Junde Dong

Identification of coastal water quality by statistical analysis methods in Daya Bay, South China Sea.

In this paper, cluster analysis (CA), principal component analysis (PCA) and the fuzzy logic approach were employed to evaluate the trophic status of water quality for 12 monitoring stations in Daya Bay in 2003. CA grouped the four seasons into four groups (winter, spring, summer and autumn) and the sampling sites into two groups (cluster DA: S1, S2, S4-S7, S9 and S12 and cluster DB: S3, S8, S10 and S11). PCA identified the temporal and spatial characteristics of trophic status in Daya Bay. Cluster DB, with higher concentrations of TP and DIN, is located in the western and northern parts of Daya Bay. Cluster DA, with the low Secchi, is located in the southern and eastern parts of Daya Bay. The fuzzy logic approach revealed more information about the temporal and spatial patterns of the trophic status of water quality. Chlorophyll a, TP and Secchi may be major factors for deteriorating water quality.

The status of the ecological environment and a proposed protection strategy in Sanya Bay, Hainan Island, China

Sanya Bay encompasses a high diversity of natural habitats, ranging from coral reefs, rocky and sandy shores and mudflats to mangroves. Seasonal physicochemical and biological investigations were conducted from 1998 to 1999 and again in April 2000. Water-related environmental quality in Sanya Bay is in good condition. The levels of dissolved oxygen, nitrogen, phosphorus and heavy metals are within the first class of National Seawater Quality Standards for China. Annual mean values of chlorophyll a of 0.93 mg m(-3) and phytoplankton primary productivity of 440.8 mgC m(-2)d(-1), respectively, were found in the waters, both of which show a significant correlation with inorganic nitrogen. A mean new productivity of 144.6 mgC m(-2) d(-1) was recorded in summer. Sanya Bay is rich in natural resources and biodiversity with 235 species of phytoplankton and 129 species of zooplankton identified in the survey. The annual mean abundance of phytoplankton and zooplankton were 1564 x 10 cells m(-3) and 121 individuals m(-3), respectively, with an annual mean zooplankton biomass of 129 mg m(-3). A total of 243 species of fish were sampled in the survey including many of high economic value. Three hundred and eighty-four species of benthos in 121 families were found by mud sampling and trawling. The average biomass of benthic organisms was 11.55 gm(-2), with a density of 31 individuals m(-2). Molluscs were the dominant group, followed by crustaceans; coelenterates exhibited the lowest biomass. One hundred and twenty-six species from 48 families of intertidal organisms were collected by frame sampling, with a mean annual biomass of 644.7 gm(-2) and average density of 816 individuals m(-2). The highest biomass of 1673.5 gm(-2) was collected in a coral reef region, while the highest density of 1219 individuals m(-2) occurred in a mangrove region. The coastline is characterized by coral reefs that accounts for 30% of the total coastline length in the bay, so coral reefs are a key ecosystem that are important for maintaining the regional marine resources and biodiversity. We need to pay much more attention to such diverse marine resources to maintain the integrity and function of these coastal ecosystems.

Identification of anthropogenic effects and seasonality on water quality in Daya Bay, South China Sea.

Thirteen water quality parameters from 12 monitoring stations were collected to study the effects caused by climate and anthropogenic activities on water quality in 2003 in Daya Bay, South China Sea. The data matrix has been built according to the results, which were analyzed by fuzzy c-mean cluster (FCM) and cluster analysis (CA). This analysis has identified anthropogenic effects and seasonal characters of water quality. The dry and wet seasonality have been demonstrated with FCM and CA. The precipitation and the Southeast Asian monsoons, northeasterly from October to the next April and southwesterly from May to September have also an important influence on water quality in Daya Bay. In the spatial pattern, two groups have been classified with FCM and CA. Cluster I consisted of the sites S3, S8, S10 and S11 in the west and north coastal parts of Daya Bay. Cluster I is mainly related to anthropogenic activities such as fish-farming. Cluster II consisted of the rest of the stations in the center, east and south parts of Daya Bay. Cluster II is mainly related to seawater input from South China Sea. Thus, fuzzy c-mean cluster and cluster analysis can be an important tool for the successful characterization of regional-scale water quality.

