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Featured researches published by Karen Yu.


Atmospheric Chemistry and Physics | 2016

Why do models overestimate surface ozone in the Southeast United States

Katherine R. Travis; Daniel J. Jacob; Jenny A. Fisher; Patrick S. Kim; Eloise A. Marais; Lei Zhu; Karen Yu; Christopher Miller; Robert M. Yantosca; Melissa P. Sulprizio; Anne M. Thompson; Paul O. Wennberg; John D. Crounse; Jason M. St. Clair; R. C. Cohen; Joshua L. Laughner; Jack E. Dibb; Samuel R. Hall; Kirk Ullmann; G. M. Wolfe; I. B. Pollack; J. Peischl; J. A. Neuman; X. Zhou

Ozone pollution in the Southeast US involves complex chemistry driven by emissions of anthropogenic nitrogen oxide radicals (NOx ≡ NO + NO2) and biogenic isoprene. Model estimates of surface ozone concentrations tend to be biased high in the region and this is of concern for designing effective emission control strategies to meet air quality standards. We use detailed chemical observations from the SEAC4RS aircraft campaign in August and September 2013, interpreted with the GEOS-Chem chemical transport model at 0.25°×0.3125° horizontal resolution, to better understand the factors controlling surface ozone in the Southeast US. We find that the National Emission Inventory (NEI) for NOx from the US Environmental Protection Agency (EPA) is too high. This finding is based on SEAC4RS observations of NOx and its oxidation products, surface network observations of nitrate wet deposition fluxes, and OMI satellite observations of tropospheric NO2 columns. Our results indicate that NEI NOx emissions from mobile and industrial sources must be reduced by 30-60%, dependent on the assumption of the contribution by soil NOx emissions. Upper tropospheric NO2 from lightning makes a large contribution to satellite observations of tropospheric NO2 that must be accounted for when using these data to estimate surface NOx emissions. We find that only half of isoprene oxidation proceeds by the high-NOx pathway to produce ozone; this fraction is only moderately sensitive to changes in NOx emissions because isoprene and NOx emissions are spatially segregated. GEOS-Chem with reduced NOx emissions provides an unbiased simulation of ozone observations from the aircraft, and reproduces the observed ozone production efficiency in the boundary layer as derived from a regression of ozone and NOx oxidation products. However, the model is still biased high by 8±13 ppb relative to observed surface ozone in the Southeast US. Ozonesondes launched during midday hours show a 7 ppb ozone decrease from 1.5 km to the surface that GEOS-Chem does not capture. This bias may reflect a combination of excessive vertical mixing and net ozone production in the model boundary layer.


Atmospheric Chemistry and Physics | 2016

Organic nitrate chemistry and its implications for nitrogen budgets in an isoprene- and monoterpene-rich atmosphere: constraints from aircraft (SEAC 4 RS) and ground-based (SOAS) observations in the Southeast US

Jenny A. Fisher; Daniel J. Jacob; Katherine R. Travis; Patrick S. Kim; Eloise A. Marais; Christopher Miller; Karen Yu; Lei Zhu; Robert M. Yantosca; Melissa P. Sulprizio; Jingqiu Mao; Paul O. Wennberg; John D. Crounse; Alex P. Teng; Tran B. Nguyen; Jason M. St. Clair; R. C. Cohen; Paul M. Romer; Benjamin A. Nault; P. J. Wooldridge; Jose L. Jimenez; Pedro Campuzano-Jost; Douglas A. Day; Weiwei Hu; Paul B. Shepson; Fulizi Xiong; D. R. Blake; Allen H. Goldstein; Pawel K. Misztal; T. F. Hanisco

Formation of organic nitrates (RONO2) during oxidation of biogenic volatile organic compounds (BVOCs: isoprene, monoterpenes) is a significant loss pathway for atmospheric nitrogen oxide radicals (NOx), but the chemistry of RONO2 formation and degradation remains uncertain. Here we implement a new BVOC oxidation mechanism (including updated isoprene chemistry, new monoterpene chemistry, and particle uptake of RONO2) in the GEOS-Chem global chemical transport model with ∼25 × 25 km2 resolution over North America. We evaluate the model using aircraft (SEAC4RS) and ground-based (SOAS) observations of NOx, BVOCs, and RONO2 from the Southeast US in summer 2013. The updated simulation successfully reproduces the concentrations of individual gas- and particle-phase RONO2 species measured during the campaigns. Gas-phase isoprene nitrates account for 25-50% of observed RONO2 in surface air, and we find that another 10% is contributed by gas-phase monoterpene nitrates. Observations in the free troposphere show an important contribution from long-lived nitrates derived from anthropogenic VOCs. During both campaigns, at least 10% of observed boundary layer RONO2 were in the particle phase. We find that aerosol uptake followed by hydrolysis to HNO3 accounts for 60% of simulated gas-phase RONO2 loss in the boundary layer. Other losses are 20% by photolysis to recycle NOx and 15% by dry deposition. RONO2 production accounts for 20% of the net regional NOx sink in the Southeast US in summer, limited by the spatial segregation between BVOC and NOx emissions. This segregation implies that RONO2 production will remain a minor sink for NOx in the Southeast US in the future even as NOx emissions continue to decline.


