Katerina Krumova

Bodipy Dyes with Tunable Redox Potentials and Functional Groups for Further Tethering: Preparation, Electrochemical, and Spectroscopic Characterization

The preparation, spectroscopic, and electrochemical characterization of a family of 16 new bodipy dyes with tunable redox potentials and versatile functional groups is reported. Electron-withdrawing or -donating groups (Et, H, Cl, or CN) at positions C2 and C6 enabled tuning the redox potentials within a ca. 0.7 eV window without significantly affecting either the HOMO-LUMO gap or the absorption and emission spectra. Hydroxymethyl or formyl groups at the meso (C8) position in turn provided a handle for covalent tethering to receptors and biomolecules of interest, which dispenses with the more commonly used meso-aryl moiety as a means to tag molecules. The dyes can thus be coupled to both electrophiles and nucleophiles. Importantly, it is shown that meso-formyl bodipy dyes are nonemissive and have significantly lower molar extinction coefficients compared to their meso-hydroxymethyl and meso-acetoxymethyl counterparts (which in turn are bright, with emission quantum yields in the range of 0.7-1). The nonemissive meso-formyl bodipy dyes thus provide unique opportunities as fluorogenic probes of nucleophilic attack and as fluorescent labeling agents where uncoupled fluorophores will not contribute to the fluorescence background. Overall, the new bodipy dyes reported here are promising candidates for the preparation of fluorescent sensors relying on photoinduced electron transfer and may find use in a number of fluorescent-labeling protocols.

Phenol-Based Lipophilic Fluorescent Antioxidant Indicators: A Rational Approach

The reactivity, electrochemistry, and photophysics of the novel antioxidant indicator B-TOH, a BODIPY-alpha-tocopherol adduct, were investigated. We also studied a newly prepared BODIPY-3,5-di-tert-butyl-4-hydroxybenzoic acid adduct (B-BHB) and compared the results for both sets of probes. Our results highlight the potential of B-TOH as a fluorescent antioxidant indicator and help illustrate the considerations to be taken into account in preparing a receptor-reporter-type fluorescent antioxidant indicator. Based on the experimental values of the redox potentials for the reporter BODIPY and from the redox potentials estimated for the phenol receptor segment, the off-to-on emission enhancement recently reported for B-TOH upon peroxyl radical scavenging can be unequivocally assigned to the deactivation of an intramolecular photoinduced electron transfer (PeT) which operates in the reduced form of B-TOH. Theoretical calculations performed at the B3LYP/6-31G(d) level on HOMO energy levels relative to vacuum further support the deactivation of a PeT mechanism upon peroxyl radical scavenging by B-TOH. Fluorescence lifetimes and fluorescence quantum yields measured in a range of solvent polarities, from hexane to acetonitrile, for B-TOH, B-BHB, and their BODIPY precursors PM605 or PMOH, are consistent with an intramolecular nonradiative decay pathway operative in B-TOH. This pathway is not operative in B-BHB where PeT is deemed highly endergonic based on electrochemical studies. A subsequent analysis on the antioxidant properties of both fluorophore-phenol adducts studied herein indicates that B-TOH antioxidant activity is on par with that of alpha-tocopherol, the most potent naturally occurring lipid soluble antioxidant, whereas B-BHB is a poor antioxidant. Oxygen uptake studies upon peroxyl radical initiated styrene autoxidation and laser flash photolysis studies on the rate of H-atom abstraction by cumyloxyl radicals reveal similar reactivity patterns for B-TOH and 2,2,5,7,8-pentamethyl-6-hydroxychroman (PMHC), an alpha-tocopherol analogue lacking the phytil tail. Analogous reactivity studies on B-BHB underscore its poor antioxidant activity. In general, this work provides substantial amount of information useful in designing off/on lipid soluble fluorescent antioxidant indicators based on phenol moieties.

Fluorogenic α-Tocopherol Analogue for Monitoring the Antioxidant Status within the Inner Mitochondrial Membrane of Live Cells

