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Dive into the research topics where Kaisa Nieminen is active.

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Featured researches published by Kaisa Nieminen.


Proceedings of the National Academy of Sciences of the United States of America | 2008

Cytokinin signaling regulates cambial development in poplar

Kaisa Nieminen; Juha Immanen; Marjukka Laxell; Leila Kauppinen; Petr Tarkowski; Karel Dolezal; Sari Tähtiharju; Annakaisa Elo; Mélanie Decourteix; Karin Ljung; Rishikesh P. Bhalerao; Kaija Keinonen; Victor A. Albert; Ykä Helariutta

Although a substantial proportion of plant biomass originates from the activity of vascular cambium, the molecular basis of radial plant growth is still largely unknown. To address whether cytokinins are required for cambial activity, we studied cytokinin signaling across the cambial zones of 2 tree species, poplar (Populus trichocarpa) and birch (Betula pendula). We observed an expression peak for genes encoding cytokinin receptors in the dividing cambial cells. We reduced cytokinin levels endogenously by engineering transgenic poplar trees (P. tremula × tremuloides) to express a cytokinin catabolic gene, Arabidopsis CYTOKININ OXIDASE 2, under the promoter of a birch CYTOKININ RECEPTOR 1 gene. Transgenic trees showed reduced concentration of a biologically active cytokinin, correlating with impaired cytokinin responsiveness. In these trees, both apical and radial growth was compromised. However, radial growth was more affected, as illustrated by a thinner stem diameter than in WT at same height. To dissect radial from apical growth inhibition, we performed a reciprocal grafting experiment. WT scion outgrew the diameter of transgenic stock, implicating cytokinin activity as a direct determinant of radial growth. The reduced radial growth correlated with a reduced number of cambial cell layers. Moreover, expression of a cytokinin primary response gene was dramatically reduced in the thin-stemmed transgenic trees. Thus, a reduced level of cytokinin signaling is the primary basis for the impaired cambial growth observed. Together, our results show that cytokinins are major hormonal regulators required for cambial development.


The Plant Cell | 2011

Mobile Gibberellin Directly Stimulates Arabidopsis Hypocotyl Xylem Expansion

Laura Ragni; Kaisa Nieminen; David Pacheco-Villalobos; Richard Sibout; Claus Schwechheimer; Christian S. Hardtke

In this study, the authors find that the expansion of the xylem in Arabidopsis hypocotyls observed upon flowering is directly triggered by signaling through the plant hormone gibberellin. The authors also demonstrate that this involves mobile gibberellin, which therefore can act as a long-distance signal. Secondary growth of the vasculature results in the thickening of plant structures and continuously produces xylem tissue, the major biological carbon sink. Little is known about the developmental control of this quantitative trait, which displays two distinct phases in Arabidopsis thaliana hypocotyls. The later phase of accelerated xylem expansion resembles the secondary growth of trees and is triggered upon flowering by an unknown, shoot-derived signal. We found that flowering-dependent hypocotyl xylem expansion is a general feature of herbaceous plants with a rosette growth habit. Flowering induction is sufficient to trigger xylem expansion in Arabidopsis. By contrast, neither flower formation nor elongation of the main inflorescence is required. Xylem expansion also does not depend on any particular flowering time pathway or absolute age. Through analyses of natural genetic variation, we found that ERECTA acts locally to restrict xylem expansion downstream of the gibberellin (GA) pathway. Investigations of mutant and transgenic plants indicate that GA and its signaling pathway are both necessary and sufficient to directly trigger enhanced xylogenesis. Impaired GA signaling did not affect xylem expansion systemically, suggesting that it acts downstream of the mobile cue. By contrast, the GA effect was graft transmissible, suggesting that GA itself is the mobile shoot-derived signal.


