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Dive into the research topics where Katherine E. Holmes is active.

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Featured researches published by Katherine E. Holmes.


Proceedings of the National Academy of Sciences of the United States of America | 2007

Trophic cascade facilitates coral recruitment in a marine reserve

Peter J. Mumby; Alastair R. Harborne; Jodene Williams; Carrie V. Kappel; Daniel R. Brumbaugh; Fiorenza Micheli; Katherine E. Holmes; Craig P. Dahlgren; Claire B. Paris; Paul G. Blackwell

Reduced fishing pressure and weak predator–prey interactions within marine reserves can create trophic cascades that increase the number of grazing fishes and reduce the coverage of macroalgae on coral reefs. Here, we show that the impacts of reserves extend beyond trophic cascades and enhance the process of coral recruitment. Increased fish grazing, primarily driven by reduced fishing, was strongly negatively correlated with macroalgal cover and resulted in a 2-fold increase in the density of coral recruits within a Bahamian reef system. Our conclusions are robust because four alternative hypotheses that may generate a spurious correlation between grazing and coral recruitment were tested and rejected. Grazing appears to influence the density and community structure of coral recruits, but no detectable influence was found on the overall size-frequency distribution, community structure, or cover of corals. We interpret this absence of pattern in the adult coral community as symptomatic of the impact of a recent disturbance event that masks the recovery trajectories of individual reefs. Marine reserves are not a panacea for conservation but can facilitate the recovery of corals from disturbance and may help sustain the biodiversity of organisms that depend on a complex three-dimensional coral habitat.


Conservation Biology | 2008

Coral reef habitats as surrogates of species, ecological functions, and ecosystem services

Peter J. Mumby; Kenneth Broad; Daniel R. Brumbaugh; Craig P. Dahlgren; Alastair R. Harborne; Alan Hastings; Katherine E. Holmes; Carrie V. Kappel; Fiorenza Micheli; James N. Sanchirico

Habitat maps are often the core spatially consistent data set on which marine reserve networks are designed, but their efficacy as surrogates for species richness and applicability to other conservation measures is poorly understood. Combining an analysis of field survey data, literature review, and expert assessment by a multidisciplinary working group, we examined the degree to which Caribbean coastal habitats provide useful planning information on 4 conservation measures: species richness, the ecological functions of fish species, ecosystem processes, and ecosystem services. Approximately one-quarter to one-third of benthic invertebrate species and fish species (disaggregated by life phase; hereafter fish species) occurred in a single habitat, and Montastraea-dominated forereefs consistently had the highest richness of all species, processes, and services. All 11 habitats were needed to represent all 277 fish species in the seascape, although reducing the conservation target to 95% of species approximately halved the number of habitats required to ensure representation. Species accumulation indices (SAIs) were used to compare the efficacy of surrogates and revealed that fish species were a more appropriate surrogate of benthic species (SAI = 71%) than benthic species were for fishes (SAI = 42%). Species of reef fishes were also distributed more widely across the seascape than invertebrates and therefore their use as a surrogate simultaneously included mangroves, sea grass, and coral reef habitats. Functional classes of fishes served as effective surrogates of fish and benthic species which, given their ease to survey, makes them a particularly useful measure for conservation planning. Ecosystem processes and services exhibited great redundancy among habitats and were ineffective as surrogates of species. Therefore, processes and services in this case were generally unsuitable for a complementarity-based approach to reserve design. In contrast, the representation of species or functional classes ensured inclusion of all processes and services in the reserve network.


Ecological Applications | 2008

TROPICAL COASTAL HABITATS AS SURROGATES OF FISH COMMUNITY STRUCTURE, GRAZING, AND FISHERIES VALUE

Alastair R. Harborne; Peter J. Mumby; Carrie V. Kappel; Craig P. Dahlgren; Fiorenza Micheli; Katherine E. Holmes; Daniel R. Brumbaugh

Habitat maps are frequently invoked as surrogates of biodiversity to aid the design of networks of marine reserves. Maps are used to maximize habitat heterogeneity in reserves because this is likely to maximize the number of species protected. However, the techniques efficacy is limited by intra-habitat variability in the species present and their abundances. Although communities are expected to vary among patches of the same habitat, this variability is poorly documented and rarely incorporated into reserve planning. To examine intra-habitat variability in coral-reef fishes, we generated a data set from eight tropical coastal habitats and six islands in the Bahamian archipelago using underwater visual censuses. Firstly, we provide further support for habitat heterogeneity as a surrogate of biodiversity as each predefined habitat type supported a distinct assemblage of fishes. Intra-habitat variability in fish community structure at scales of hundreds of kilometers (among islands) was significant in at least 75% of the habitats studied, depending on whether presence/absence, density, or biomass data were used. Intra-habitat variability was positively correlated with the mean number of species in that habitat when density and biomass data were used. Such relationships provide a proxy for the assessment of intra-habitat variability when detailed quantitative data are scarce. Intra-habitat variability was examined in more detail for one habitat (forereefs visually dominated by Montastraea corals). Variability in community structure among islands was driven by small, demersal families (e.g., territorial pomacentrid and labrid fishes). Finally, we examined the ecological and economic significance of intra-habitat variability in fish assemblages on Montastraea reefs by identifying how this variability affects the composition and abundances of fishes in different functional groups, the key ecosystem process of parrotfish grazing, and the ecosystem service of value of commercially important finfish. There were significant differences in a range of functional groups and grazing, but not fisheries value. Variability at the scale of tens of kilometers (among reefs around an island) was less than that among islands. Caribbean marine reserves should be replicated at scales of hundreds of kilometers, particularly for species-rich habitats, to capture important intra-habitat variability in community structure, function, and an ecosystem process.