We report here the preparation of a lipophilic fluorogenic antioxidant (Mito-Bodipy-TOH) that targets the inner mitochondrial lipid membrane (IMM) and is sensitive to the presence of lipid peroxyl radicals, effective chain carriers in the lipid chain autoxidation. Mito-Bodipy-TOH enables monitoring of the antioxidant status, i.e., the antioxidant load and ability to prevent lipid chain autoxidation, within the inner mitochondrial membrane of live cells. The new probe consists of 3 segments: a receptor, a reporter, and a mitochondria-targeting element, constructed, respectively, from an α-tocopherol-like chromanol moiety, a BODIPY fluorophore, and a triphenylphosphonium cation (TPP). The chromanol moiety ensures reactivity akin to that of α-tocopherol, the most potent naturally occurring lipid soluble antioxidant, while the BODIPY fluorophore and TPP ensure partitioning within the inner mitochondrial membrane. Mechanistic studies conducted either in homogeneous solution or in liposomes and in the presence of free radical initiators show that the antioxidant activity of Mito-Bodipy-TOH is on par with that of α-tocopherol. Studies conducted on live fibroblast cells further show the antioxidant depletion in the presence of methyl viologen (paraquat), a known agent of oxidative stress and source of superoxide radical anion (and indirectly, a causative of lipid peroxidation) within the mitochondria matrix. We recorded a ca. 8-fold emission enhancement with Mito-Bodipy-TOH in cells stressed with methyl viologen, whereas no enhancement was observed in control studies with untreated cells. Our findings underscore the potential of the new fluorogenic antioxidant Mito-Bodipy-TOH to study the chemical link between antioxidant load, lipid peroxidation and mitochondrial physiology.

How lipid unsaturation, peroxyl radical partitioning, and chromanol lipophilic tail affect the antioxidant activity of α-tocopherol: direct visualization via high-throughput fluorescence studies conducted with fluorogenic α-tocopherol analogues.

The preparation of two highly sensitive fluorogenic α-tocopherol (TOH) analogues which undergo >30-fold fluorescence intensity enhancement upon reaction with peroxyl radicals is reported. The probes consist of a chromanol moiety coupled to the meso position of a BODIPY fluorophore, where the use of a methylene linker (BODIPY-2,2,5,7,8-pentamethyl-6-hydroxy-chroman adduct, H(2)B-PMHC) vs an ester linker (meso-methanoyl BODIPY-6-hydroxy-2,5,7,8-tetramethylchromane-2-carboxylic acid, H(2)B-TOH) enables tuning their reactivity toward H-atom abstraction by peroxyl radicals. The development of a high-throughput fluorescence assay for monitoring kinetics of peroxyl radical reactions in liposomes is subsequently described where the evolution of the fluorescence intensity over time provides a rapid, facile method to conduct competitive kinetic studies in the presence of TOH and its analogues. A quantitative treatment is formulated for the temporal evolution of the intensity in terms of relative rate constants of H-atom abstraction (k(inh)) from the various tocopherol analogues. Combined, the new probes, the fluorescence assay, and the data analysis provide a new method to obtain, in a rapid, parallel format, relative antioxidant activities in phospholipid membranes. The method is exemplified with four chromanol-based antioxidant compounds differing in their aliphatic tails (TOH, PMHC, H(2)B-PMHC, and H(2)B-TOH). Studies were conducted in six different liposome solutions prepared from poly- and mono-unsaturated and saturated (fluid vs gel phase) lipids in the presence of either hydrophilic or lipophilic peroxyl radicals. A number of key insights into the chemistry of the TOH antioxidants in lipid membranes are provided: (1) The relative antioxidant activities of chromanols in homogeneous solution, arising from their inherent chemical reactivity, readily translate to the microheterogeneous environment at the water/lipid interface; thus similar values for k(inh)(H(2)B-PMHC)/k(inh)(H(2)B-TOH) in the range of 2-3 are recorded both in homogeneous solution and in liposome suspensions with hydrophilic or lipophilic peroxyl radicals. (2) The relative antioxidant activity between tocopherol analogues with the same inherent chemical reactivity but bearing short (PMHC) or long (TOH) aliphatic tails, k(inh)(PMHC)/k(inh)(TOH), is ~8 in the presence of hydrophilic peroxyl radicals, regardless of the nature of the lipid membrane into which they are embedded. (3) Antioxidants embedded in saturated lipids do not efficiently scavenge hydrophilic peroxyl radicals; under these conditions wastage reactions among peroxyl radicals become important, and this translates into larger times for antioxidant consumption. (4) Lipophilic peroxyl radicals show reduced discrimination between antioxidants bearing long and short aliphatic tails, with k(inh)(PMHC)/k(inh)(TOH) in the range of 3-4 for most lipid membranes. (5) Lipophilic peroxyl radicals are scavenged with the same efficiency by all four antioxidants studied, regardless of the nature of their aliphatic tail or the lipid membrane into which they are embedded. These data underpin the key role the lipid environment plays in modulating the rate of reaction of antioxidants characterized by similar inherent chemical reactivity (arising from a conserved chromanol moiety) but differing in their membrane mobility (structural differences in the lipophilic tail). Altogether, a novel, facile method of study, new insights, and a quantitative understanding on the critical role of lipid diversity in modulating antioxidant activity in the lipid milieu are reported.

Chapter 1:Overview of Reactive Oxygen Species

The term ROS (reactive oxygen species), has been coined to define an emerging class of endogenous, highly reactive, oxygen (and nitrogen) -bearing molecules. This chapter provides a general overview of reactive oxygen species including the chemical properties (electronic configuration and thermodynamics) of these species, their sources both endogenous and exogenous and their typical scavengers. The following sections summarize current literature on these topics providing a glimpse of the biological impact of ROS chemistry.