Plant Physiology | 2004

A Weed for Wood? Arabidopsis as a Genetic Model for Xylem Development

Kaisa Nieminen; Leila Kauppinen; Ykä Helariutta

Wood, or secondary xylem, is a water-conductive and supportive vascular tissue highly characteristic of trees. In addition to parenchymatous cells adapted for storage and transport functions, wood is mainly composed of various vertically elongated cell types. These are classified either as tracheary


The Plant Cell | 2014

Strigolactone Promotes Degradation of DWARF14, an α/β Hydrolase Essential for Strigolactone Signaling in Arabidopsis

Florian Chevalier; Kaisa Nieminen; Juan C. Sánchez-Ferrero; María Luisa Rodríguez; Mónica Chagoyen; Christian S. Hardtke; Pilar Cubas

A mechanism was identified by which degradation of D14, the putative receptor of the plant hormone strigolactone, is promoted by this hormone. This mechanism, which is mediated by protein degradation via the proteasome machinery and requires the activity of the F-box protein MAX2, should cause a substantial drop in strigolactone perception, thereby limiting hormone signaling duration and intensity. Strigolactones (SLs) are phytohormones that play a central role in regulating shoot branching. SL perception and signaling involves the F-box protein MAX2 and the hydrolase DWARF14 (D14), proposed to act as an SL receptor. We used strong loss-of-function alleles of the Arabidopsis thaliana D14 gene to characterize D14 function from early axillary bud development through to lateral shoot outgrowth and demonstrated a role of this gene in the control of flowering time. Our data show that D14 distribution in vivo overlaps with that reported for MAX2 at both the tissue and subcellular levels, allowing physical interactions between these proteins. Our grafting studies indicate that neither D14 mRNA nor the protein move over a long range upwards in the plant. Like MAX2, D14 is required locally in the aerial part of the plant to suppress shoot branching. We also identified a mechanism of SL-induced, MAX2-dependent proteasome-mediated degradation of D14. This negative feedback loop would cause a substantial drop in SL perception, which would effectively limit SL signaling duration and intensity.


Seminars in Cell & Developmental Biology | 2009

Stem cell function during plant vascular development.

Annakaisa Elo; Juha Immanen; Kaisa Nieminen; Ykä Helariutta

While many regulatory mechanisms controlling the development and function of root and shoot apical meristems have been revealed, our knowledge of similar processes in lateral meristems, including the vascular cambium, is still limited. Our understanding of even the anatomy and development of lateral meristems (procambium or vascular cambium) is still relatively incomplete, let alone their genetic regulation. Research into this particular tissue type has been mostly hindered by a lack of suitable molecular markers, as well as the fact that thus far very few mutants affecting plant secondary development have been described. The development of suitable molecular markers is a high priority in order to help define the anatomy, especially the location and identity of cambial stem cells and the developmental phases and molecular regulatory mechanisms of the cambial zone. To date, most of the advances have been obtained by studying the role of the major plant hormones in vascular development. Thus far auxin, cytokinin, gibberellin and ethylene have been implicated in regulating the maintenance and activity of cambial stem cells; the most logical question in research would be how these hormones interact during the various phases of cambial development.


The Arabidopsis Book | 2015

Vascular Cambium Development

Kaisa Nieminen; Tiina Blomster; Ykä Helariutta; Ari Pekka Mähönen

Secondary phloem and xylem tissues are produced through the activity of vascular cambium, the cylindrical secondary meristem which arises among the primary plant tissues. Most dicotyledonous species undergo secondary development, among them Arabidopsis. Despite its small size and herbaceous nature, Arabidopsis displays prominent secondary growth in several organs, including the root, hypocotyl and shoot. Together with the vast genetic resources and molecular research methods available for it, this has made Arabidopsis a versatile and accessible model organism for studying cambial development and wood formation. In this review, we discuss and compare the development and function of the vascular cambium in the Arabidopsis root, hypocotyl, and shoot. We describe the current understanding of the molecular regulation of vascular cambium and compare it to the function of primary meristems. We conclude with a look at the future prospects of cambium research, including opportunities provided by phenotyping and modelling approaches, complemented by studies of natural variation and comparative genetic studies in perennial and woody plant species.


