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Featured researches published by Kate Baumann.


Journal of Proteomics | 2013

Proteomic comparison of Hypnale hypnale (Hump-Nosed Pit-Viper) and Calloselasma rhodostoma (Malayan Pit-Viper) venoms

Syed A. Ali; Kate Baumann; Timothy N. W. Jackson; Kelly Wood; Steven R. Mason; Eivind A. B. Undheim; Amanda Nouwens; Ivan Koludarov; Iwan Hendrikx; Alun Jones; Bryan G. Fry

UNLABELLED Treatment of Hypnale hypnale bites with commercial antivenoms, even those raised against its sister taxon Calloselasma rhodostoma, has never been clinically successful. As these two genera have been separated for 20million years, we tested to see whether significant variations in venom had accumulated during this long period of evolutionary divergence, and thus could be responsible for the failure of antivenom. Proteomic analyses of C. rhodostoma and H. hypnale venom were performed using 1D and 2D PAGE as well as 2D-DIGE. C. rhodostoma venom was diverse containing large amounts of Disintegrin, Kallikrein, l-amino acid oxidase, Lectin, phospholipase A2 (acidic, basic and neutral) and Snake Venom Metalloprotease. In contrast, while H. hypnale also contained a wide range of toxin types, the venom was overwhelmingly dominated by two molecular weight forms of basic PLA2. 2D-DIGE (2-D Fluorescence Difference Gel Electrophoresis analysis) showed that even when a particular toxin class was shared between the two venoms, there were significant molecular weights or isoelectric point differences. This proteomic difference explains the past treatment failures with C. rhodostoma antivenom and highlights the need for a H. hypnale specific antivenom. BIOLOGICAL SIGNIFICANCE These results have direct implications for the treatment of envenomed patients in Sri Lanka. The unusual venom profile of Hypnale hypnale underscores the biodiscovery potential of novel snake venoms.


Journal of Proteomics | 2014

A ray of venom: Combined proteomic and transcriptomic investigation of fish venom composition using barb tissue from the blue-spotted stingray (Neotrygon kuhlii)

Kate Baumann; Nicholas R. Casewell; Syed A. Ali; Timothy N. W. Jackson; Irina Vetter; James Dobson; Scott C. Cutmore; Amanda Nouwens; Vincent Lavergne; Bryan G. Fry

UNLABELLED Fish venoms remain almost completely unstudied despite the large number of species. In part this is due to the inherent nature of fish venoms, in that they are highly sensitive to heat, pH, lyophilisation, storage and repeated freeze-thawing. They are also heavily contaminated with mucus, which makes proteomic study difficult. Here we describe a novel protein-handling protocol to remove mucus contamination, utilising ammonium sulphate and acetone precipitation. We validated this approach using barb venom gland tissue protein extract from the blue-spotted stingray Neotrygon kuhlii. We analysed the protein extract using 1D and 2D gels with LC-MS/MS sequencing. Protein annotation was underpinned by a venom gland transcriptome. The composition of our N. kuhlii venom sample revealed a variety of protein types that are completely novel to animal venom systems. Notably, none of the detected proteins exhibited similarity to the few toxin components previously characterised from fish venoms, including those found in other stingrays. Putative venom toxins identified here included cystatin, peroxiredoxin and galectin. Our study represents the first combined survey of gene and protein composition from the venom apparatus of any fish and our novel protein handling method will aid the future characterisation of toxins from other unstudied venomous fish lineages. BIOLOGICAL SIGNIFICANCE These results show an efficient manner for removing mucus from fish venoms. These results are the first insights into the evolution of proteins present on stingrayvenom barbs.