Bacterial dynamics within the mucus, tissue and skeleton of the coral Porites lutea during different seasons

Investigation of the response of coral microbial communities to seasonal ecological environment at the microscale will advance our understanding of the relationship between coral-associated bacteria community and coral health. In this study, we examined bacteria community composition from mucus, tissue and skeleton of Porites lutea and surrounding seawater every three months for 1 year on Luhuitou fringing reef. The bacterial communities were analyzed using pyrosequencing of the V1-V2 region of the 16S rRNA gene, which demonstrated diverse bacterial consortium profiles in corals. The bacterial communities in all three coral compartments studied were significantly different from the surrounding seawater. Moreover, they had a much more dynamic seasonal response compared to the seawater communities. The bacterial communities in all three coral compartments collected in each seasonal sample tended to cluster together. Analysis of the relationship between bacterial assemblages and the environmental parameters showed that the bacterial community correlated to dissolved oxygen and rainfall significantly at our study site. This study highlights a dynamic relationship between the high complexity of coral associated bacterial community and seasonally varying ecosystem parameters.

Marinactinospora thermotolerans gen. nov., sp. nov., a marine actinomycete isolated from a sediment in the northern South China Sea

A novel marine actinomycete, designated SCSIO 00652(T), was isolated from a marine sediment collected from the northern South China Sea at a depth of 3865 m. The strain formed branched substrate mycelia and no fragmentation was found. Abundant aerial mycelia differentiated into long spore chains and the spores had a wrinkled surface. Growth occurred on ISP medium 2 with 0-5 % (w/v) NaCl and at 10-55 degrees C. The whole-cell hydrolysate contained meso-diaminopimelic acid and glucose as the whole-cell sugar. blast search results based on an almost-complete 16S rRNA gene sequence showed the novel strain had the highest similarity (96.5 %) with Nocardiopsis trehalosi VKM Ac-942(T). The phylogenetic tree of the family Nocardiopsaceae indicated that strain SCSIO 00652(T) formed a distinct lineage at the deepest branch with a high bootstrap value. Additionally, the profiles of menaquinones, phospholipids and fatty acids showed there were marked differences between strain SCSIO 00652(T) and the recognized genera of the family Nocardiopsaceae. Based on the polyphasic data, a new genus, Marinactinospora gen. nov., is proposed within the family Nocardiopsaceae with the type species Marinactinospora thermotolerans sp. nov. The type strain of the type species is SCSIO 00652(T) (=DSM 45154(T)=CCTCC AA 208041(T)).

The effect of multiple heavy metals on ascorbate, glutathione and related enzymes in two mangrove plant seedlings [Kandelia candel and Bruguiera gymnorrhiza]

The effect of multiple heavy metals on ascorbate, glutathione and related enzymes in two mangrove plant seedlings (Kandelia candel and Bruguiera gymnorrhiza) In this study, the effect of multiple heavy metal stress on ascorbate (AsA), glutathione (GSH) and related enzymes was investigated in the leaves, stems and roots of Kandelia candel and Bruguiera gymnorrhiza. Mangrove seedlings were treated with five different concentrations of a heavy metal mixture (Cd2+, Pb2+ and Hg2+). Antioxidants in both the species were analyzed after one month. AsA, GSH, ascorbate peroxidase (APX, EC 1.11.1.11) and glutathione reductase (GR, EC 1.6.4.2) exhibited a similar trend with initial increase and subsequent decrease in response to heavy metal stress. At the highest metal concentration, a significant decrease of AsA and GR was observed in K. candel and B. gymnorrhiza. Glutathione peroxidase (GPX, EC 1.11.1.9) in the leaves, stems and roots of K. candel reached their respective maximal values at the highest metal concentration, whereas GPX activity in roots and stems of B. gymnorrhiza was similar to the controls at higher metal concentrations. Our results demonstrate that AsA, GSH, APX, GR and GPX in K. candel may play more important roles in defending against reactive oxygen species (ROS) than those in B. gymnorrhiza.

