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Dive into the research topics where Joseph J. Fontaine is active.

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Featured researches published by Joseph J. Fontaine.


The American Naturalist | 2006

Habitat Selection Responses of Parents to Offspring Predation Risk: An Experimental Test

Joseph J. Fontaine; Thomas E. Martin

The ability of nest predation to influence habitat settlement decisions in birds is widely debated, despite its importance in limiting fitness. Here, we experimentally manipulated nest predation risk across a landscape and asked the question, do migratory birds assess and respond to variation in nest predation risk when choosing breeding habitats? We examined habitat preference by quantifying the density and settlement date of eight species of migratory passerines breeding in areas with and without intact nest predator communities. We found consistently more individuals nesting in areas with reduced nest predation than in areas with intact predator assemblages, although predation risk had no influence on settlement or breeding phenology. Additionally, those individuals occupying safer nesting habitats exhibited increased singing activity. These findings support a causal relationship between habitat choice and nest predation risk and suggest the importance of nest predation risk in shaping avian community structure and breeding activity.


Evolution | 2006

LIFE-HISTORY AND ECOLOGICAL CORRELATES OF GEOGRAPHIC VARIATION IN EGG AND CLUTCH MASS AMONG PASSERINE SPECIES

Thomas E. Martin; Ronald D. Bassar; S.K. Bassar; Joseph J. Fontaine; Penn Lloyd; Heather A. Mathewson; Alina M. Niklison; Anna D. Chalfoun

Abstract Broad geographic patterns in egg and clutch mass are poorly described, and potential causes of variation remain largely unexamined. We describe interspecific variation in avian egg and clutch mass within and among diverse geographic regions and explore hypotheses related to allometry, clutch size, nest predation, adult mortality, and parental care as correlates and possible explanations of variation. We studied 74 species of Passeriformes at four latitudes on three continents: the north temperate United States, tropical Venezuela, subtropical Argentina, and south temperate South Africa. Egg and clutch mass increased with adult body mass in all locations, but differed among locations for the same body mass, demonstrating that egg and clutch mass have evolved to some extent independent of body mass among regions. A major portion of egg mass variation was explained by an inverse relationship with clutch size within and among regions, as predicted by life‐history theory. However, clutch size did not explain all geographic differences in egg mass; eggs were smallest in South Africa despite small clutch sizes. These small eggs might be explained by high nest predation rates in South Africa; life‐history theory predicts reduced reproductive effort under high risk of offspring mortality. This prediction was supported for clutch mass, which was inversely related to nest predation but not for egg mass. Nevertheless, clutch mass variation was not fully explained by nest predation, possibly reflecting interacting effects of adult mortality. Tests of the possible effects of nest predation on egg mass were compromised by limited power and by counterposing direct and indirect effects. Finally, components of parental investment, defined as effort per offspring, might be expected to positively coevolve. Indeed, egg mass, but not clutch mass, was greater in species that shared incubation by males and females compared with species in which only females incubate eggs. However, egg and clutch mass were not related to effort of parental care as measured by incubation attentiveness. Ecological and life‐history correlates of egg and clutch mass variation found here follow from theory, but possible evolutionary causes deserve further study.


The Condor | 2007

Breeding Biology of Passerines in a Subtropical Montane Forest in Northwestern Argentina

Sonya K. Auer; Ronald D. Bassar; Joseph J. Fontaine; Thomas E. Martin

Abstract The breeding ecology of south temperate bird species is less widely known than that of north temperate species, yet because they comprise a large portion of the worlds avian diversity, knowledge of their breeding ecology can contribute to a more comprehensive understanding of the geographic diversity of avian reproductive traits and life history strategies. We provide the first detailed examination of the reproductive strategies of 18 forest passerines of subtropical, northwestern Argentina. Mean clutch sizes were smaller and egg mass was greater than for north temperate birds, but differed among species and nest types, with cavity-nesters having larger clutches than species with open-cup and enclosed nests. Across all species, the average breeding season duration was 50 days; thus, the common perception that southern species have smaller clutch sizes because of longer breeding seasons is not supported in this community. Daily nest predation rates were influenced by nest type, cavity nests suffering the least from predation, as found in north temperate systems. Only females incubated eggs in all but one species, whereas both parents fed and cared for nestlings in all species. Mean nest attentiveness was low compared to north temperate passerines. Mean hourly nestling feeding rates differed among species and were negatively related to nest predation risk. In short, coexisting species in this subtropical forest varied in their life history strategies, in part correlated with variation in nest predation risk, but also differing from north temperate species.


