Kathleen C. Parker

Fine-scale genetic structure in Pinus clausa (Pinaceae) populations: effects of disturbance history.

Spatial autocorrelation analyses of 12 allozyme loci were used to compare genetic structure within populations of two varieties of Pinus clausa. P. clausa var. immuginata populations tend to be uneven-aged, with continuous recruitment in small gaps created by wind damage, whereas P. clausa var. clausa populations are more even-aged, with recruitment postdating periodic canopy fires. Three var. immuginata populations and three matched pairs of var. clausa populations, including both a mature and a nearby recently burned population, were examined. Aggregation of multilocus genotypes at small distances was evident in all young var. clausa populations. Little inbreeding was apparent among juveniles or adults in these populations; their genetic structure is likely to have resulted from limited seed dispersal. Genotypes were not significantly spatially structured in nearby matched mature populations. Genetic structure was less evident in var. immuginata populations. Aggregated genotypes were only apparent in the population where patches included juveniles of similar ages; dense juvenile clumps in the other two var. immuginata populations comprised a variety of ages. Interannual variability in allele frequencies of surviving seedlings may account for the absence of genetic structure in these populations.

Environmental relationships and vegetation associates of columnar cacti in the northern Sonoran Desert

The environmental distribution, habitat segregation, and vegetation associates of the columnar cacti Carnegiea gigantea, Stenocereus thurberi, and Lophocereus schottii were examined in Organ Pipe Cactus National Monument, Arizona. Three primary environmental gradients were identified with principal components analysis of environmental data: soil texture, elevation/nutrients, and xericness (based on slope aspect and angle). Environmental influents of spatial variation in density were modeled with ordinary least squares regression analysis, and common associates were identified with two-way indicator species analysis for each cactus. Of the three cacti, Carnegiea gigantea occurred over the broadest ecological range of habitats, but was densest on coarse, granitically derived alluvial soils of flat upper bajadas and basin floors, where it was associated with Larrea tridentata, Ambrosia deltoidea, and Opuntia fulgida. Stenocereus thurberi reached its maximum densities on coarse sandy soils of steep, south-facing granitic slopes, with Encelia farinosa, Jatropha cuneata, and Opuntia bigelovii as associates. Lophocereus schottii was restricted to very coarse, granitically derived alluvial soils in the southern part of the monument, where it occurred along wash banks with Beloperone californica, Hymenoclea salsola, Acacia greggii, and Opuntia arbuscula.

LANDSCAPE-SCALE GEOMORPHIC INFLUENCES ON VEGETATION PATTERNS IN FOUR ENVIRONMENTS

This paper reviews and synthesizes research about geomorphic influences on vegetation patterns apparent at the landscape scale. After an overview of the effects that landforms and geomorphic processes have on plant distributions, these relationships are discussed in more detail for each of four distinct physical settings: temperate riparian environments, slopes affected by landslides and other forms of mass movement, desert alluvial fans, and nonmountainous glaciated landscapes. These four landscapes were selected because they encompass a broad range of temporal and spatial scales at which the geomorphic processes most strongly linked with vegetation patterns operate; furthermore, they collectively illustrate some of the more prominent themes in recent research on this topic. Finally, we identify four topics that particularly merit future research on geomorphic-biogeographic interactions: (1) feedback between vegetation and landforms, (2) distinctions between landform characteristics and the associated ge...

Effects of complex geomorphic history on soil and vegetation patterns on arid alluvial fans

The influence of geomorphic history on soil development and vegetation patterns was examined on an alluvial fan in the northern Sonoran Desert. The fan comprised three depositional surfaces ranging in age from early-mid Pleistocene to Holocene. Many plant species showed downfan increases or decreases in cover, as others have reported previously. Soil variables, however, failed to show the simple downfan textural gradient that has traditionally been viewed as the underlying control of downfan variation in plant species composition. Furthermore, depositional surfaces differed not only in terms of pedogenic development and associated physical and chemical characteristics, but also in terms of the plant species each supported. These results emphasize that alluvial fans constitute a three-dimensional landscape mosaic composed of fan surfaces, each with distinct edaphic conditions and vegetation. An appreciation of this geomorphic complexity, which is typical in arid environments, is critical to the understanding of vegetation patterns on alluvial fans.