Atmospheric Chemistry and Physics | 2016

Observing atmospheric formaldehyde (HCHO) from space: validation and intercomparison of six retrievals from four satellites (OMI, GOME2A, GOME2B, OMPS) with SEAC4RS aircraft observations over the southeast US

Lei Zhu; Daniel J. Jacob; Patrick S. Kim; Jenny A. Fisher; Karen Yu; Katherine R. Travis; Loretta J. Mickley; Robert M. Yantosca; Melissa P. Sulprizio; Isabelle De Smedt; Gonzalo González Abad; Kelly Chance; Can Li; Richard A. Ferrare; Alan Fried; Johnathan W. Hair; T. F. Hanisco; Dirk Richter; Amy Jo Scarino; James G. Walega; Petter Weibring; G. M. Wolfe

Formaldehyde (HCHO) column data from satellites are widely used as a proxy for emissions of volatile organic compounds (VOCs) but validation of the data has been extremely limited. Here we use highly accurate HCHO aircraft observations from the NASA SEAC4RS campaign over the Southeast US in August-September 2013 to validate and intercompare six retrievals of HCHO columns from four different satellite instruments (OMI, GOME2A, GOME2B and OMPS) and three different research groups. The GEOS-Chem chemical transport model is used as a common intercomparison platform. All retrievals feature a HCHO maximum over Arkansas and Louisiana, consistent with the aircraft observations and reflecting high emissions of biogenic isoprene. The retrievals are also interconsistent in their spatial variability over the Southeast US (r=0.4-0.8 on a 0.5°×0.5° grid) and in their day-to-day variability (r=0.5-0.8). However, all retrievals are biased low in the mean by 20-51%, which would lead to corresponding bias in estimates of isoprene emissions from the satellite data. The smallest bias is for OMI-BIRA, which has high corrected slant columns relative to the other retrievals and low scattering weights in its air mass factor (AMF) calculation. OMI-BIRA has systematic error in its assumed vertical HCHO shape profiles for the AMF calculation and correcting this would eliminate its bias relative to the SEAC4RS data. Our results support the use of satellite HCHO data as a quantitative proxy for isoprene emission after correction of the low mean bias. There is no evident pattern in the bias, suggesting that a uniform correction factor may be applied to the data until better understanding is achieved.


Geoscientific Model Development | 2018

Errors and improvements in the use of archived meteorological data for chemical transport modeling: an analysis using GEOS-Chem v11-01 driven by GEOS-5 meteorology

Karen Yu; Christoph A. Keller; Daniel J. Jacob; Andrea Molod; Sebastian D. Eastham; Michael S. Long

Global simulations of atmospheric chemistry are commonly conducted with off-line chemical transport models (CTMs) driven by archived meteorological data from general circulation models (GCMs). The off-line approach has advantages of simplicity and expediency, but incurs errors due to temporal averaging in the meteorological archive and the inability to reproduce the GCM transport algorithms exactly. The CTM simulation is also often conducted at coarser grid resolution than the parent GCM. Here we investigate this cascade of CTM errors by using 222Rn-210Pb-7Be chemical tracer simulations offline in the GEOS-Chem CTM at rectilinear 0.25° ×0.3125° (≈25 km) and 2° ×2.5° (≈200 km) resolutions, and on-line in the parent GEOS-5 GCM at cubed-sphere c360 (≈25 km) and c48 (≈200 km) horizontal resolutions. The c360 GEOS-5 GCM meteorological archive, updated every 3 hours and remapped to 0.25° ×0.3125°, is the standard operational product generated by the NASA Global Modeling and Assimilation Office (GMAO) and used as input by GEOS-Chem. We find that the GEOS-Chem 222Rn simulation at native 0.25° ×0.3125° resolution is affected by vertical transport errors of up to 20% relative to the GEOS-5 c360 on-line simulation, in part due to loss of transient organized vertical motions in the GCM (resolved convection) that are temporally averaged out in the 3-hour meteorological archive. There is also significant error caused by operational remapping of the meteorological archive from cubed-sphere to rectilinear grid. Decreasing the GEOS-Chem resolution from 0.25°×0.3125° to 2°×2.5° induces further weakening of vertical transport as transient vertical motions are averaged out spatially as well as temporally. The resulting 222Rn concentrations simulated by the coarse-resolution GEOS-Chem are overestimated by up to 40% in surface air relative to the on-line c360 simulations, and underestimated by up to 40% in the upper troposphere, while the tropospheric lifetimes of 210Pb and 7Be against aerosol deposition are affected by 5-10%. The lost vertical transport in the coarse-resolution GEOS-Chem simulation can be partly restored by re-computing the convective mass fluxes at the appropriate resolution to replace the archived convective mass fluxes, and by correcting for bias 20 in spatial averaging of boundary layer mixing depths.