Journal of Animal Ecology | 2009

Flower power: tree flowering phenology as a settlement cue for migrating birds

Laura J. McGrath; Charles van Riper; Joseph J. Fontaine

1. Neotropical migrant birds show a clear preference for stopover habitats with ample food supplies; yet, the proximate cues underlying these decisions remain unclear. 2. For insectivorous migrants, cues associated with vegetative phenology (e.g. flowering, leaf flush, and leaf loss) may reliably predict the availability of herbivorous arthropods. Here we examined whether migrants use the phenology of five tree species to choose stopover locations, and whether phenology accurately predicts food availability. 3. Using a combination of experimental and observational evidence, we show migrant populations closely track tree phenology, particularly the flowering phenology of honey mesquite (Prosopis glandulosa), and preferentially forage in trees with more flowers. Furthermore, the flowering phenology of honey mesquite reliably predicts overall arthropod abundance as well as the arthropods preferred by migrants for food. 4. Together, these results suggest that honey mesquite flowering phenology is an important cue used by migrants to assess food availability quickly and reliably, while in transit during spring migration.


Evolutionary Ecology | 2012

Nest predation, food, and female age explain seasonal declines in clutch size

Karie L. Decker; Courtney J. Conway; Joseph J. Fontaine

The selection pressures responsible for intra- and interspecific variation in avian clutch size have been debated for over half a century. Seasonal declines in clutch size represent one of the most robust patterns in avian systems, yet despite extensive research on the subject, the mechanisms underlying this pattern remain largely unknown. We tested a combination of experimental and observational predictions to evaluate ten hypotheses, representing both evolutionary and proximate mechanisms proposed to explain seasonal declines in avian clutch size. In line with long held life-history theory, we found strong support for both an evolved and proximate response to food availability for young. We also found evidence consistent with predictions that proximate level experiential nest predation influences seasonal declines in clutch size. Finally, older females appear to invest more in reproduction (initiate nests earlier and lay larger clutches) and choose better territories than younger females. Our results highlight the importance of examining multiple hypotheses in a theoretical context to elucidate the ecological processes underlying commonly observed patterns in life history.


PLOS ONE | 2014

Assessing Landscape Constraints on Species Abundance: Does the Neighborhood Limit Species Response to Local Habitat Conservation Programs?

Christopher F. Jorgensen; Larkin A. Powell; Jeffery J. Lusk; Andrew A. Bishop; Joseph J. Fontaine

Landscapes in agricultural systems continue to undergo significant change, and the loss of biodiversity is an ever-increasing threat. Although habitat restoration is beneficial, management actions do not always result in the desired outcome. Managers must understand why management actions fail; yet, past studies have focused on assessing habitat attributes at a single spatial scale, and often fail to consider the importance of ecological mechanisms that act across spatial scales. We located survey sites across southern Nebraska, USA and conducted point counts to estimate Ring-necked Pheasant abundance, an economically important species to the region, while simultaneously quantifying landscape effects using a geographic information system. To identify suitable areas for allocating limited management resources, we assessed land cover relationships to our counts using a Bayesian binomial-Poisson hierarchical model to construct predictive Species Distribution Models of relative abundance. Our results indicated that landscape scale land cover variables severely constrained or, alternatively, facilitated the positive effects of local land management for Ring-necked Pheasants.


PLOS ONE | 2017

Translating statistical species-habitat models to interactive decision support tools

Lyndsie S. Wszola; Victoria L. Simonsen; Erica F. Stuber; Caitlyn R. Gillespie; Lindsey N. Messinger; Karie L. Decker; Jeffrey J. Lusk; Christopher F. Jorgensen; Andrew A. Bishop; Joseph J. Fontaine

Understanding species-habitat relationships is vital to successful conservation, but the tools used to communicate species-habitat relationships are often poorly suited to the information needs of conservation practitioners. Here we present a novel method for translating a statistical species-habitat model, a regression analysis relating ring-necked pheasant abundance to landcover, into an interactive online tool. The Pheasant Habitat Simulator combines the analytical power of the R programming environment with the user-friendly Shiny web interface to create an online platform in which wildlife professionals can explore the effects of variation in local landcover on relative pheasant habitat suitability within spatial scales relevant to individual wildlife managers. Our tool allows users to virtually manipulate the landcover composition of a simulated space to explore how changes in landcover may affect pheasant relative habitat suitability, and guides users through the economic tradeoffs of landscape changes. We offer suggestions for development of similar interactive applications and demonstrate their potential as innovative science delivery tools for diverse professional and public audiences.