Current Opinion in Plant Biology | 2014

The formation of wood and its control

Jing Zhang; Kaisa Nieminen; Juan Antonio Alonso Serra; Yrjö Helariutta

Wood continues to increase in importance as a sustainable source of energy and shelter. Wood formation is a dynamic process derived from plant secondary (radial) growth. Several experimental systems have been employed to study wood formation and its regulation. The use of genetic manipulation approaches and genome-wide analyses in model plants have significantly advanced our understanding of wood formation. In this review, we provide an update of our knowledge of the genetic and hormonal regulation of wood formation based on research in different plants systems, as well as considering the subject from an evo-devo perspective.


Physiologia Plantarum | 2013

Genetic and hormonal regulation of cambial development

Robertas Ursache; Kaisa Nieminen; Ykä Helariutta

The stems and roots of most dicot plants increase in diameter by radial growth, due to the activity of secondary meristems. Two types of meristems function in secondary plant body formation: the vascular cambium, which gives rise to secondary xylem and phloem, and the cork cambium, which produces a bark layer that replaces the epidermis and protects the plant stem from mechanical damage and pathogens. Cambial development, the initiation and activity of the vascular cambium, leads to an accumulation of wood, the secondary xylem tissue. The thick, cellulose-rich cell walls of wood provide a source of cellulose and have the potential to be used as a raw material for sustainable and renewable energy production. In this review, we will discuss what is known about the mechanisms regulating the cambium and secondary tissue development.


Archive | 2010

Wood Formation in Populus

Andrew Groover; Kaisa Nieminen; Ykä Helariutta; Shawn D. Mansfield

Developmental genetic, genomic and biochemical approaches in Populus are providing new insights into the molecular and genetic mechanisms regulating wood formation. We discuss here wood properties, new approaches for the study of wood formation, and the genes and hormones responsible for regulating wood formation in Populus.


Nature Genetics | 2017

Genome sequencing and population genomic analyses provide insights into the adaptive landscape of silver birch

Jarkko Salojärvi; Olli Pekka Smolander; Kaisa Nieminen; Sitaram Rajaraman; Omid Safronov; Pezhman Safdari; Airi Lamminmäki; Juha Immanen; Tianying Lan; Jaakko Tanskanen; Pasi Rastas; Ali Amiryousefi; Balamuralikrishna Jayaprakash; Juhana Kammonen; Risto Hagqvist; Gugan Eswaran; Viivi Ahonen; Juan Antonio Alonso Serra; Fred O. Asiegbu; Juan de Dios Barajas-Lopez; Daniel Blande; Olga Blokhina; Tiina Blomster; Suvi K. Broholm; Mikael Brosché; Fuqiang Cui; Chris Dardick; Sanna Ehonen; Paula Elomaa; Sacha Escamez

Silver birch (Betula pendula) is a pioneer boreal tree that can be induced to flower within 1 year. Its rapid life cycle, small (440-Mb) genome, and advanced germplasm resources make birch an attractive model for forest biotechnology. We assembled and chromosomally anchored the nuclear genome of an inbred B. pendula individual. Gene duplicates from the paleohexaploid event were enriched for transcriptional regulation, whereas tandem duplicates were overrepresented by environmental responses. Population resequencing of 80 individuals showed effective population size crashes at major points of climatic upheaval. Selective sweeps were enriched among polyploid duplicates encoding key developmental and physiological triggering functions, suggesting that local adaptation has tuned the timing of and cross-talk between fundamental plant processes. Variation around the tightly-linked light response genes PHYC and FRS10 correlated with latitude and longitude and temperature, and with precipitation for PHYC. Similar associations characterized the growth-promoting cytokinin response regulator ARR1, and the wood development genes KAK and MED5A.

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Jing Zhang

University of Helsinki

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Laura Ragni

University of Lausanne

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