Current Biology | 2017

The Evolution of Fangs, Venom, and Mimicry Systems in Blenny Fishes

Nicholas R. Casewell; Jeroen C. Visser; Kate Baumann; James Dobson; Han Han; Sanjaya Kuruppu; Michael Morgan; Anthony Romilio; Vera Weisbecker; Karine Mardon; Syed A. Ali; Jordan Debono; Ivan Koludarov; Ivo Que; Gavan M. Cooke; Amanda Nouwens; Wayne C. Hodgson; Simon C. Wagstaff; Karen L. Cheney; Irina Vetter; Louise van der Weerd; Michael K. Richardson; Bryan G. Fry

Venom systems have evolved on multiple occasions across the animal kingdom, and they can act as key adaptations to protect animals from predators [1]. Consequently, venomous animals serve as models for a rich source of mimicry types, as non-venomous species benefit from reductions in predation risk by mimicking the coloration, body shape, and/or movement of toxic counterparts [2-5]. The frequent evolution of such deceitful imitations provides notable examples of phenotypic convergence and are often invoked as classic exemplars of evolution by natural selection. Here, we investigate the evolution of fangs, venom, and mimetic relationships in reef fishes from the tribe Nemophini (fangblennies). Comparative morphological analyses reveal that enlarged canine teeth (fangs) originated at the base of the Nemophini radiation and have enabled a micropredatory feeding strategy in non-venomous Plagiotremus spp. Subsequently, the evolution of deep anterior grooves and their coupling to venom secretory tissue provide Meiacanthus spp. with toxic venom that they effectively employ for defense. We find that fangblenny venom contains a number of toxic components that have been independently recruited into other animal venoms, some of which cause toxicity via interactions with opioid receptors, and result in a multifunctional biochemical phenotype that exerts potent hypotensive effects. The evolution of fangblenny venom has seemingly led to phenotypic convergence via the formation of a diverse array of mimetic relationships that provide protective (Batesian mimicry) and predatory (aggressive mimicry) benefits to other fishes [2, 6]. Our results further our understanding of how novel morphological and biochemical adaptations stimulate ecological interactions in the natural world.


Journal of Proteomics | 2015

Extreme venom variation in Middle Eastern vipers: A proteomics comparison of Eristicophis macmahonii, Pseudocerastes fieldi and Pseudocerastes persicus

Syed A. Ali; Timothy N. W. Jackson; Nicholas R. Casewell; Dolyce H.W. Low; Sarah Rossi; Kate Baumann; Behzad Fathinia; Jeroen C. Visser; Amanda Nouwens; Iwan Hendrikx; Alun Jones; Eivind Ab Undheim; Bryan G. Fry

UNLABELLED Venoms of the viperid sister genera Eristicophis and Pseudocerastes are poorly studied despite their anecdotal reputation for producing severe or even lethal envenomations. This is due in part to the remote and politically unstable regions that they occupy. All species contained are sit and wait ambush feeders. Thus, this study examined their venoms through proteomics techniques in order to establish if this feeding ecology, and putatively low levels of gene flow, have resulted in significant variations in venom profile. The techniques indeed revealed extreme venom variation. This has immediate implications as only one antivenom is made (using the venom of Pseudocerastes persicus) yet the proteomic variation suggests that it would be of only limited use for the other species, even the sister species Pseudocerastes fieldi. The high degree of variation however also points toward these species being rich resources for novel compounds which may have use as lead molecules in drug design and development. BIOLOGICAL SIGNIFICANCE These results show extreme venom variation between these closely related snakes. These results have direct implications for the treatment of the envenomed patient.


Comparative Biochemistry and Physiology C-toxicology & Pharmacology | 2017

Rattling the border wall: Pathophysiological implications of functional and proteomic venom variation between Mexican and US subspecies of the desert rattlesnake Crotalus scutulatus

James Dobson; Daryl C. Yang; Bianca op den Brouw; Chip Cochran; Tam Huynh; Sanjaya Kurrupu; Elda E. Sánchez; Daniel J. Massey; Kate Baumann; Timothy N. W. Jackson; Amanda Nouwens; Peter Josh; Edgar Neri-Castro; Alejandro Alagón; Wayne C. Hodgson; Bryan G. Fry