Electronic Excited State Redox Properties for BODIPY Dyes Predicted from Hammett Constants: Estimating the Driving Force of Photoinduced Electron Transfer

Here we formulate equations based solely on empirical Hammett substituent constants to predict the redox potentials for the electronic excited state of boron-dipyrromethene (BODIPY) dyes. We utilized computational, spectroscopic, and electrochemical techniques toward characterizing the effect of substitution at the positions C2, C6, and C8 of the 1,3,5,7-tetramethyl BODIPY core. Working with a library of 100 BODIPY dyes, we found that highest occupied molecular orbital (HOMO) energies calculated at the B3LYP 6-31g(d) level correlated linearly with the Hammett σm value for substituents at position C8 and with Hammett σp values for substituents at positions C2 and C6. In turn, we observed that LUMO energies correlated linearly with Hammett σp at position C8 and with Hammett σm at positions C2 and C6. Focusing on a subset of 26 dyes for which reduction potentials were either previously available or measured herein and ranged from -1.84 to -0.52 V (a full 1.3 V), we found a linear relationship between redox potentials in acetonitrile and HOMO and lowest unoccupied molecule orbital (LUMO) energies determined via density functional theory (DFT). A linear correlation was thus ultimately established between redox potentials in acetonitrile and Hammett substituent constants. Combining this with equations derived for the linear relationship existing between the zero vibrational energy of the excited BODIPY and Hammett substituent constants enabled us to provide the parameters toward predicting the oxidizing/reducing power of photoexcited 1,3,5,7,-tetramethyl BODIPY dyes in their singlet excited state.

Fluorogenic probes for imaging reactive oxygen species

Formed as chemical by‐products of cell metabolism, reactive oxygen species (ROS) are connected to multiple pathologies including age‐related disorders, cancer, and neurodegenerative diseases such as Parkinsons and Alzheimers diseases. New evidence is however emerging pointing to a more complex yet beneficial role ROS play in physiological processes associated with cell signaling. The highly rich and diverse chemistry of ROS, their ubiquitous nature, and their poorly understood biological impact require the development of new chemical tools, including non‐invasive imaging techniques, to explore and elucidate the intrinsic links between the chemistry and biology of ROS. This review highlights recent advances in the development of fluorogenic probes for real‐time visualization in live cells of the generation, accumulation, and consumption of ROS. We will first discuss a number of different photophysical and photochemical processes that may provide intramolecular switches to control the emission of the probes. We will then show how reactions with various specific ROS switch on their emission. Special focus will be placed on recent advances from our group involving the development of lipophilic fluorogenic probes to monitor the production of lipid peroxyl radicals in the lipid membrane of live cells.

Abstract 2458: Targeting membrane fluidity as a therapeutic strategy in cancer using BPM 31510

Cancer cells membranes are relatively more fluid compared to healthy cells. Higher fluidity in cancer cells closely relate to their invasive potential, proliferation, and metastatic ability. Pharmacological modulation of membrane fluidity as a novel therapeutic strategy for potential treatment of cancer is investigated in this study. BPM 31510, a proprietary CoQ10 based liposomal formulation currently in clinical trials affects cell membrane fluidity to influence cancer cell survival. To study the effect of BPM 31510 on biophysical parameters of membrane structure in cancer cells, the CoQ10 concentration in the liposomes was systematically increased and the membrane rigidity (Fluorescence Anisotropy) as function of temperature was measured. A progressive (significant, p Citation Format: Sumit Garg, Sirisha Dhavala, Katerina Krumova, Vivek K. Vishnudas, Joaquin J. Jimenez, Michael Kiebish, Rangaprasad Sarangarajan, Niven R. Narain. Targeting membrane fluidity as a therapeutic strategy in cancer using BPM 31510. [abstract]. In: Proceedings of the 106th Annual Meeting of the American Association for Cancer Research; 2015 Apr 18-22; Philadelphia, PA. Philadelphia (PA): AACR; Cancer Res 2015;75(15 Suppl):Abstract nr 2458. doi:10.1158/1538-7445.AM2015-2458

Abstract 1497: BPM31510 modulates mitochondrial complex activity to influence oxidative stress in effectuating cell death in multiple cancers

