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Featured researches published by K. Kooser.


Journal of Chemical Physics | 2013

Intramolecular photoelectron diffraction in the gas phase

K. Ueda; Catalin Miron; Etienne Plésiat; Luca Argenti; M. Patanen; K. Kooser; David Ayuso; S. Mondal; M. Kimura; K. Sakai; O. Travnikova; Alicia Palacios; Piero Decleva; Edwin Kukk; Fernando Martín

We report unambiguous experimental and theoretical evidence of intramolecular photoelectron diffraction in the collective vibrational excitation that accompanies high-energy photoionization of gas-phase CF4, BF3, and CH4 from the 1s orbital of the central atom. We show that the ratios between vibrationally resolved photoionization cross sections (v-ratios) exhibit pronounced oscillations as a function of photon energy, which is the fingerprint of electron diffraction by the surrounding atomic centers. This interpretation is supported by the excellent agreement between first-principles static-exchange and time-dependent density functional theory calculations and high resolution measurements, as well as by qualitative agreement at high energies with a model in which atomic displacements are treated to first order of perturbation theory. The latter model allows us to rationalize the results for all the v-ratios in terms of a generalized v-ratio, which contains information on the structure of the above three molecules and the corresponding molecular cations. A fit of the measured v-ratios to a simple formula based on this model suggests that the method could be used to obtain structural information of both neutral and ionic molecular species.


Journal of Chemical Physics | 2010

Fragmentation patterns of core-ionized thymine and 5-bromouracil

E. Itälä; D. T. Ha; K. Kooser; Elisabeth Rachlew; Michael A. Huels; Edwin Kukk

Photofragmentation of thymine and 5-bromouracil into cation and neutral fragments following the core ionization by soft x-rays using photoelectron-photoion-photoion coincidence technique has been studied. The fragment ion mass spectra were recorded in coincidence with the C 1s photoelectron spectra. In the case of thymine, deuterated samples were used to identify fragments. Deuteration or bromination allowed us to study not only the main fragmentation channels of these pyrimidine bases, but also to investigate if replacement of an exocyclic functional group affects molecular fragmentation. We found that the dominant fragmentation channels involve only one starting geometry, and the base ring and other bond cleavages, leading to the detected fragments, are essentially identical between thymine and 5-bromouracil. In addition, the relative intensities of the strongest fragmentation channels were determined and compared with calculated appearance energies using ab initio unrestricted Hartree-Fock theory.


Journal of Chemical Physics | 2012

Size selective spectroscopy of Se microclusters

K. Kooser; D. T. Ha; E. Itälä; Joakim Laksman; Samuli Urpelainen; Edwin Kukk

The electronic structure and photofragmentation in outer and inner valence regions of Se(n) (n ≤ 8) clusters produced by direct vacuum evaporation have been studied with size-selective photoelectron-photoion coincidence technique by using vacuum-ultraviolet synchrotron radiation. The experimental ionization potentials of these clusters were extracted from the partial ion yield measurements. The calculations for the possible geometrical structures of the Se(n) microclusters have been executed. The ionization energies of the clusters have been calculated and compared with the experimental results. In addition, theoretical fragment ion appearance energies were estimated. The dissociation energies of Se(n) clusters were derived from the recurrent relation between the gas phase enthalpies of the formation of corresponding cationic clusters and experimental ionization energies.


Journal of Physics: Condensed Matter | 2011

Persistent photoinduced magnetization in the coexisting spin-glass and ferromagnetic phases of Pr0.9Ca0.1MnO3 thin film

Sayani Majumdar; H. Huhtinen; M Svedberg; P. Paturi; Sari Granroth; K. Kooser

The persistent photoinduced magnetization (PPM) in the low bandwidth material Pr(1-x)Ca(x)MnO₃ at the low hole doping level of x = 0.1 is reported. Upon zero-field cooling under photoexcitation, significant improvement of the ferromagnetic (FM) ordering was observed in the low temperature spin-glass phase. However, upon field cooling, the FM ordering was found to be suppressed due to weakening of the double-exchange interaction. High kinetic energy x-ray photoelectron spectroscopy measurements indicated a slight increase in the Mn³⁺ peak under photoexcitation which clarifies the weakening of the FM interaction. The fast relaxation of the PPM is discussed in view of localization of spin polarons in sites of magnetic disorders and the results are compared with previous reports of PPM in intermediate bandwidth Pr₀.₉Ca₀.₁MnO₃ samples.


Journal of Physical Chemistry A | 2014

Fragmentation Dynamics of Doubly Charged Methionine in the Gas Phase

Dang Trinh Ha; Yang Wang; Manuel Alcamí; E. Itälä; K. Kooser; S. Urpelainen; M. A. Huels; Edwin Kukk; Fernando Martín

The dependence of the fragmentation of doubly charged gas-phase methionine (C5H11NO2S) on the electronic-state character of the parent ion is studied experimentally by energy-resolved electron ion-ion coincidence spectroscopy. The parent dication electronic states are populated by Auger transitions following site-specific sulfur 2p core ionization. Two fragmentation channels are observed to be strongly dependent on the electronic states with vacancies in weakly bound molecular orbitals. All-electron calculations are applied to assign doubly charged final states of sulfur 2p core ionized methionine. In addition, the Car-Parrinello method is applied to model fragmentation dynamics of doubly charged methionine molecules with various initial temperatures to understand the typical characteristics of the molecular dissociation and partly to support the interpretation of experimental data.