Disturbance-Mediated Variation in Stand Structure between Varieties of Pinus clausa (Sand Pine)

Geographically mediated differences in exposure to disturbance agents that operate at different scales impose demographic contrasts between plant populations. We examined such effects on the stand-scale population structure of the two varieties of Pinus clausa (sand pine). Pinus clausa var. immuginata stands of the Florida panhandle exhibited reverse-J diameter and age structures, with ongoing stem recruitment and relatively high seedling and sapling densities in canopy gaps. Seedling radial growth rates were relatively slow in P. c. var. immuginata stands, reflecting the partially closed character of the forest canopy. Radial growth-release events among trees were recorded in 35 – 65% of trees in P. c. var. immuginata stands. Timing of releases matched exposure to hurricanes and extratropical storms in these coastal settings. Wind damage provides opportunities for recruitment and growth of stems, so that stands of P. c. var. immuginata do not require stand-destroying disturbances to persist in the landscape. Mature stands of Pinus clausa var. clausa on the Florida peninsula were broadly unimodal in diameter form and narrowly even-aged, with virtually all trees established within a decade following stand-initiating disturbances in the 1920s and 1930s; seedlings were absent. Regeneration of P. c. var. clausa in our study was limited to stands that have experienced crown fire since 1970. Seedlings in the recently burned P. c. var. clausa stands exhibited rapid growth rates. Growth-release events were uncommon in P. c. var. clausa stands, except for an Atlantic coastal population that experienced repeated exposure to hurricanes from 1947 – 1950. Crown fires appear essential to long-term maintenance of naturally seeded populations of Pinus clausa var. clausa on most sites.

Allozyme diversity in Pinus virginiana (Pinaceae): intraspecific and interspecific comparisons

Two of the four members of subsection Contortae of the genus Pinus occur in the southeastern United States: Pinus virginiana, which ranges throughout the southern and central Appalachian Mountains, and P. clausa, which is restricted to Florida and southern Alabama. We examined allozyme variation within P. virginiana and genetic relationships between this species and the two varieties of P. clausa (var. clausa and var. immuginata). P. virginiana maintains more genetic diversity at both the species (Hes = 0.139) and population (Hep = 0.128) levels than the other three species in the subsection, which may reflect the combination of its widespread distribution and the absence of cone serotiny. Genetic differentiation among populations in P. virginiana was relatively low (GST = 0.053), but significant contrasts in allozyme frequencies and genetic diversity were apparent between populations to the northwest vs. outheast of the Appalachian Mountains. These regional differences likely resulted initially from historical processes that occurred during the Pleistocene and early Holocene, and have been reinforced by modern selective pressures and barriers to gene flow. The mean genetic distance between populations of P. virginiana and P. clausa (D = 0.071) was greater than that between populations of the two varieties of P. clausa (D = 0.012), which suggests that the two varieties diverged at some point after the separation of the two species.

Inferring ancient Agave cultivation practices from contemporary genetic patterns

Several Agave species have played an important ethnobotanical role since prehistory in Mesoamerica and semiarid areas to the north, including central Arizona. We examined genetic variation in relict Agave parryi populations northeast of the Mogollon Rim in Arizona, remnants from anthropogenic manipulation over 600 years ago. We used both allozymes and microsatellites to compare genetic variability and structure in anthropogenically manipulated populations with putative wild populations, to assess whether they were actively cultivated or the result of inadvertent manipulation, and to determine probable source locations for anthropogenic populations. Wild populations were more genetically diverse than anthropogenic populations, with greater expected heterozygosity, polymorphic loci, effective number of alleles and allelic richness. Anthropogenic populations exhibited many traits indicative of past active cultivation: fixed heterozygosity for several loci in all populations (nonexistent in wild populations); fewer multilocus genotypes, which differed by fewer alleles; and greater differentiation among populations than was characteristic of wild populations. Furthermore, manipulated populations date from a period when changes in the cultural context may have favoured active cultivation near dwellings. Patterns of genetic similarity among populations suggest a complex anthropogenic history. Anthropogenic populations were not simply derived from the closest wild A. parryi stock; instead they evidently came from more distant, often more diverse, wild populations, perhaps obtained through trade networks in existence at the time of cultivation.

