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Dive into the research topics where Justin B. Hooper is active.

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Featured researches published by Justin B. Hooper.


Proceedings of the National Academy of Sciences of the United States of America | 2013

Chiral heliconical ground state of nanoscale pitch in a nematic liquid crystal of achiral molecular dimers

Dong Chen; Jan H. Porada; Justin B. Hooper; Arthur Klittnick; Yongqiang Shen; Michael R. Tuchband; Eva Korblova; Dmitry Bedrov; David M. Walba; Matthew A. Glaser; Joseph E. Maclennan; Noel A. Clark

Significance The appearance of new nematic liquid crystal (LC) equilibrium symmetry (ground state) is a rare and typically important event. The first and second nematics were the helical phase and blue phase of chiral molecules, both found in 1886 in cholesteryl benzoate by Reinitzer, discoveries that marked the birth of LC science. The third nematic, the achiral uniaxial phase, also found in the 19th century, ultimately formed the basis of LC display technology and the portable computing revolution of the 20th century. Despite this achievement, the 20th can claim only the fourth nematic, the lyotropic biaxial phases found by Saupe. Now, early in the 21st, the heliconical structure of the fifth nematic is observed, an exotic chiral helix from achiral molecules. Freeze-fracture transmission electron microscopy study of the nanoscale structure of the so-called “twist–bend” nematic phase of the cyanobiphenyl (CB) dimer molecule CB(CH2)7CB reveals stripe-textured fracture planes that indicate fluid layers periodically arrayed in the bulk with a spacing of d ∼ 8.3 nm. Fluidity and a rigorously maintained spacing result in long-range-ordered 3D focal conic domains. Absence of a lamellar X-ray reflection at wavevector q ∼ 2π/d or its harmonics in synchrotron-based scattering experiments indicates that this periodic structure is achieved with no detectable associated modulation of the electron density, and thus has nematic rather than smectic molecular ordering. A search for periodic ordering with d ∼ in CB(CH2)7CB using atomistic molecular dynamic computer simulation yields an equilibrium heliconical ground state, exhibiting nematic twist and bend, of the sort first proposed by Meyer, and envisioned in systems of bent molecules by Dozov and Memmer. We measure the director cone angle to be θTB ∼ 25° and the full pitch of the director helix to be pTB ∼ 8.3 nm, a very small value indicating the strong coupling of molecular bend to director bend.


Proceedings of the National Academy of Sciences of the United States of America | 2013

A Twist-Bend Chiral Helix of 8nm Pitch in a Nematic Liquid Crystal of Achiral Molecular Dimers

Dong Chen; Jan H. Porada; Justin B. Hooper; Arthur Klittnick; Yongqiang Shen; Eva Korblova; Dmitry Bedrov; David M. Walba; Matthew A. Glaser; Joseph E. Maclennan; Noel A. Clark

Significance The appearance of new nematic liquid crystal (LC) equilibrium symmetry (ground state) is a rare and typically important event. The first and second nematics were the helical phase and blue phase of chiral molecules, both found in 1886 in cholesteryl benzoate by Reinitzer, discoveries that marked the birth of LC science. The third nematic, the achiral uniaxial phase, also found in the 19th century, ultimately formed the basis of LC display technology and the portable computing revolution of the 20th century. Despite this achievement, the 20th can claim only the fourth nematic, the lyotropic biaxial phases found by Saupe. Now, early in the 21st, the heliconical structure of the fifth nematic is observed, an exotic chiral helix from achiral molecules. Freeze-fracture transmission electron microscopy study of the nanoscale structure of the so-called “twist–bend” nematic phase of the cyanobiphenyl (CB) dimer molecule CB(CH2)7CB reveals stripe-textured fracture planes that indicate fluid layers periodically arrayed in the bulk with a spacing of d ∼ 8.3 nm. Fluidity and a rigorously maintained spacing result in long-range-ordered 3D focal conic domains. Absence of a lamellar X-ray reflection at wavevector q ∼ 2π/d or its harmonics in synchrotron-based scattering experiments indicates that this periodic structure is achieved with no detectable associated modulation of the electron density, and thus has nematic rather than smectic molecular ordering. A search for periodic ordering with d ∼ in CB(CH2)7CB using atomistic molecular dynamic computer simulation yields an equilibrium heliconical ground state, exhibiting nematic twist and bend, of the sort first proposed by Meyer, and envisioned in systems of bent molecules by Dozov and Memmer. We measure the director cone angle to be θTB ∼ 25° and the full pitch of the director helix to be pTB ∼ 8.3 nm, a very small value indicating the strong coupling of molecular bend to director bend.


