Network


Latest external collaboration on country level. Dive into details by clicking on the dots.

Hotspot


Dive into the research topics where Joseph Hughes is active.

Publication


Featured researches published by Joseph Hughes.


Evolution | 2004

ECOMORPHOLOGICAL ADAPTATION OF ACORN WEEVILS TO THEIR OVIPOSITION SITE

Joseph Hughes; Alfried P. Vogler

Abstract Comparisons between closely related species in different habitats provide a window into understanding how biotic factors shape evolutionary pathways. Weevils in the genus Curculio have radiated extensively across the Palearctic, where similar ecomorphs have evolved independently on different hosts. We examined ecological and morphological data for 31 Curculio species using multivariate statistics to determine which morphological traits covary and which correlate with the host seed size. A subset of 15 taxa for which phylogenetic relationships were known were used for comparative analyses and inferring historical patterns of trait evolution. The morphological analyses suggest rostrum size increased proportionately to body size in both males and females and that both rostrum and body size correlate with host seed size but that rostrum shape does not correlate with any of the seed traits used in the analyses. Host shifts from small seeds to considerably larger seeds or vice versa have occurred several times independently and historical trait evolution indicates that these host shifts were accompanied by morphological changes in rostrum size. These patterns suggest that seed size is an important selective agent for changes in rostrum length along with body size and thus may be a key factor promoting morphological differentiation in the genus Curculio.


Archive | 2016

Introduction: studying diversity in an era of ubiquitous genomics

James A. Cotton; Peter D. Olson; Joseph Hughes

Just as scientific discoveries enable the development of new technology, novel technologies can drive scientific progress. Similar to the adoption of PCR as a mainstream laboratory technique in the 1990s, the ability to readily sequence whole genomes today has opened up new areas of biology and fundamentally changed the way people work in existing fields. The most obvious feature of so-called ‘next generation’ sequencing (NGS) technologies (a misnomer that includes a wide array of platforms developed over the past decade) is the enormous increase in throughput of sequence data, resulting in an unprecedented reduction in cost. A single sequencing ‘run’ of a high-end platform can generate up to 5 billion reads and determine the sequence of 1500 billion bp of DNA – the equivalent of 500 human genomes – in 3 to 4 days. The US National Human Genome Research Institute has tracked the changing price of DNA sequencing they fund from about


Molecular Biology and Evolution | 2006

Dense Taxonomic EST Sampling and Its Applications for Molecular Systematics of the Coleoptera (Beetles)

Joseph Hughes; Stuart J. Longhorn; Anna Papadopoulou; Kosmas Theodorides; Alessandra de Riva; Monica Mejia-Chang; Peter G. Foster; Alfried P. Vogler

5000 per Mb to 5 cents per Mb over the last 15 years: a 100 000-fold drop (see Fig 1). At the time of writing (2015) the sequencing equipment market is dominated by Illumina, and a relative lack of competition and the maturity of the current technology has at least temporarily slowed the fall in price. However, the development of newer sequencing platforms is expected to soon spark another era of rapidly declining prices and rising throughput. This enormous technological progress has been a boon for many areas of biology, but the change in technology has also required researchers to change the


Molecular Phylogenetics and Evolution | 2004

The phylogeny of acorn weevils (genus Curculio) from mitochondrial and nuclear DNA sequences: the problem of incomplete data.

Joseph Hughes; Alfried P. Vogler


Insect Biochemistry and Molecular Biology | 2006

Gene expression in the gut of keratin-feeding clothes moths (Tineola) and keratin beetles (Trox) revealed by subtracted cDNA libraries.

Joseph Hughes; Alfried P. Vogler


Archive | 2016

An NGS approach to archaeobotanical museum specimens as genetic resources in systematics research

Oliver Smith; Sarah A. Palmer; Rafal Gutaker; Robin G. Allaby; Peter D. Olson; Joseph Hughes; James A. Cotton


Archive | 2016

Utilizing next generation sequencing for evo-devo study of plant traits

Rachel Walker; Paula J. Rudall; Beverley J. Glover; Peter D. Olson; Joseph Hughes; James A. Cotton


Archive | 2016

Perspective: Biodiversity and the (data) beast

Holly M. Bik; W. Kelley Thomas; Peter D. Olson; Joseph Hughes; James A. Cotton


Archive | 2016

Perspective: Challenges in assembling the ‘next generation’ Tree of Life

Michael J. Sanderson; Peter D. Olson; Joseph Hughes; James A. Cotton


Archive | 2016

Protist systematics, ecology and next generation sequencing

David Bass; Thomas Bell; Peter D. Olson; Joseph Hughes; James A. Cotton

Collaboration


Dive into the Joseph Hughes's collaboration.

Top Co-Authors

Avatar
Top Co-Authors

Avatar

James A. Cotton

Wellcome Trust Sanger Institute

View shared research outputs
Top Co-Authors

Avatar
Top Co-Authors

Avatar
Top Co-Authors

Avatar

Stuart J. Longhorn

American Museum of Natural History

View shared research outputs
Top Co-Authors

Avatar
Top Co-Authors

Avatar

David Bass

Centre for Environment

View shared research outputs
Top Co-Authors

Avatar

Josephine M. Bryant

Wellcome Trust Sanger Institute

View shared research outputs
Top Co-Authors

Avatar
Top Co-Authors

Avatar
Researchain Logo
Decentralizing Knowledge