While some US populations of the Mohave rattlesnake (Crotalus scutulatus scutulatus) are infamous for being potently neurotoxic, the Mexican subspecies C. s. salvini (Huamantlan rattlesnake) has been largely unstudied beyond crude lethality testing upon mice. In this study we show that at least some populations of this snake are as potently neurotoxic as its northern cousin. Testing of the Mexican antivenom Antivipmyn showed a complete lack of neutralisation for the neurotoxic effects of C. s. salvini venom, while the neurotoxic effects of the US subspecies C. s. scutulatus were time-delayed but ultimately not eliminated. These results document unrecognised potent neurological effects of a Mexican snake and highlight the medical importance of this subspecies, a finding augmented by the ineffectiveness of the Antivipmyn antivenom. These results also influence our understanding of the venom evolution of Crotalus scutulatus, suggesting that neurotoxicity is the ancestral feature of this species, with the US populations which lack neurotoxicity being derived states.


Toxins | 2016

Canopy Venom: Proteomic Comparison among New World Arboreal Pit-Viper Venoms

Jordan Debono; Chip Cochran; Sanjaya Kuruppu; Amanda Nouwens; Niwanthi W. Rajapakse; Minami Kawasaki; Kelly Wood; James Dobson; Kate Baumann; Mahdokht Jouiaei; Timothy N. W. Jackson; Ivan Koludarov; Dolyce H.W. Low; Syed A. Ali; Angela Smith; Andrew C. Barnes; Bryan G. Fry

Central and South American pitvipers, belonging to the genera Bothrops and Bothriechis, have independently evolved arboreal tendencies. Little is known regarding the composition and activity of their venoms. In order to close this knowledge gap, venom proteomics and toxin activity of species of Bothriechis, and Bothrops (including Bothriopsis) were investigated through established analytical methods. A combination of proteomics and bioactivity techniques was used to demonstrate a similar diversification of venom composition between large and small species within Bothriechis and Bothriopsis. Increasing our understanding of the evolution of complex venom cocktails may facilitate future biodiscoveries.


Marine Drugs | 2017

From Marine Venoms to Drugs: Efficiently Supported by a Combination of Transcriptomics and Proteomics

Bing Xie; Yuang Huang; Kate Baumann; Bryan G. Fry; Qiong Shi

The potential of marine natural products to become new drugs is vast; however, research is still in its infancy. The chemical and biological diversity of marine toxins is immeasurable and as such an extraordinary resource for the discovery of new drugs. With the rapid development of next-generation sequencing (NGS) and liquid chromatography–tandem mass spectrometry (LC-MS/MS), it has been much easier and faster to identify more toxins and predict their functions with bioinformatics pipelines, which pave the way for novel drug developments. Here we provide an overview of related bioinformatics pipelines that have been supported by a combination of transcriptomics and proteomics for identification and function prediction of novel marine toxins.


Toxins | 2017

The Cardiovascular and Neurotoxic Effects of the Venoms of Six Bony and Cartilaginous Fish Species

Han Han; Kate Baumann; Nicholas R. Casewell; Syed Abid Ali; James Dobson; Ivan Koludarov; Jordan Debono; Scott C. Cutmore; Niwanthi W. Rajapakse; Timothy N. W. Jackson; Rob Jones; Wayne C. Hodgson; Bryan G. Fry; Sanjaya Kuruppu

Fish venoms are often poorly studied, in part due to the difficulty in obtaining, extracting, and storing them. In this study, we characterize the cardiovascular and neurotoxic effects of the venoms from the following six species of fish: the cartilaginous stingrays Neotrygon kuhlii and Himantura toshi, and the bony fish Platycephalus fucus, Girella tricuspidata, Mugil cephalus, and Dentex tumifrons. All venoms (10–100 µg/kg, i.v.), except G. tricuspidata and P. fuscus, induced a biphasic response on mean arterial pressure (MAP) in the anesthetised rat. P. fucus venom exhibited a hypotensive response, while venom from G. tricuspidata displayed a single depressor response. All venoms induced cardiovascular collapse at 200 µg/kg, i.v. The in vitro neurotoxic effects of venom were examined using the chick biventer cervicis nerve-muscle (CBCNM) preparation. N. kuhlii, H. toshi, and P. fucus venoms caused concentration-dependent inhibition of indirect twitches in the CBCNM preparation. These three venoms also inhibited responses to exogenous acetylcholine (ACh) and carbachol (CCh), but not potassium chloride (KCl), indicating a post-synaptic mode of action. Venom from G. tricuspidata, M. cephalus, and D. tumifrons had no significant effect on indirect twitches or agonist responses in the CBCNM. Our results demonstrate that envenoming by these species of fish may result in moderate cardiovascular and/or neurotoxic effects. Future studies aimed at identifying the molecules responsible for these effects could uncover potentially novel lead compounds for future pharmaceuticals, in addition to generating new knowledge about the evolutionary relationships between venomous animals.