Journal of Chemical Physics | 2004

Structure, surface excess and effective interactions in polymer nanocomposite melts and concentrated solutions.

Justin B. Hooper; Kenneth S. Schweizer; Tapan G. Desai; R. Koshy; Pawel Keblinski

The Polymer Reference Interaction Site Model (PRISM) theory is employed to investigate structure, effective forces, and thermodynamics in dense polymer-particle mixtures in the one and two particle limit. The influence of particle size, degree of polymerization, and polymer reduced density is established. In the athermal limit, the surface excess is negative implying an entropic dewetting interface. Polymer induced depletion interactions are quantified via the particle-particle pair correlation function and potential of mean force. A transition from (nearly) monotonic decaying, attractive depletion interactions to much stronger repulsive-attractive oscillatory depletion forces occurs at roughly the semidilute-concentrated solution boundary. Under melt conditions, the depletion force is extremely large and attractive at contact, but is proceeded by a high repulsive barrier. For particle diameters larger than roughly five monomer diameters, division of the force by the particle radius results in a nearly universal collapse of the depletion force for all interparticle separations. Molecular dynamics simulations have been employed to determine the depletion force for nanoparticles of a diameter five times the monomer size over a wide range of polymer densities spanning the semidilute, concentrated, and melt regimes. PRISM calculations based on the spatially nonlocal hypernetted chain closure for particle-particle direct correlations capture all the rich features found in the simulations, with quantitative errors for the amplitude of the depletion forces at the level of a factor of 2 or less. The consequences of monomer-particle attractions are briefly explored. Modification of the polymer-particle pair correlations is relatively small, but much larger effects are found for the surface excess including an energetic driven transition to a wetting polymer-particle interface. The particle-particle potential of mean force exhibits multiple qualitatively different behaviors (contact aggregation, steric stabilization, local bridging attraction) depending on the strength and spatial range of the polymer-particle attraction.


Journal of Chemical Physics | 2009

Shock-induced transformations in crystalline RDX: a uniaxial constant-stress Hugoniostat molecular dynamics simulation study.

Dmitry Bedrov; Justin B. Hooper; Grant D. Smith; Thomas D. Sewell

Molecular dynamics (MD) simulations of uniaxial shock compression along the [100] and [001] directions in the alpha polymorph of hexahydro-1,3,5-trinitro-1,3,5-triazine (alpha-RDX) have been conducted over a wide range of shock pressures using the uniaxial constant stress Hugoniostat method [Ravelo et al., Phys. Rev. B 70, 014103 (2004)]. We demonstrate that the Hugoniostat method is suitable for studying shock compression in atomic-scale models of energetic materials without the necessity to consider the extremely large simulation cells required for an explicit shock wave simulation. Specifically, direct comparison of results obtained using the Hugoniostat approach to those reported by Thompson and co-workers [Phys. Rev. B 78, 014107 (2008)] based on large-scale MD simulations of shocks using the shock front absorbing boundary condition (SFABC) approach indicates that Hugoniostat simulations of systems containing several thousand molecules reproduced the salient features observed in the SFABC simulations involving roughly a quarter-million molecules, namely, nucleation and growth of nanoscale shear bands for shocks propagating along the [100] direction and the polymorphic alpha-gamma phase transition for shocks directed along the [001] direction. The Hugoniostat simulations yielded predictions of the Hugoniot elastic limit for the [100] shock direction consistent with SFABC simulation results.


