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Featured researches published by Jun Ashida.


Journal of Biomolecular NMR | 2003

Determination of the torsion angles of alanine and glycine residues of model compounds of spider silk (AGG)(10) using solid-state NMR methods.

Jun Ashida; Kosuke Ohgo; Kohei Komatsu; Ayumi Kubota; Tetsuo Asakura

Spiders synthesize several kinds of silk fibers. In the primary structure of spider silk, one of the major ampullate (dragline, frame) silks, spidroin 1, and flagelliform silk (core fibers of adhesive spiral), there are common repeated X-Gly-Gly (X = Ala, Leu, Pro, Tyr, Glu, and Arg) sequences, which are considered to be related to the elastic character of these fibers. In this paper, two dimensional spin diffusion solid-state NMR under off magic angle spinning (OMAS), 13C chemical shift contour plots, and Rotational Echo DOuble Resonance (REDOR) were applied to determine the torsion angles of one Ala and two kinds of Gly residues in the Ala-Gly-Gly sequence of 13C=O isotope-labeled (Ala-Gly-Gly)10. The torsion angles were determined to be (φ, ψ) = (−90°, 150° ) within an experimental error of ±10° for each residue. This conformation is characterized as 31 helix which is in agreement with the structure proposed from the X-ray powder diffraction pattern of poly(Ala-Gly-Gly). The 31 helix of (Ala-Gly-Gly)10 does not change by formic acid treatment although (Ala-Gly)15 easily changes from the silk I conformation (the structure of Bombyx mori silk fibroin before spinning in the solid state) to silk II conformation (the structure of the silk fiber after spinning) by such treatment. Thus, the 31 helix conformation of (Ala-Gly-Gly)10 is considered very stable. Furthermore, the torsion angles of the 16th Leu residue of (Leu-Gly-Gly)10 were also determined as (φ, ψ) = (−90°, 150° ) and this peptide is also considered to take 31 helix conformation.


Journal of Magnetic Resonance | 2003

Determination of distance of intra-molecular hydrogen bonding in (Ala–Gly)15 with silk I form after removal of the effect of MAS frequency in REDOR experiment

Tsunenori Kameda; Chenhua Zhao; Jun Ashida; Tetsuo Asakura

It is important to know the structure of silk I (Bombyx mori silk structure before spinning in the solid state) in order to understand the mechanism of fiber formation at the atomic level. In this study, 15N-dephased, 13C-observe REDOR has been carried out to determine the atomic distance of intra-molecular hydrogen bond between the 13C=O carbon of the 14th Gly residue and the 15N nitrogen of the 17th Ala residue of (AG)(6)A[1-13C]GAG[15N]AG(AG)(6) with silk I form after removal of the effect of MAS frequency on the re-coupling. The distance was determined to be 4.3A, which confirmed the intra-molecular hydrogen bonding formation between these two atomic sites.


Journal of Magnetic Resonance | 2003

An application of the XiX decoupling for solid state 13C NMR with mobile samples.

Jun Ashida; Tetsuo Asakura

It is very important to obtain higher resolution solid state NMR spectra not only for crystal samples but also for mobile solid samples. We demonstrate that a robust proton decoupling technique, XiX (X inverse-X) decoupling, is very effective in high resolution solid state NMR measurement for mobile samples compared with the usual continuous wave proton decoupling.


Journal of Molecular Biology | 2001

A repeated β-turn structure in Poly(Ala-Gly) as a model for silk I of Bombyx mori silk fibroin studied with two-dimensional spin-diffusion NMR under off magic angle spinning and rotational echo double resonance

Tetsuo Asakura; Jun Ashida; Tsutomu Yamane; Tsunenori Kameda; Yasumoto Nakazawa; Kosuke Ohgo; Kohei Komatsu


Biomacromolecules | 2006

Solid-state NMR analysis of a peptide (Gly-Pro-Gly-Gly-Ala)6-Gly derived from a flagelliform silk sequence of Nephila clavipes

Kosuke Ohgo; Taiji Kawase; Jun Ashida; Tetsuo Asakura


Macromolecules | 2005

Structural Determination of an Elastin-Mimetic Model Peptide, (Val-Pro-Gly-Val-Gly)6, Studied by 13C CP/MAS NMR Chemical Shifts, Two-Dimensional off Magic Angle Spinning Spin-Diffusion NMR, Rotational Echo Double Resonance, and Statistical Distribution of Torsion Angles from Protein Data Bank

Kosuke Ohgo; Jun Ashida; Kristin K. Kumashiro; Tetsuo Asakura


Biomacromolecules | 2006

Heterogeneity in the conformation of valine in the elastin mimetic (LGGVG)6 as shown by solid-state 13C NMR SPEctroscopy.

Kosuke Ohgo; Walter P. Niemczura; Jun Ashida; Michi Okonogi; Tetsuo Asakura; Kristin K. Kumashiro


Journal of Magnetic Resonance | 2006

Hadamard NMR spectroscopy in solids

Jun Ashida; Ēriks Kupče; Jean-Paul Amoureux


Journal of Physical Chemistry B | 2002

Determination of the torsion angles of alanine and glycine residues of Bombyx mori silk fibroin and the model peptides in the silk I and silk II forms using 2D spin diffusion solid-state NMR under off magic angle spinning

Jun Ashida; Kosuke Ohgo; Tetsuo Asakura


Polymer Journal | 2003

Conformational characterization of (Val-Pro-Gly-Val-Gly)6 with 13C solid state NMR

Tetsuo Asakura; Jun Ashida; Kosuke Ohgo

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Tetsuo Asakura

Tokyo University of Agriculture and Technology

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Kosuke Ohgo

Tokyo University of Agriculture and Technology

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Tsunenori Kameda

Tokyo University of Agriculture and Technology

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Kohei Komatsu

Tokyo University of Agriculture and Technology

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Tsutomu Yamane

Yokohama City University

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Yasumoto Nakazawa

Tokyo University of Agriculture and Technology

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Ayumi Kubota

Tokyo University of Agriculture and Technology

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Chenhua Zhao

Tokyo University of Agriculture and Technology

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Michi Okonogi

Tokyo University of Agriculture and Technology

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