Phylogenetic diversity of nitrogen-fixing bacteria in mangrove sediments assessed by PCR-denaturing gradient gel electrophoresis

Culture-independent PCR–denaturing gradient gel electrophoresis (DGGE) was employed to assess the composition of diazotroph species from the sediments of three mangrove ecosystem sites in Sanya, Hainan Island, China. A strategy of removing humic acids prior to DNA extraction was conducted, then total community DNA was extracted using the soil DNA kit successfully for nifH PCR amplification, which simplified the current procedure and resulted in good DGGE profiles. The results revealed a novel nitrogen-fixing bacterial profile and fundamental diazotrophic biodiversity in mangrove sediments, as reflected by the numerous bands present DGGE patterns. Canonical correspondence analysis (CCA) revealed that the sediments organic carbon concentration and available soil potassium accounted for a significant amount of the variability in the nitrogen-fixing bacterial community composition. The predominant DGGE bands were sequenced, yielding 31 different nifH sequences, which were used in phylogenetic reconstructions. Most sequences were from Proteobacteria, e.g. α, γ, β, δ-subdivisions, and characterized by sequences of members of genera Azotobacter, Desulfuromonas, Sphingomonas, Geobacter, Pseudomonas, Bradyrhizobium and Derxia. These results significantly expand our knowledge of the nitrogen-fixing bacterial diversity of the mangrove environment.

A New 1,4-Diazepine from South China Sea Marine Sponge Callyspongia Species

A new 1,4-diazepine, callysponine (1), was isolated from a South China Sea Callyspongia sp. marine sponge, together with four known proline-based diketopiperazines: cyclo-(S-Pro-R-Leu) (2), cyclo-(S-Pro-R-Val) (3), cyclo-(S-Pro-R-Ala) (4), and cyclo-(S-Pro-R-Tyr) (5). The new structure was determined on the basis of NMR and MS analysis, and the absolute stereochemistry was defined by NOESY spectroscopy and optical rotation. The structures of the known compounds were identified by comparison of their spectroscopic data with those reported in the literature. Callysponine (1) did not inhibit the growth of HepG2 (hepatoma carcinoma cell), A549 (lung carcinoma cell), and HeLa (cervical cancer cell) cell lines.

Seasonal Variation of Water Quality and Phytoplankton Response Patterns in Daya Bay, China

Data collected from 12 stations in Daya Bay in different seasons in 2002 revealed the relation between water quality and phytoplankton response patterns. The results showed that Daya Bay could be divided into wet and dry seasons by multivariate statistical analysis. Principal component analysis indicated that temperature, chlorophyll a and nutrients were important components during the wet season (summer and autumn). The salinity and dissolved oxygen were the main environmental factors in the dry season (winter and spring). According to non-metric multidimensional scaling, there was a shift from the large diatoms in the dry season to the smaller line-chain taxa in the wet season with the condition of a high dissolved inorganic nitrogen and nitrogen to phosphorous concentration ratio. Nutrient changes can thus alter the phytoplankton community composition and biomass, especially near the aquaculture farm areas. There was no evidence of an effect of thermal water from the nearby nuclear power plants on the observed changes in phytoplankton community and biomass in 2002.

Mangrovibacterium diazotrophicum gen. nov., sp. nov., a nitrogen-fixing bacterium isolated from a mangrove sediment, and proposal of Prolixibacteraceae fam. nov.

A nitrogen-fixing bacterium, designated strain SCSIO N0430(T), was isolated from a mangrove sediment sample. Analysis of the sequence of the nifH gene responsible for nitrogen fixation in this strain indicated a close relationship to an uncultured bacterium ZNZ-D11 (GenBank accession no. JF896696). 16S rRNA gene sequence analysis revealed that this isolate had less than 93 % similarity to its closest relative, Sunxiuqinia elliptica DQHS4(T). A phylogenetic tree reconstructed based on 16S rRNA gene sequences revealed that strain SCSIO N0430(T) was a member of the phylum Bacteroidetes. Chemotaxonomic and physiological characteristics, including phospholipids and major fatty acids, readily distinguished the isolate from established members of the phylum Bacteroidetes. It is concluded that strain SCSIO N0430(T) represents a novel genus and species, for which the name Mangrovibacterium diazotrophicum gen. nov., sp. nov. is proposed, with the type strain of the species SCSIO N0430(T) ( = KCTC 32129(T) = DSM 27148(T) = JCM 19152(T)). Based on phylogenetic characteristics and 16S rRNA gene signature nucleotide patterns, the three genera Sunxiuqinia, Prolixibacter and Mangrovibacterium are proposed to make up a novel family, Prolixibacteraceae fam. nov., in the order Bacteroidales.