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Featured researches published by K. Stubbs.


Journal of Geophysical Research | 2007

Robotic ecological mapping: Habitats and the search for life in the Atacama Desert

Kimberley A. Warren-Rhodes; S. Weinstein; J. L. Piatek; James M. Dohm; Andrew N. Hock; Edwin Minkley; D. Pane; Lauren A. Ernst; G. Fisher; S. Emani; Alan S. Waggoner; Nathalie A. Cabrol; David Wettergreen; Edmond A. Grin; Peter Coppin; Chong Diaz; Jeffrey Edward Moersch; G. G. Oril; Trey Smith; K. Stubbs; G. Thomas; Michael D. Wagner; M. Wyatt; L. Ng Boyle

[1] As part of the three-year ‘Life in the Atacama’ (LITA) project, plant and microbial abundance were mapped within three sites in the Atacama Desert, Chile, using an automated robotic rover. On-board fluorescence imaging of six biological signatures (e.g., chlorophyll, DNA, proteins) was used to assess abundance, based on a percent positive sample rating system and standardized robotic ecological transects. The percent positive rating system scored each sample based on the measured signal strength (0 for no signal to 2 for strong signal) for each biological signature relative to the total rating possible. The 2005 field experiment results show that percent positive ratings varied significantly across Site D (coastal site with fog), with patchy zones of high abundance correlated with orbital and microscale habitat types (heaved surface crust and gravel bars); alluvial fan habitats generally had lower abundance. Non-random multi-scale biological patchiness also characterized interior desert Sites E and F, with relatively high abundance associated with (paleo)aqueous habitats such as playas. Localized variables, including topography, played an important, albeit complex, role in microbial spatial distribution. Site D biosignature trends correlated with culturable soil bacteria, with MPN ranging from 10-1000 CFU/g-soil, and chlorophyll ratings accurately mapped lichen/moss abundance (Site D) and higher plant (Site F) distributions. Climate also affected biological patchiness, with significant correlation shown between abundance and (rover) air relative humidity, while lichen patterns were linked to the presence of fog. Rover biological mapping results across sites parallel longitudinal W-E wet/dry/wet Atacama climate trends. Overall, the study highlights the success of targeting of aqueousassociated habitats identifiable from orbital geology and mineralogy. The LITA experience also suggests the terrestrial study of life and its distribution, particularly the fields of landscape ecology and ecohydrology, hold critical lessons for the search for life on other planets. Their applications to robotic sampling strategies on Mars should be further exploited.


Journal of Geophysical Research | 2008

Application of pulsed‐excitation fluorescence imager for daylight detection of sparse life in tests in the Atacama Desert

S. Weinstein; D. Pane; Lauren A. Ernst; Kimberley A. Warren-Rhodes; James M. Dohm; Andrew N. Hock; J. L. Piatek; S. Emani; F. Lanni; Michael D. Wagner; Gregory W. Fisher; Edwin Minkley; L. E. Dansey; Trey Smith; Edmond A. Grin; K. Stubbs; G. Thomas; Charles S. Cockell; Lucia Marinangeli; Gian Gabriele Ori; Steven D. Heys; James Teza; Jeffrey Edward Moersch; Peter Coppin; G. Chong Diaz; David Wettergreen; Nathalie A. Cabrol; Alan S. Waggoner

A daylight fluorescence imager was deployed on an autonomous rover, Zoe, to detect life on the surface and shallow subsurface in regions of the Atacama Desert in Chile during field tests between 2003 and 2005. In situ fluorescent measurements were acquired from naturally fluorescing biomolecules such as chlorophyll and from specific fluorescent probes sprayed on the samples, targeting each of the four biological macromolecule classes: DNA, protein, lipid, and carbohydrate. RGB context images were also acquired. Preparatory reagents were applied to enhance the dye probe penetration and fluorescence intensity of chlorophyll. Fluorescence imager data sets from 257 samples were returned to the Life in the Atacama science team. A variety of visible life forms, such as lichens, were detected, and several of the dye probes produced signals from nonphotosynthetic microorganisms.


Journal of Geophysical Research | 2007

Ecology and spatial pattern of cyanobacterial community island patches in the Atacama Desert, Chile

Kimberley A. Warren-Rhodes; Jennifer L. Dungan; J. L. Piatek; K. Stubbs; Benito Gómez-Silva; Yong Chen; Christopher P. McKay


Journal of Geophysical Research | 2007

Searching for microbial life remotely: Satellite‐to‐rover habitat mapping in the Atacama Desert, Chile

Kimberley A. Warren-Rhodes; S. Weinstein; James M. Dohm; J. L. Piatek; Edwin Minkley; Andrew N. Hock; Charles S. Cockell; D. Pane; Lauren A. Ernst; G. Fisher; S. Emani; Alan S. Waggoner; Nathalie A. Cabrol; David Wettergreen; Dimitrios Apostolopoulos; Peter Coppin; Edmond A. Grin; Chong Diaz; Jeffrey Edward Moersch; G. G. Oril; Trey Smith; K. Stubbs; Gordon Thomas; Michael D. Wagner; M. Wyatt