Landscape Ecology | 2017

A Bayesian method for assessing multi-scale species-habitat relationships

Erica F. Stuber; Lutz F. Gruber; Joseph J. Fontaine

ContextScientists face several theoretical and methodological challenges in appropriately describing fundamental wildlife-habitat relationships in models. The spatial scales of habitat relationships are often unknown, and are expected to follow a multi-scale hierarchy. Typical frequentist or information theoretic approaches often suffer under collinearity in multi-scale studies, fail to converge when models are complex or represent an intractable computational burden when candidate model sets are large.ObjectivesOur objective was to implement an automated, Bayesian method for inference on the spatial scales of habitat variables that best predict animal abundance.MethodsWe introduce Bayesian latent indicator scale selection (BLISS), a Bayesian method to select spatial scales of predictors using latent scale indicator variables that are estimated with reversible-jump Markov chain Monte Carlo sampling. BLISS does not suffer from collinearity, and substantially reduces computation time of studies. We present a simulation study to validate our method and apply our method to a case-study of land cover predictors for ring-necked pheasant (Phasianus colchicus) abundance in Nebraska, USA.ResultsOur method returns accurate descriptions of the explanatory power of multiple spatial scales, and unbiased and precise parameter estimates under commonly encountered data limitations including spatial scale autocorrelation, effect size, and sample size. BLISS outperforms commonly used model selection methods including stepwise and AIC, and reduces runtime by 90%.ConclusionsGiven the pervasiveness of scale-dependency in ecology, and the implications of mismatches between the scales of analyses and ecological processes, identifying the spatial scales over which species are integrating habitat information is an important step in understanding species-habitat relationships. BLISS is a widely applicable method for identifying important spatial scales, propagating scale uncertainty, and testing hypotheses of scaling relationships.


Natural Areas Journal | 2013

Great gray owls (Strix nebulosa) in Yosemite National Park: on the importance of food, forest structure, and human disturbance.

Charles van Riper; Joseph J. Fontaine; Jan W. van Wagtendonk

ABSTRACT: We studied great gray owls (Strix nebulosa Forster) in Yosemite National Park, California, measuring variables that could potentially influence patterns of occurrence and conservation of this stateendangered species. We found that owl presence was closely tied to habitat (red fir (Abies magnified A. Murray) and the abundance of meadows), prey, and snags across the landscape. We also found that indicators of human recreational activities negatively influenced owl distribution and habitat use. Great gray owls appear to prefer mid-elevation red fir forest with meadows that are drier and more productive in terms of small mammal populations. That these areas also have the highest human activity presents a paradox, both for individual owls and for the future conservation and management of this California endangered species. The extent to which human recreation in natural areas affects animal behavior, species distribution, and productivity is a growing issue in natural area management. We present information that will allow land managers to better understand how existing natural resources, coupled with human recreation, influence the distribution and habitat use of the great gray owl.


The Wilson Journal of Ornithology | 2009

Seasonal Patterns of Song Structure Variation in a Suboscine Passerine

Bruce A. Robertson; Joseph J. Fontaine; Elizabeth R. Loomis

Abstract Studies of song and its function in suboscine passerines are rare. We examined spatial and temporal variation in song structure in a wild population of Olive-sided Flycatchers (Contopus cooperi) and tested among hypotheses explaining this variation. Repeatable variation in song type was observed both within and among individuals. More than 10% of territorial males expressed atypical song types, i.e., permutations of sequential missing and repeated elements of the typical adult song. Atypical songs were predominantly expressed by unpaired males independent of habitat type. A small fraction of males sang atypical song through the middle of the breeding season, but all males sang only stereotypical adult song by the end of the season. These results suggest the expression of atypical songs reflect protracted vocal development rather than evolution of new song types, geographic variation in song structure, or an extensive song repertoire in Olive-sided Flycatchers.

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Caitlyn R. Gillespie

University of Nebraska–Lincoln

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Christopher F. Jorgensen

University of Nebraska–Lincoln

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Kevin L. Pope

University of Nebraska–Lincoln

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Ryan J. Stutzman

University of Nebraska–Lincoln

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Ahjond S. Garmestani

United States Environmental Protection Agency

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