Atmospheric Chemistry and Physics | 2015

Sources, seasonality, and trends of southeast US aerosol: an integrated analysis of surface, aircraft, and satellite observations with the GEOS-Chem chemical transport model

Patrick S. Kim; Daniel J. Jacob; Jenny A. Fisher; Katherine R. Travis; Karen Yu; Lei Zhu; Robert M. Yantosca; Melissa P. Sulprizio; Jose L. Jimenez; Pedro Campuzano-Jost; Karl D. Froyd; Jin Liao; J. W. Hair; Marta A. Fenn; Carolyn Butler; N. L. Wagner; T D Gordon; André Welti; Paul O. Wennberg; John D. Crounse; J. M. St. Clair; Alexander P. Teng; Dylan B. Millet; Joshua P. Schwarz; M. Z. Markovic; A. E. Perring


Atmospheric Chemistry and Physics | 2016

Aqueous-phase mechanism for secondary organic aerosol formation from isoprene: application to the southeast United States and co-benefit of SO 2 emission controls

Eloise A. Marais; Daniel J. Jacob; Jose L. Jimenez; Pedro Campuzano-Jost; Douglas A. Day; Weiwei Hu; Jordan E. Krechmer; Lei Zhu; Patrick S. Kim; Christopher Miller; Jenny A. Fisher; Katherine R. Travis; Karen Yu; T. F. Hanisco; G. M. Wolfe; H. L. Arkinson; Havala O. T. Pye; Karl D. Froyd; Jin Liao; V. F. McNeill


Atmospheric Chemistry and Physics | 2016

NO x emissions, isoprene oxidation pathways, vertical mixing, and implications for surface ozone in the Southeast United States

Katherine R. Travis; Daniel J. Jacob; Jenny A. Fisher; Patrick S. Kim; Eloise A. Marais; Lei Zhu; Karen Yu; Christopher Miller; Robert M. Yantosca; Melissa P. Sulprizio; Anne M. Thompson; Paul O. Wennberg; John D. Crounse; Jason M. St. Clair; R. C. Cohen; Joshua L. Laugher; Jack E. Dibb; Samuel R. Hall; Kirk Ullmann; Glenn M. Wolfe; I. B. Pollack; J. Peischl; J. A. Neuman; X. Zhou


Atmospheric Chemistry and Physics | 2016

Sensitivity to grid resolution in the ability of a chemical transport model to simulate observed oxidant chemistry under high-isoprene conditions

Karen Yu; Daniel J. Jacob; Jenny A. Fisher; Patrick S. Kim; Eloise A. Marais; Christopher Miller; Katherine R. Travis; Lei Zhu; Robert M. Yantosca; Melissa P. Sulprizio; R. C. Cohen; Jack E. Dibb; Alan Fried; Tomas Mikoviny; Thomas B. Ryerson; Paul O. Wennberg; Armin Wisthaler


Atmospheric Environment | 2014

Anthropogenic emissions in Nigeria and implications for atmospheric ozone pollution: A view from space

Eloise A. Marais; Daniel J. Jacob; Kevin James Wecht; Christophe Lerot; Liangran Zhang; Karen Yu; Thomas P. Kurosu; Kelly Chance; Bastien Sauvage


Atmospheric Chemistry and Physics | 2016

Glyoxal yield from isoprene oxidation and relation to formaldehyde: chemical mechanism, constraints from SENEX aircraft observations, and interpretation of OMI satellite data

Christopher Miller; Daniel J. Jacob; Eloise A. Marais; Karen Yu; Katherine R. Travis; Patrick S. Kim; Jenny A. Fisher; Lei Zhu; Glenn M. Wolfe; T. F. Hanisco; Frank N. Keutsch; Jennifer Kaiser; Kyung-Eun Min; Steven S. Brown; Rebecca A. Washenfelder; Gonzalo González Abad; Kelly Chance

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Paul O. Wennberg

California Institute of Technology

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