Langmuir | 2008

Supramolecular self-organization in PEO-modified C60 fullerene/water solutions: influence of polymer molecular weight and nanoparticle concentration.

Justin B. Hooper; Dmitry Bedrov; Grant D. Smith

Utilizing a first-principles-based coarse-grained implicit solvent model, we have investigated the self-association of C(60) fullerenes that have been symmetrically modified with six grafted poly(ethylene oxide) (PEO) chains in aqueous solution. Despite the highly symmetric nature of the pair interactions between PEO-grafted fullerenes, their supramolecular assemblies are highly anisotropic and resemble the linear clusters formed in Stockmayer fluids. The dipole-like interaction between these symmetrically modified fullerenes results from the shielding of the C(60) fullerenes by PEO, favoring the addition of more PEO-grafted fullerenes to the linear clusters at the relatively unprotected ends. At low nanoparticle concentrations, self-association is dominated by the formation of stable dimers and trimers resulting from fullerene-fullerene contact and favorable PEO-fullerene interactions. With increasing nanoparticle concentration, larger clusters become increasingly probable. The molecular weight of the PEO tethers can be treated as a temperature-like analogue, with a reduction in average cluster size with increasing chain length due to increased steric repulsion, which is qualitatively similar to effects observed in Stockmayer fluids with increasing temperature. The role of PEO in supramolecular self-organization in PEO-modified C(60) fullerene/water solutions is complex, contributing not only to steric stabilization but also to favorable energetic interactions, nanoparticle shielding, and depletion-driven aggregation.


Journal of Chemical Physics | 2009

A molecular dynamics simulation study of the pressure-volume-temperature behavior of polymers under high pressure.

Justin B. Hooper; Dmitry Bedrov; Grant D. Smith; Ben Hanson; Oleg Borodin; Dana M. Dattelbaum; Edward M. Kober

Isothermal compression of poly (dimethylsiloxane), 1,4-poly(butadiene), and a model Estane (in both pure form and a nitroplasticized composition similar to PBX-9501 binder) at pressures up to 100 kbars has been studied using atomistic molecular dynamics (MD) simulations. Comparison of predicted compression, bulk modulus, and U(s)-u(p) behavior with experimental static and dynamic compression data available in the literature reveals good agreement between experiment and simulation, indicating that MD simulations utilizing simple quantum-chemistry-based potentials can be used to accurately predict the behavior of polymers at relatively high pressure. Despite their very different zero-pressure bulk moduli, the compression, modulus, and U(s)-u(p) behavior (including low-pressure curvature) for the three polymers could be reasonably described by the Tait equation of state (EOS) utilizing the universal C parameter. The Tait EOS was found to provide an excellent description of simulation PVT data when the C parameter was optimized for each polymer. The Tait EOS parameters, namely, the zero-pressure bulk modulus and the C parameter, were found to correlate well with free volume for these polymers as measured in simulations by a simple probe insertion algorithm. Of the polymers studied, PDMS was found to have the most free volume at low pressure, consistent with its lower ambient pressure bulk modulus and greater increase in modulus with increasing pressure (i.e., crush-up behavior).


Physical Chemistry Chemical Physics | 2010

Molecular dynamics simulations of N,N,N,N-tetramethylammonium dicyanamide plastic crystal and liquid using a polarizable force field

Justin B. Hooper; Oleg Borodin

A quantum chemistry based, dipole polarizable force field has been used to simulate the N,N,N,N-tetramethylammonium (TMA) dicyanamide (DCA) ionic salt, in both plastic crystalline and liquid phases. Simulations predicted the [TMA][DCA] crystal structure and dimensions in good agreement with experiment. Ion-counterion spatial distributions are used to understand the local environment and ion pairing of both ions in crystalline and liquid phases. The rotational dynamics of ions in the crystalline system are thoroughly explored. Arrest of the DCA rotational degrees of freedom was associated with the experimentally observed solid-solid phase transitions. The self-diffusion coefficient and conductivity were calculated for the liquid state; however no net ion diffusion is noted in the pristine crystalline state. Introduction of ion vacancy at 0.3% concentration is found to be sufficient to enable ion diffusive behavior and conduction at 425 K in the crystalline state, with good agreement found between the experimental and simulated conductivity.