NURSE PLANT RETATIONSHIPS OF COLUMNAR CACTI IN ARIZONA

Patterns of association of three columnar cactus species with potential nurse plants and rocks were examined in Organ Pipe Cactus National Monument, Arizona. Close spatial associates of cacti are often called “nurses” because they provide a less extreme microclimate for cactus seedlings, which improves survival rates. Of the three cacti, Carnegiea gigantea had the greatest frequency of association with nurse plants. Stenocereus thurberi, which is common on steep hillslopes where rocks and crevices offer numerous protected microsites for seedling establishment, was associated with nurse rocks more frequently than were the other two species. Lophocereus schottii showed the lowest frequency of association with nurses. In the Monument, L. schottii reproduces primarily through vegetative propagation, which reduces the need of small cacti for protection from nurses. Species most frequently associated with the three cacti were among the dominant species where each cactus occurred except that sparsely foliated sp...

Genetic consequences of pre-Columbian cultivation for Agave murpheyi and A. delamateri (Agavaceae)

Pre-Columbian farmers cultivated several species of agave in central Arizona from ca. A.D. 600-1350. Because of the longevity and primarily asexual reproduction of these species, relict agave clones remain in the landscape and provide insights into pre-Columbian agricultural practices. We analyzed variation in allozyme allele frequencies to infer genetic effects of prehistoric cultivation on Agave murpheyi and A. delamateri, specifically to estimate genetic diversity and structure, to determine whether cultivated populations descended from a single clone, and to examine regional-scale genetic variation. Agave murpheyi maintained more genetic diversity at the species and population levels than A. delamateri, and A. murpheyi populations typically included more multilocus genotypes. Relict plants from prehistoric fields reflect a more complex history than descent from a single clone; A. murpheyi populations may have included more diversity initially because bulbils (produced routinely in A. murpheyi but not A. delamateri) and possibly seed would have facilitated transport of genetically diverse planting stock. Genetic variation in both cultigens was lower than in most contemporary commercial crops but similar to that observed in modern traditional agricultural systems.

Managing diversity: Domestication and gene flow in Stenocereus stellatus Riccob. (Cactaceae) in Mexico

Microsatellite markers (N = 5) were developed for analysis of genetic variation in 15 populations of the columnar cactus Stenocereus stellatus, managed under traditional agriculture practices in central Mexico. Microsatellite diversity was analyzed within and among populations, between geographic regions, and among population management types to provide detailed insight into historical gene flow rates and population dynamics associated with domestication. Our results corroborate a greater diversity in populations managed by farmers compared with wild ones (HE = 0.64 vs. 0.55), but with regional variation between populations among regions. Although farmers propagated S. stellatus vegetatively in home gardens to diversify their stock, asexual recruitment also occurred naturally in populations where more marginal conditions have limited sexual recruitment, resulting in lower genetic diversity. Therefore, a clear-cut relationship between the occurrence of asexual recruitment and genetic diversity was not evident. Two managed populations adjacent to towns were identified as major sources of gene movement in each sampled region, with significant migration to distant as well as nearby populations. Coupled with the absence of significant bottlenecks, this suggests a mechanism for promoting genetic diversity in managed populations through long distance gene exchange. Cultivation of S. stellatus in close proximity to wild populations has led to complex patterns of genetic variation across the landscape that reflects the interaction of natural and cultural processes. As molecular markers become available for nontraditional crops and novel analysis techniques allow us to detect and evaluate patterns of genetic diversity, genetic studies provide valuable insights into managing crop genetic resources into the future against a backdrop of global change. Traditional agriculture systems play an important role in maintaining genetic diversity for plant species.