Current Biology | 2017

Erratum: The Evolution of Fangs, Venom, and Mimicry Systems in Blenny Fishes (Current Biology (2017) 27(8) (1184–191) (S0960982217302695) (10.1016/j.cub.2017.02.067))

Nicholas R. Casewell; Jeroen C. Visser; Kate Baumann; James Dobson; Han Han; Sanjaya Kuruppu; Michael Morgan; Anthony Romilio; Vera Weisbecker; Karine Mardon; Syed A. Ali; Jordan Debono; Ivan Koludarov; Ivo Que; Gavan M. Cooke; Amanda Nouwens; Wayne C. Hodgson; Simon C. Wagstaff; Karen L. Cheney; Irina Vetter; Louise van der Weerd; Michael K. Richardson; Bryan G. Fry

(Current Biology 27, 714–720; March 6, 2017) In this article, we unintentionally omitted to expand on a citation of previously published results. In the caption of Figure 2, we stated that ‘‘F and p values indicate the significance of a phylogenetic ANCOVA testing for intercept differences between humans and other primates (see also Smaers and Rohlf [9], Supplemental Information..., and Table S2 for more detailed results)’’ (p. 716). Wewould like to clarify that in this statement, ‘‘see also Smaers and Rohlf’’ refers, specifically and exclusively, to the phylogenetic ANCOVA of primate prefrontal cortex to primary visual cortex and frontal motor areas using the Smaers dataset in [9]. These results were depicted in a subsection of our Figure 2 (the two top left regression plots) andwere numerically presented in a subsection of our Table S2. Smaers and Rohlf presented these results as an empirical example when describing the least-squares solution of phylogenetic ANCOVA and did not discuss the wider biological implications of these results for primate brain evolution. The presentation of the previous results was discussed openly during the review process of this manuscript. The authors apologize for any confusion this oversight may have caused.


Zoomorphology | 2018

Harden up: metal acquisition in the weaponized ovipositors of aculeate hymenoptera

Kate Baumann; Edward P. Vicenzi; Thomas Lam; Janet G. Douglas; Kevin Arbuckle; Bronwen W. Cribb; Seán G. Brady; Bryan G. Fry

The use of metal ions to harden the tips and edges of ovipositors is known to occur in many hymenopteran species. However, species using the ovipositor for delivery of venom, which occurs in the aculeate hymenoptera (stinging wasps, ants, and bees) remains uninvestigated. In this study, scanning electron microscopy coupled with energy-dispersive X-ray analysis was used to investigate the morphology and metal compositional differences among aculeate aculei. We show that aculeate aculei have a wide diversity of morphological adaptations relating to their lifestyle. We also demonstrate that metals are present in the aculei of all families of aculeate studied. The presence of metals is non-uniform and concentrated in the distal region of the stinger, especially along the longitudinal edges. This study is the first comparative investigation to document metal accumulation in aculeate aculei.

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Bryan G. Fry

Biotechnology Institute

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Amanda Nouwens

University of Queensland

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Nicholas R. Casewell

Liverpool School of Tropical Medicine

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Ivan Koludarov

University of Queensland

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James Dobson

University of Queensland

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Jordan Debono

University of Queensland

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Alun Jones

University of Queensland

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