Jyotisna Saxena

Exploitation of dietary tannins to improve rumen metabolism and ruminant nutrition

Tannins (hydrolysable and condensed tannin) are polyphenolic polymers of relatively high molecular weight with the capacity to form complexes mainly with proteins due to the presence of a large number of phenolic hydroxyl groups. They are widely distributed in nutritionally important forage trees, shrubs and legumes, cereals and grains, which are considered as anti-nutritional compounds due to their adverse effects on intake and animal performance. However, tannins have been recognised to modulate rumen fermentation favourably such as reducing protein degradation in the rumen, prevention of bloat, inhibition of methanogenesis and increasing conjugated linoleic acid concentrations in ruminant-derived foods. The inclusion of tannins in diets has been shown to improve body weight and wool growth, milk yields and reproductive performance. However, the beneficial effects on rumen modulation and animal performance have not been consistently observed. This review discusses the effects of tannins on nitrogen metabolism in the rumen and intestine, and microbial populations (bacteria, protozoa, fungi and archaea), metabolism of tannins, microbial tolerance mechanisms to tannins, inhibition of methanogenesis, ruminal biohydrogenation processes and performance of animals. The discrepancies of responses of tannins among different studies are attributed to the different chemical structures (degree of polymerisation, procyanidins to propdelphinidins, stereochemistry and C-C bonding) and concentrations of tannins, and type of diets. An establishment of structure-activity relationship would be required to explain differences among studies and obtain consistent beneficial tannin effects.

Microbial Profiles of Rhizosphere and Bulk Soil Microbial Communities of Biofuel Crops Switchgrass (Panicum virgatum L.) and Jatropha (Jatropha curcas L.)

The production of biofuels from the low-input energy crops, switchgrass (Panicum virgatum L.) and jatropha (Jatropha curcas L.), is a sustainable approach that can provide more usable energy and environmental benefits than food-based biofuels. Plant rhizosphere affects the microbial community structure due to variations in root exudation rates and residue chemistry. The objective of this investigation was to determine the profiles of microbial communities associated with rhizosphere and bulk soils of switchgrass or jatropha using phospholipid fatty acid (PLFA) analysis and length heterogeneity PCR (LH-PCR). Switchgrass soil contained a significantly (Pl0.05) higher abundance of Gram-positive (i14:0, i15:0, a15:0), Gram-negative (16:1ω5c, 16:1ω7c, 18:1ω5c), and saturated (14:0, 15:0) PLFAs compared to jatropha soil, whereas jatropha had a higher abundance of fungal (18:2ω6, 9c), 18:1ω9c, 20:1ω9c, and 18:0 PLFAs compared to switchgrass soil. Irrespective of plant type, rhizosphere soil contained a significantly (Pl0.05) higher abundance of saturated PLFAs (16:0, 18:0, 20:0), actinomycetes (10Me17:0), and fungal (18:2ω6, 9c) PLFAs compared to bulk soil; whereas bulk soil had higher abundance of saturated (14:0), Gram-negative (16:1ω9c, 16:1ω5c, 16:1ω7c), and 18:1ω9c PLFAs compared to rhizosphere soil. Multivariate principle component analysis of PLFAs and LH-PCR percent relative peak areas successfully differentiated the microbial communities of rhizosphere and bulk soils of switchgrass and jatropha.

Comparison of Whole-Cell Fatty Acid (MIDI) or Phospholipid Fatty Acid (PLFA) Extractants as Biomarkers to Profile Soil Microbial Communities

The whole-cell lipid extraction to profile microbial communities on soils using fatty acid (FA) biomarkers is commonly done with the two extractants associated with the phospholipid fatty acid (PLFA) or Microbial IDentification Inc. (MIDI) methods. These extractants have very different chemistry and lipid separation procedures, but often shown a similar ability to discriminate soils from various management and vegetation systems. However, the mechanism and the chemistry of the exact suite of FAs extracted by these two methods are poorly understood. Therefore, the objective was to qualitatively and quantitatively compare the MIDI and PLFA microbial profiling methods for detecting microbial community shifts due to soil type or management. Twenty-nine soil samples were collected from a wide range of soil types across Oregon and extracted FAs by each method were analyzed by gas chromatography (GC) and GC-mass spectrometry. Unlike PLFA profiles, which were highly related to microbial FAs, the overall MIDI-FA profiles were highly related to the plant-derived FAs. Plant-associated compounds were quantitatively related to particulate organic matter (POM) and qualitatively related to the standing vegetation at sampling. These FAs were negatively correlated to respiration rate normalized to POM (RespPOM), which increased in systems under more intensive management. A strong negative correlation was found between MIDI-FA to PLFA ratios and total organic carbon (TOC). When the reagents used in MIDI procedure were tested for the limited recovery of MIDI-FAs from soil with high organic matter, the recovery of MIDI-FA microbial signatures sharply decreased with increasing ratios of soil to extractant. Hence, the MIDI method should be used with great caution for interpreting changes in FA profiles due to shifts in microbial communities.

Dietary Tannins on Microbial Ecology of the Gastrointestinal Tract in Ruminants

This review discusses the effects of tannins on nitrogen metabolism in the rumen and intestine, microbial populations (bacteria, protozoa, fungi and archaea), metabolism of tannins, microbial tolerance mechanisms to tannins, inhibition of methanogenesis, ruminal biohydrogenation processes and performance of animals. The discrepancies in responses of tannins among different studies are attributed to the different chemical structures (degree of polymerization, procyanidins to propdelphinidins, stereochemistry and C–C bonding), different concentrations of tannins, and type of diets. An establishment of structure-activity relationship would be required to explain differences among studies and obtain consistent beneficial tannin effects. This paper reviews progress with plant tannins occurring in both temperate and tropical forages for fulfilling the objective of mode of action of tannins, rumen microbial activity and rumen metabolisms.

Fate of Carbon in Water-Stable Aggregates during Decomposition of 13C-Labeled Corn Straw

Fundamental knowledge about decomposition, fate of crop residue, and allocation of residue-derived carbon (C) in soil aggregates is essential to understand the C dynamics in soil. The incorporation of C derived from corn residue in water-stable aggregate fractions, particulate organic C (POC), and mineral-associated C (MAC) in soil were examined using the 13C tracer technique. Soil was treated with corn straw at the rate of 1% dry mass of soil brought to 66% of field capacity and incubated for 70 days at 25 °C. Samples were taken at 20, 35, and 70 days and analyzed for water-stable aggregates. Values for POC and MAC were analyzed for total C and 13C enrichment. The addition of corn straw caused a shift in the distribution of recoverable particles with significant decreases in <53-μm silts and clays, microaggregrates (53–250 μm), and smaller macroaggegates (250–2000 μm); however, the large macroaggegates (>2000 μm) increased significantly. Macroaggregates contained greater amount of C than microaggregates. The proportion of 13C recovered in the fractions <53 μm (silt and clay), 53–250 μm, and 250–2000 μm increased during decomposition of corn straw, whereas there was no significant change in >2000-μm fraction. Most (70–76%) of the soil organic C was affiliated with MAC (<53 μm). Carbon (13C) derived from corn straw decreased in POC but increased in MAC as decomposition proceeded. In the long term, microaggregate fraction appears to be involved in storage and stabilization of the C derived from corn straw and is important for soil quality and soil C sequestration point of view.