Journal of Chemical Physics | 2014

Soft x-ray ionization induced fragmentation of glycine

E. Itälä; K. Kooser; Elisabeth Rachlew; Michael A. Huels; E. Kukk

X-ray absorption commonly involves dissociative core ionization producing not only momentum correlated charged fragments but also low- and high-energy electrons capable of inducing damage in living tissue. This gives a natural motivation for studying the core ionization induced fragmentation processes in biologically important molecules such as amino acids. Here the fragmentation of amino acid glycine following carbon 1s core ionization has been studied. Using photoelectron-photoion-photoion coincidence technique, a detailed analysis on fragmentation of the sample molecule into pairs of momentum correlated cations has been carried out. The main characteristics of core ionization induced fragmentation of glycine were found to be the rupture of the C-Cα bond and the presence of the CNH(2)(+) fragment.


Journal of Physics B | 2014

Vibrationally resolved C 1s photoionization cross section of CF4

M. Patanen; K. Kooser; Luca Argenti; David Ayuso; M. Kimura; S. Mondal; Etienne Plésiat; A. Palacios; K. Sakai; O. Travnikova; P. Decleva; Edwin Kukk; Catalin Miron; K. Ueda; Fernando Martín

The differential photoionization cross section ratio (? = 1)/(? = 0) for the symmetric stretching mode in the C 1s photoionization of CF4 was studied both theoretically and experimentally. We observed this ratio to differ from the Franck?Condon ratio and to be strongly dependent on the photon energy, even far from the photoionization threshold. The density-functional theory computations show that the ratio is significantly modulated by the diffraction of the photoelectrons by the neighbouring atoms at high photon energies. At lower energies, the interpretation of the first very strong maximum observed about 60?eV above the photoionization threshold required detailed calculations of the absolute partial cross sections, which revealed that the absolute cross section has two maxima at lower energies, which turn into one maximum in the cross section ratio because the maxima appear at slightly different energies in ? = 1 and ? = 0 cross sections. These two strong, low-energy continuum resonances originate from the trapping of the continuum wavefunction in the molecular potential of the surrounding fluorine atoms and from the outgoing electron scattering by them.


Journal of Physical Chemistry B | 2014

Dissociation Pathways in the Cysteine Dication after Site-Selective Core Ionization

Joakim Laksman; K. Kooser; Helena Levola; E. Itälä; D. T. Ha; Elisabeth Rachlew; E. Kukk

A photoelectron-ion-ion coincidence experiment has been carried out on the amino acid molecule cysteine after core-ionization of the O 1s, N 1s, C 1s, and S 2p orbitals. A number of different dissociation channels have been identified. Some of them show strong site-selective dependence that can be attributed to a combination of nuclear motion in the core-ionized state and Auger processes that populate different final electronic states in the dication.


Journal of Physical Chemistry A | 2015

Vibrationally Resolved B 1s Photoionization Cross Section of BF3.

David Ayuso; M. Kimura; K. Kooser; M. Patanen; Etienne Plésiat; Luca Argenti; S. Mondal; O. Travnikova; K. Sakai; A. Palacios; Edwin Kukk; P. Decleva; K. Ueda; Fernando Martín; Catalin Miron

Photoelectron diffraction is a well-established technique for structural characterization of solids, based on the interference of the native photoelectron wave with those scattered from the neighboring atoms. For isolated systems in the gas phase similar studies suffer from orders of magnitude lower signals due to the very small sample density. Here we present a detailed study of the vibrationally resolved B 1s photoionization cross section of BF3 molecule. A combination of high-resolution photoelectron spectroscopy measurements and of state-of-the-art static-exchange and time-dependent DFT calculations shows the evolution of the photon energy dependence of the cross section from a complete trapping of the photoelectron wave (low energies) to oscillations due to photoelectron diffraction phenomena. The diffraction pattern allows one to access structural information both for the ground neutral state of the molecule and for the core-ionized cation. Due to a significant change in geometry between the ground and the B 1s(-1) core-ionized state in the BF3 molecule, several vibrational final states of the cation are populated, allowing investigation of eight different relative vibrationally resolved photoionization cross sections. Effects due to recoil induced by the photoelectron emission are also discussed.


Physical Chemistry Chemical Physics | 2016

Density functional simulation of resonant inelastic X-ray scattering experiments in liquids: acetonitrile

Johannes Niskanen; K. Kooser; Jaakko Koskelo; Tanel Käämbre; Kristjan Kunnus; Annette Pietzsch; Wilson Quevedo; Mikko Hakala; A. Föhlisch; Simo Huotari; Edwin Kukk

In this paper we report an experimental and computational study of liquid acetonitrile (H3C-C[triple bond, length as m-dash]N) by resonant inelastic X-ray scattering (RIXS) at the N K-edge. The experimental spectra exhibit clear signatures of the electronic structure of the valence states at the N site and incident-beam-polarization dependence is observed as well. Moreover, we find fine structure in the quasielastic line that is assigned to finite scattering duration and nuclear relaxation. We present a simple and light-to-evaluate model for the RIXS maps and analyze the experimental data using this model combined with ab initio molecular dynamics simulations. In addition to polarization-dependence and scattering-duration effects, we pinpoint the effects of different types of chemical bonding to the RIXS spectrum and conclude that the H2C-C[double bond, length as m-dash]NH isomer, suggested in the literature, does not exist in detectable quantities. We study solution effects on the scattering spectra with simulations in liquid and in vacuum. The presented model for RIXS proved to be light enough to allow phase-space-sampling and still accurate enough for identification of transition lines in physical chemistry research by RIXS.

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Elisabeth Rachlew

Royal Institute of Technology

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Fernando Martín

Autonomous University of Madrid

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