Marine Biology | 2010

Acute effects of removing large fish from a near-pristine coral reef.

Douglas J. McCauley; Fiorenza Micheli; Hillary S. Young; Derek P. Tittensor; Daniel R. Brumbaugh; Elizabeth M. P. Madin; Katherine E. Holmes; Jennifer E. Smith; Heike K. Lotze; Paul A. DeSalles; Suzanne N. Arnold; Boris Worm

Large animals are severely depleted in many ecosystems, yet we are only beginning to understand the ecological implications of their loss. To empirically measure the short-term effects of removing large animals from an ocean ecosystem, we used exclosures to remove large fish from a near-pristine coral reef at Palmyra Atoll, Central Pacific Ocean. We identified a range of effects that followed from the removal of these large fish. These effects were revealed within weeks of their removal. Removing large fish (1) altered the behavior of prey fish; (2) reduced rates of herbivory on certain species of reef algae; (3) had both direct positive (reduced mortality of coral recruits) and indirect negative (through reduced grazing pressure on competitive algae) impacts on recruiting corals; and (4) tended to decrease abundances of small mobile benthic invertebrates. Results of this kind help advance our understanding of the ecological importance of large animals in ecosystems.


Chelonian Conservation and Biology | 2013

Ecology and Conservation of Marine Turtles in a Central Pacific Foraging Ground

Eleanor J. Sterling; Katherine W. McFadden; Katherine E. Holmes; Erin C. Vintinner; Felicity Arengo; Eugenia Naro-Maciel

Abstract Foraging grounds are critical to the survival of marine turtles, yet studies of these areas lag behind those of nesting sites. Our study represents the first data and discussion on marine turtle distribution, abundance, and health at a marine turtle foraging ground in the central Pacific, Palmyra Atoll National Wildlife Refuge, which constitutes a regionally important mixed-size-class foraging ground for green turtles (Chelonia mydas) and, to a lesser extent, for hawksbill turtles (Eretmochelys imbricata). Surveys and anecdotal reports suggest that nesting activity is rare, and we have confirmed the presence of limited suitable nesting habitat. During in-water activities from 2008 to 2011, we caught 211 green turtles ranging from postpelagic juveniles to adults (weight: mean  =  44.6 kg, range  =  7.2–146.3 kg; curved carapace length (CCL): mean  =  69.7 cm, range  =  41.0–113.6 cm) and 2 juvenile hawksbills (weight2009  =  16.3 kg, CCL2009  =  57.0; weight2011  =  11.2 kg, CCL2011  =  50.5 cm). Body condition indices did not significantly differ by year of capture. These indices, along with the absence of observed fibropapilloma tumors, indicated that turtles at Palmyra Atoll were on average in very good condition. We also conducted 11 relative abundance surveys from 2005 to 2011, a subset of which revealed an uneven distribution of turtles around Palmyra Atoll with 3 hot spots of turtle abundance off the flats to the north, south, and east. By linking several aspects of our research program with similar efforts at foraging grounds throughout the Pacific Basin, we can further our understanding of poorly known regional migratory connectivity.


Science | 2006

Fishing, Trophic Cascades, and the Process of Grazing on Coral Reefs

Peter J. Mumby; Craig P. Dahlgren; Alastair R. Harborne; Carrie V. Kappel; Fiorenza Micheli; Daniel R. Brumbaugh; Katherine E. Holmes; Judith M. Mendes; Kenneth Broad; James N. Sanchirico; Kevin Buch; Steve J. Box; Richard W. Stoffle; Andrew B. Gill


Advances in Marine Biology | 2006

The Functional Value of Caribbean Coral Reef, Seagrass and Mangrove Habitats to Ecosystem Processes

Alastair R. Harborne; Peter J. Mumby; Fiorenza Micheli; Chris T. Perry; Craig P. Dahlgren; Katherine E. Holmes; Daniel R. Brumbaugh


Journal of Applied Ecology | 2008

Reserve effects and natural variation in coral reef communities

Alastair R. Harborne; Peter J. Mumby; Carrie V. Kappel; Craig P. Dahlgren; Fiorenza Micheli; Katherine E. Holmes; James N. Sanchirico; Kenneth Broad; Ian A. Elliott; Daniel R. Brumbaugh


Marine Biology | 2011

Mitochondrial DNA sequence variation in spiny lobsters: Population expansion, panmixia, and divergence

Eugenia Naro-Maciel; Brendan N. Reid; Katherine E. Holmes; Daniel R. Brumbaugh; Meredith Martin; Rob DeSalle


Biological Conservation | 2014

High vulnerability of ecosystem function and services to diversity loss in Caribbean coral reefs

Fiorenza Micheli; Peter J. Mumby; Daniel R. Brumbaugh; Kenny Broad; Craig P. Dahlgren; Alastair R. Harborne; Katherine E. Holmes; Carrie V. Kappel; Steven Y. Litvin; James N. Sanchirico

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Daniel R. Brumbaugh

American Museum of Natural History

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Craig P. Dahlgren

National Oceanic and Atmospheric Administration

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Peter J. Mumby

University of Queensland

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