, differentiable, well-defined, and do not require preset fitting domains. This metric-independent technique for producing a priori local fits is shown to be accurate and robust even for large systems. Timings are presented for linear scaling RI/DF calculations on large one-, two-, and three-dimensional carbon systems.


Journal of Chemical Physics | 2006

A near linear-scaling smooth local coupled cluster algorithm for electronic structure

Joseph E. Subotnik; Alex Sodt; Martin Head-Gordon

We demonstrate near linear scaling of a new algorithm for computing smooth local coupled-cluster singles-doubles (LCCSD) correlation energies of quantum mechanical systems. The theory behind our approach has been described previously, [J. Subotnik and M. Head-Gordon, J. Chem. Phys. 123, 064108 (2005)], and requires appropriately multiplying standard iterative amplitude equations by a bump function, creating local amplitude equations (which are smooth according to the implicit function theorem). Here, we provide an example that this theory works in practice: we show that our algorithm leads to smooth potential energy surfaces and yields large computational savings. As an example, we apply our LCCSD approach to measure the post-MP2 correction to the energetic gap between two different alanine tetrapeptide conformations.


Journal of Chemical Physics | 2009

The initial and final states of electron and energy transfer processes: diabatization as motivated by system-solvent interactions.

Joseph E. Subotnik; Robert J. Cave; Ryan P. Steele; Neil Shenvi

For a system which undergoes electron or energy transfer in a polar solvent, we define the diabatic states to be the initial and final states of the system, before and after the nonequilibrium transfer process. We consider two models for the system-solvent interactions: A solvent which is linearly polarized in space and a solvent which responds linearly to the system. From these models, we derive two new schemes for obtaining diabatic states from ab initio calculations of the isolated system in the absence of solvent. These algorithms resemble standard approaches for orbital localization, namely, the Boys and Edmiston-Ruedenberg (ER) formalisms. We show that Boys localization is appropriate for describing electron transfer [Subotnik et al., J. Chem. Phys. 129, 244101 (2008)] while ER describes both electron and energy transfer. Neither the Boys nor the ER methods require definitions of donor or acceptor fragments and both are computationally inexpensive. We investigate one chemical example, the case of oligomethylphenyl-3, and we provide attachment/detachment plots whereby the ER diabatic states are seen to have localized electron-hole pairs.


Journal of Chemical Physics | 2005

A local correlation model that yields intrinsically smooth potential-energy surfaces.

Joseph E. Subotnik; Martin Head-Gordon

We demonstrate an algorithm for computing local coupled-cluster doubles (LCCD) energies that form rigorously smooth potential-energy surfaces and which should be fast enough for application to large systems in the future. Like previous LCCD algorithms, our method solves iteratively for only a limited number of correlation amplitudes, treating the remaining amplitudes with second-order perturbation theory. However, by employing bump functions, our method smoothes the transition from iteratively solved amplitude to perturbation-treated amplitude, invoking the implicit function theorem to prove that our LCCD energy is an infinitely differentiable function of nuclear coordinates. We make no explicit amplitude domains nor do we rely on the existence of atom-centered, redundant orbitals in order to get smooth potential-energy curves. In fact, our algorithm employs only localized orthonormal occupied and virtual orbitals. Our approach should be applicable to many other electron correlation methods.


Journal of Chemical Physics | 2011

Simultaneous-trajectory surface hopping: A parameter-free algorithm for implementing decoherence in nonadiabatic dynamics

Neil Shenvi; Joseph E. Subotnik; Weitao Yang

In this paper, we introduce a trajectory-based nonadiabatic dynamics algorithm which aims to correct the well-known overcoherence problem in Tullys popular fewest-switches surface hopping algorithm. Our simultaneous-trajectory surface hopping algorithm propagates a separate classical trajectory on each energetically accessible adiabatic surface. The divergence of these trajectories generates decoherence, which collapses the particle wavefunction onto a single adiabatic state. Decoherence is implemented without the need for any parameters, either empirical or adjustable. We apply our algorithm to several model problems and find a significant improvement over the traditional algorithm.


Journal of Chemical Physics | 2011

Communication: Standard surface hopping predicts incorrect scaling for Marcus’ golden-rule rate: The decoherence problem cannot be ignored

Brian R. Landry; Joseph E. Subotnik

We evaluate the accuracy of Tullys surface hopping algorithm for the spin-boson model for the case of a small diabatic coupling parameter (V). We calculate the transition rates between diabatic surfaces, and we compare our results to the expected Marcus rates. We show that standard surface hopping yields an incorrect scaling with diabatic coupling (linear in V), which we demonstrate is due to an incorrect treatment of decoherence. By modifying standard surface hopping to include decoherence events, we recover the correct scaling (~V(2)).


Journal of Chemical Physics | 2012

How to recover Marcus theory with fewest switches surface hopping: Add just a touch of decoherence

Brian R. Landry; Joseph E. Subotnik

We present a slightly improved version of our augmented fewest switches surface hopping (A-FSSH) algorithm and apply it to the calculation of transition rates between diabatic electronic states within the spin-boson model. We compare A-FSSH rates with (i) Marcus rates from the golden rule, (ii) Tully-style FSSH rates, and (iii) FSSH rates using a simple, intuitive decoherence criterion. We show that unlike FSSH, A-FSSH recovers the correct scaling with diabatic coupling (quadratic in V) as well as the lack of dependence on harmonic frequency ω for small enough values of ω and large enough temperatures.


Journal of Chemical Physics | 2005

Fast localized orthonormal virtual orbitals which depend smoothly on nuclear coordinates

Joseph E. Subotnik; Anthony D. Dutoi; Martin Head-Gordon

We present here an algorithm for computing stable, well-defined localized orthonormal virtual orbitals which depend smoothly on nuclear coordinates. The algorithm is very fast, limited only by diagonalization of two matrices with dimension the size of the number of virtual orbitals. Furthermore, we require no more than quadratic (in the number of electrons) storage. The basic premise behind our algorithm is that one can decompose any given atomic-orbital (AO) vector space as a minimal basis space (which includes the occupied and valence virtual spaces) and a hard-virtual (HV) space (which includes everything else). The valence virtual space localizes easily with standard methods, while the hard-virtual space is constructed to be atom centered and automatically local. The orbitals presented here may be computed almost as quickly as projecting the AO basis onto the virtual space and are almost as local (according to orbital variance), while our orbitals are orthonormal (rather than redundant and nonorthogonal). We expect this algorithm to find use in local-correlation methods.

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Wenjie Dou

University of Pennsylvania

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Ethan Alguire

University of Pennsylvania

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Abraham Nitzan

University of Pennsylvania

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Brian R. Landry

University of Pennsylvania

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Qi Ou

University of Pennsylvania

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Amber Jain

University of Wisconsin-Madison

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Shervin Fatehi

University of Pennsylvania

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Wenjun Ouyang

University of Pennsylvania

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Alex Sodt

Lawrence Berkeley National Laboratory

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