Journal of Chemical Physics | 2012

Molecular dynamics simulation studies of the influence of imidazolium structure on the properties of imidazolium/azide ionic liquids

Justin B. Hooper; Oleg Starovoytov; Oleg Borodin; Dmitry Bedrov; Grant D. Smith

Atomistic molecular dynamics simulations were performed on 1-butyl-3-methyl-imidazolium azide [bmim][N(3)], 1-butyl-2,3-dimethylimidazolium azide [bmmim][N(3)], and 1-butynyl-3-methyl-imidazolium azide [bumim][N(3)] ionic liquids. The many-body polarizable APPLE&P force field was augmented with parameters for the azide anion and the bumim cation. Good agreement between the experimentally determined and simulated crystal structure of [bumim][N(3)] as well as the liquid-state density and ionic conductivity of [bmmim][N(3)] were found. Methylation of bmim (yielding bmmim) resulted in dramatic changes in ion structuring in the liquid and slowing of ion motion. Conversely, replacing the butyl group of bmim with the smaller 2-butynyl group resulted in an increase of ion dynamics.


Liquid Crystals | 2014

Effect of counter-ion on the thermotropic liquid crystal behaviour of bis(alkyl)-tris(imidazolium salt) compounds

Magdalene R. Schenkel; Justin B. Hooper; Mark Moran; Lily A. Robertson; Dmitry Bedrov; Douglas L. Gin

Recently, new thermotropic ionic liquid crystals (LCs) with a hexyl-linked tris(imidazolium bromide) core and two terminal alkyl chains were synthesised and characterised. To explore the effect of different counter-ions on the LC behaviour of this system, derivatives with BF4− and Tf2N− counter-ions were prepared and analysed. Five of the BF4− derivatives were found to exhibit thermotropic LC behaviour. The 12-, 14- and 16-carbon tail BF4− compounds form SmA phases. The 18- and 20-carbon tail homologues form what appears to be a smectic phase but are weakly mesogenic and harder to characterise. Only two of the Tf2N− derivatives exhibited mesogenic behaviour. The 18-carbon tail Tf2N− compound forms an as-yet unidentified, highly periodic smectic phase with positional order while the 20-carbon tail homologue forms a periodic SmA phase. The Tf2N− mesogens have much lower clearing points even though their LC phases have more order than the Br− and BF4− mesogens. X-ray diffraction showed that these mesogens have different amounts of tail interdigitation between the smectic layers depending on the counter-ion present. Atomistic molecular dynamics simulations indicated that counter-ion size plays an important role in defining the density of the ionic region, which in turn affects the amount of interdigitation in the smectic phases.


Journal of Chemical Physics | 2003

Density fluctuation correlation length in polymer fluids

R. Koshy; Tapan G. Desai; Pawel Keblinski; Justin B. Hooper; Kenneth S. Schweizer

We employ molecular dynamics simulations and integral equation theory to study the real space collective density correlations in chain polymer fluids over a wide range of concentrations. For a degree of polymerization of 80 and low polymer concentrations, simulation and theory both find the typical behavior that the density–density correlation function decays monotonically with an associated correlation length that decreases with polymer concentration. In contrast, at high polymer concentrations the correlation function decays in an oscillatory manner with a correlation length that grows with fluid density. The correlation length is found to be smallest at a reduced polymer density corresponding to the onset of monomer scale oscillations in the density correlation function. Based on the theory, qualitatively identical behavior is found for chains of 2000 monomers. The observed density dependence of the correlation length is analogous to the dependence of the charge screening length on ionic strength in el...

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Pawel Keblinski

Rensselaer Polytechnic Institute

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Matthew A. Glaser

University of Colorado Boulder

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Noel A. Clark

University of Colorado Boulder

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Tapan G. Desai

Rensselaer Polytechnic Institute

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