Joseph P. Zinter
Yale University
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Featured researches published by Joseph P. Zinter.
Optics Express | 2011
Joseph P. Zinter; Michael J. Levene
Understanding fluorescence propagation through a multiphoton microscope is of critical importance in designing high performance systems capable of deep tissue imaging. Optical models of a scattering tissue sample and the Olympus 20X 0.95NA microscope objective were used to simulate fluorescence propagation as a function of imaging depth for physiologically relevant scattering parameters. The spatio-angular distribution of fluorescence at the objective back aperture derived from these simulations was used to design a simple, maximally efficient post-objective fluorescence collection system. Monte Carlo simulations corroborated by data from experimental tissue phantoms demonstrate collection efficiency improvements of 50% – 90% over conventional, non-optimized fluorescence collection geometries at large imaging depths. Imaging performance was verified by imaging layer V neurons in mouse cortex to a depth of 850 μm.
Journal of Biomedical Optics | 2010
Sonia Parra; Thomas H. Chia; Joseph P. Zinter; Michael J. Levene
Typical imaging depths with multiphoton microscopy (MPM) are limited to less than 300 mum in many tissues due to light scattering. Optical clearing significantly reduces light scattering by replacing water in the organ tissue with a fluid having a similar index of refraction to that of proteins. We demonstrate MPM of intact, fixed, cleared mouse organs with penetration depths and fields of view in excess of 2 mm. MPM enables the creation of large 3-D data sets with flexibility in pixel format and ready access to intrinsic fluorescence and second-harmonic generation. We present high-resolution images and 3-D image stacks of the brain, small intestine, large intestine, kidney, lung, and testicle with image sizes as large as 4,096 x 4,096 pixels.
Proceedings of the National Academy of Sciences of the United States of America | 2015
Rui Ni; Mark H. Michalski; Elliott Brown; Ngoc Doan; Joseph P. Zinter; Nicholas T. Ouellette; Gordon M. Shepherd
Significance We have analyzed adaptations of the human airway to enhance transport of food volatiles underlying retronasal smell during expiration as well as limit transport in the opposite orthonasal direction toward the lung during inspiration. We show experimentally using an anatomically based flow dynamic model that the structure of the human airway at the back of the mouth enhances the entrainment of volatiles during expiration and minimizes it during inspiration. Unexpectedly, this effect is largest in a small range of flow rates, which coincides with quiet breathing. Our findings provide insight into the retronasal olfaction process and the adaptation of the shape of the human airway. The ability of humans to distinguish the delicate differences in food flavors depends mostly on retronasal smell, in which food volatiles entrained into the airway at the back of the oral cavity are transported by exhaled air through the nasal cavity to stimulate the olfactory receptor neurons. Little is known whether food volatiles are preferentially carried by retronasal flow toward the nasal cavity rather than by orthonasal flow into the lung. To study the differences between retronasal and orthonasal flow, we obtained computed tomography (CT) images of the orthonasal airway from a healthy human subject, printed an experimental model using a 3D printer, and analyzed the flow field inside the airway. The results show that, during inhalation, the anatomical structure of the oropharynx creates an air curtain outside a virtual cavity connecting the oropharynx and the back of the mouth, which prevents food volatiles from being transported into the main stream toward the lung. In contrast, during exhalation, the flow preferentially sweeps through this virtual cavity and effectively enhances the entrainment of food volatiles into the main retronasal flow. This asymmetrical transport efficiency is also found to have a nonmonotonic Reynolds number dependence: The asymmetry peaks at a range of an intermediate Reynolds number close to 800, because the air curtain effect during inhalation becomes strongest in this range. This study provides the first experimental evidence, to our knowledge, for adaptations of the geometry of the human oropharynx for efficient transport of food volatiles toward the olfactory receptors in the nasal cavity.
international conference of the ieee engineering in medicine and biology society | 2014
Raja R. Narayan; Natalie Pancer; Brian Loeb; Kristi Oki; Andrew Crouch; Spencer B. Backus; Yusuf Chauhan; Roger Patron-Lozano; Manuel I. Rodriguez-Davalos; John P. Geibel; Richard E. Fan; Joseph P. Zinter
In the past two decades, much advancement has been made in the area of organ procurement and preservation for the transplant of kidneys, livers, and lungs. However, small intestine preservation remains unchanged. We propose a new preservation system for intestinal grafts that has the potential to increase the viability of the organ during transport. When experimented with porcine intestine, our device resulted in superior tissue quality than tissue in standard of care.
IEEE Transactions on Biomedical Engineering | 2008
Joseph P. Zinter; Michael J. Levene
Efficient fluorescence collection is critically important when maximizing imaging depth in multiphoton microscopy. Here we present an optimized, large-aperture fluorescence collection system for use with Hamamatsu GaAsP photomultiplier tubes.
Proceedings of SPIE | 2007
Thomas H. Chia; Joseph P. Zinter; Dennis D. Spencer; Anne Williamson; Michael J. Levene
A powerful advantage of multiphoton microscopy is its ability to image endogenous fluorophores such as the ubiquitous coenzyme NADH in discrete cellular populations. NADH is integral in both oxidative and non-oxidative cellular metabolism. NADH loses fluorescence upon oxidation to NAD+; thus changes in NADH fluorescence can be used to monitor metabolism. Recent studies have suggested that hypo metabolic astrocytes play an important role in cases of temporal lobe epilepsy (TLE). Current theories suggest this may be due to defective and/or a reduced number of mitochondria or dysfunction of the neuronal-astrocytic metabolic coupling. Measuring NADH fluorescence changes following chemical stimulation enables the quantification of the cellular distribution of metabolic anomalies in epileptic brain tissue compared to healthy tissue. We present what we believe to be the first multiphoton microscopy images of NADH from the human brain. We also present images of NADH fluorescence from the hippocampus of the kainate-treated rat TLE model. In some experiments, human and rat astrocytes were selectively labeled with the fluorescent dye sulforhodamine 101 (SR101). Our results demonstrate that multiphoton microscopy is a powerful tool for assaying the metabolic pathologies associated with temporal lobe epilepsy in humans and in rodent models.
Journal of Gastrointestinal Surgery | 2016
Armando Salim Munoz-Abraham; Roger Patron-Lozano; Raja R. Narayan; Sami S. Judeeba; Abedalrazaq Alkukhun; Tariq I. Alfadda; Joseph T. Belter; David C. Mulligan; Raffaella A. Morotti; Joseph P. Zinter; John P. Geibel; Manuel I. Rodriguez-Davalos
Archive | 2016
John P. Geibel; Joseph P. Zinter; Manuel I. Rodriguez-Davalos; Roger Patron-Lozano; Spencer B. Backus; Andrew Crouch; Brian Loeb; Raja R. Narayan; Kristi Oki; Natalie Pancer
Gastroenterology | 2015
Armando Salim Munoz-Abraham; Roger Patron-Lozano; Tariq I. Alfadda; Sami S. Judeeba; Abedalrazaq Alkukhun; Raja R. Narayan; Yusuf Chauhan; Joseph T. Belter; Raffaella A. Morotti; Joseph P. Zinter; Manuel I. Rodriguez-Davalos; John P. Geibel
Gastroenterology | 2014
Raja R. Narayan; Roger Patron-Lozano; Brian Loeb; Kristi Oki; Natalie Pancer; Andrew Crouch; Yusuf Chauhan; Spencer B. Backus; Richard E. Fan; Joseph P. Zinter; David C. Mulligan; Sukru Emre; John P. Geibel; Manuel I. Rodriguez-Davalos