Journal of Geophysical Research | 2007

Ecology and spatial pattern of cyanobacterial community island patches in the Atacama Desert, Chile: RARE CYANOBACTERIAL PATCHES IN ATACAMA

Kimberley A. Warren-Rhodes; Jennifer L. Dungan; J. L. Piatek; K. Stubbs; Benito Gómez-Silva; Yong Chen; Christopher P. McKay


Archive | 2005

Searching for life with rovers: exploration methods and science results from the 2004 field campaign of the “Life in the Atacama” project and applications to future Mars Missions

Nathalie A. Cabrol; D. S. Wettergree; R. Whittaker; Edmond A. Grin; Jeffrey Edward Moersch; G. Chong-Diaz; Charles S. Cockell; Peter Coppin; James M. Dohm; G. Fisher; Andrew N. Hock; Lucia Marinangeli; N. Minkley; Gian Gabriele Ori; J. L. Piatek; Alan S. Waggoner; Kimberley A. Warren-Rhodes; S. Weinstein; Michael Bruce Wyatt; Francisco J. Calderon; Stuart Heys; Dominic Jonak; A. Luders; T. Pane; Trey Smith; K. Stubbs; James Teza; P. Thompkins; Daniel J. Villa; C. Willams


Journal of Geophysical Research | 2008

Application of pulsed-excitation fluorescence imager for daylight detection of sparse life in tests in the Atacama Desert: IMAGER FOR LIFE DETECTION IN ATACAMA

S. Weinstein; D. Pane; Lauren A. Ernst; Kimberley A. Warren-Rhodes; James M. Dohm; Andrew N. Hock; J. L. Piatek; S. Emani; F. Lanni; Michael D. Wagner; Gregory W. Fisher; Edwin Minkley; L. E. Dansey; Trey Smith; Edmond A. Grin; K. Stubbs; G. Thomas; Charles S. Cockell; Lucia Marinangeli; Gian Gabriele Ori; Steven D. Heys; James Teza; Jeffrey Edward Moersch; Peter Coppin; G. Chong Diaz; David Wettergreen; Nathalie A. Cabrol; Alan S. Waggoner


Journal of Geophysical Research | 2007

Searching for microbial life remotely: Satellite-to-rover habitat mapping in the Atacama Desert, Chile: ROVER HABITAT MAPPING IN THE ATACAMA

Kimberley A. Warren-Rhodes; S. Weinstein; James M. Dohm; J. L. Piatek; Edwin Minkley; Andrew N. Hock; Charles S. Cockell; D. Pane; Lauren A. Ernst; G. Fisher; S. Emani; Alan S. Waggoner; Nathalie A. Cabrol; David Wettergreen; Dimitrios Apostolopoulos; Peter Coppin; Edmond A. Grin; Chong Diaz; Jeffrey Edward Moersch; G. G. Oril; Trey Smith; K. Stubbs; G. Thomas; Michael D. Wagner; M. Wyatt


Journal of Geophysical Research | 2007

Robotic ecological mapping: Habitats and the search for life in the Atacama Desert: ROBOTIC ECOLOGICAL MAPPING IN ATACAMA

Kimberley A. Warren-Rhodes; S. Weinstein; J. L. Piatek; James M. Dohm; Andrew N. Hock; Edwin Minkley; D. Pane; Lauren A. Ernst; G. Fisher; S. Emani; Alan S. Waggoner; Nathalie A. Cabrol; David Wettergreen; Edmond A. Grin; Peter Coppin; Chong Diaz; Jeffrey Edward Moersch; G. G. Oril; Trey Smith; K. Stubbs; G. Thomas; Michael D. Wagner; M. Wyatt; L. Ng Boyle


Archive | 2005

Searching for Life with Rovers: Exploration Methods & Science Results from the 2004 Field Campaign of the

Nathalie A. Cabrol; David Wettergreen; R. Whittaker; Edmond A. Grin; Jeffrey Edward Moersch; G. Chong-Diaz; Charles S. Cockell; Pol Coppin; James M. Dohm; G. Fisher; Andrew N. Hock; Lucia Marinangeli; N. Minkley; G. G. Ori; J. L. Piatek; Alan S. Waggoner; Kimberley A. Warren-Rhodes; Scott Weinstein; Michael Bruce Wyatt; Dimi Apostolopoulos; T. P. Smith; Martin Wagner; K. Stubbs; G. Thomas; Justin M. Glasgow

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Alan S. Waggoner

Carnegie Mellon University

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J. L. Piatek

University of Tennessee

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Andrew N. Hock

University of California

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David Wettergreen

Carnegie Mellon University

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D. Pane

Carnegie Mellon University

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G. Fisher

Carnegie Mellon University

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