Dysregulated mitochondria play a multifaceted role in tumorigenesis through regulation of energy production, biomass, redox state, and engagement of cell death pathways. Perturbations in mitochondrial fluxes (i.e inhibition of electron chain complexes activity, impaired electron flow) have substantial effects on cell viability, suggesting that targeting mitochondrial function could be effective for therapeutic response in cancer. BPM31510, containing oxidized coenzyme Q10 elicits an anti-Warburg effect is currently in phase II clinical trials for solid tumors. Previously, we have demonstrated the anti-cancer properties of BPM31510 in breast and pancreatic xenograft models. Here, we examined the mechanism of action of BPM31510 in vitro. Using a multi-cancer cell panel, BPM31510 was shown to be consistently and selectively cytotoxic to cancer cells, compared to normal and non-tumorigenic controls, and sensitivity did not correlate to cell doubling time or mutational status. Treatment with BPM 31510 (EC50) in breast and pancreatic cancer cells resulted in a time- and dose-dependent decrease in mitochondrial membrane potential which preceded an increase in early and late apoptosis cells, suggesting BPM31510 initiates a mitochondrial mediated cell death pathway. Using a fluorescently labeled CoQ10 we were able to trace the subcellular location of the CoQ10, which predominantly accumulates in mitochondria and lipid droplets in a time dependent manner. Additionally, the mitochondrial enrichment of CoQ10 is accompanied by morphological changes that varied amongst the different cancer cell types. As CoQ10 is a redox molecule required for electron transfer activity between complexes, we hypothesized that disruption of Q-pool homeostasis would alter complex activity. To investigate this, Complex driven respiration was measured in cells treated with BPM31510 and compared to untreated. Alterations in mitochondrial respiration characterized by a dose-dependent decrease in succinate (Complex II) and glycerol-3-phosphate (Complex III)-fueled respiration were observed in cells treated with BPM31510, while no changes were seen in pyruvate driven respiration (Complex I), suggesting that BPM31510 specifically impairs respiration responses that are more dependent on Q-pool functionality. As impairment of the electron transport chain increases intracellular oxidative stress, we next investigated if BPM 31510 treatment increases ROS levels. After 24h treatment, BPM31510 significantly increased ROS levels in treated cancer cells compared to untreated. Furthermore, BPM31510 induced death could be in part prevented by co-treatment with antioxidants. Together, these data demonstrates BPM31510 has anti-cancer activity in multiple cancer cell types and define a unique and novel functional link between mitochondrial Q-pool disruption and the mechanism of action of BPM31510. Citation Format: Tulin Dadali, Katerina Krumova, Anne R. Diers, Pallavi Awate, Ryan Ng, Arleide Lee, Stephane Gesta, Vivek K. Vishnudas, Rangaprasad Sarangarajan, Niven R. Narain. BPM31510 modulates mitochondrial complex activity to influence oxidative stress in effectuating cell death in multiple cancers [abstract]. In: Proceedings of the American Association for Cancer Research Annual Meeting 2017; 2017 Apr 1-5; Washington, DC. Philadelphia (PA): AACR; Cancer Res 2017;77(13 Suppl):Abstract nr 1497. doi:10.1158/1538-7445.AM2017-1497

Abstract 2455: Differences in dynamic modulation of CoQ10 redox status and intracellular localization between non-disease and cancer cell lines

Although it is well recognized that Coenzyme Q10 (CoQ10) is present in all cellular membrane structures, its effects on cellular functions other than mitochondrial regulation is poorly understood. The present study was aimed at gleaning insights into effect on CoQ10 on sub-cellular metabolism, regulation of the redox status, as well as gene regulation. A series of fluorescent probes were developed with the ability to report on the consequence of specific biological events in which CoQ10 was involved. The probes constituted fluorescently labeled CoQ10 analogues designed to track the distribution, biochemical and redox behaviour of CoQ10 in a non-invasive manner providing real time information in live cells. Compartmentalization of fluorescent labeled CoQ10 probe incorporated within BPM 31510 liposomal formulation was characterized in human derived primary non-disease and cancer cell lines. Cellular distribution of the fluorescent CoQ10 varied depending upon cell type. The fluorescent CoQ10 probes were designed and utility to provide a time resolved assessment on the redox state of CoQ10 in whole cells and organelles as a measure of the cell9s overall and intracellular location specific metabolic micro-environments. The ratio of reduced and oxidized form of fluorescent CoQ10 was also examined in relation to ROS production in cancer cells. The overall results describes the presence of a constant redox flux influencing the redox state of CoQ10 within cancer and normal cells with significant variation depending on cell type and disease status. Citation Format: Katerina Krumova, Sumit Garg, Sirisha Dhavala, Vivek K. Vishnudas, Michael A. Kiebish, Rangaprasad Sarangarajan, Niven R. Narain. Differences in dynamic modulation of CoQ10 redox status and intracellular localization between non-disease and cancer cell lines. [abstract]. In: Proceedings of the 106th Annual Meeting of the American Association for Cancer Research; 2015 Apr 18-22; Philadelphia, PA. Philadelphia (PA): AACR; Cancer Res 2015;75(15 Suppl):Abstract nr 2455. doi:10.1158/1538-7445.AM2015-2455