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Featured researches published by Katrin K. Halling.


Biophysical Journal | 2008

Cholesterol Interactions with Fluid-Phase Phospholipids: Effect on the Lateral Organization of the Bilayer☆

Katrin K. Halling; Bodil Ramstedt; Joel H. Nyström; J. Peter Slotte; Thomas K.M. Nyholm

The lateral organization of lipids and proteins in cell membranes is recognized as an important factor in several cellular processes. Cholesterol is thought to function as a modulator of the lateral segregation of lipids into cholesterol-poor and cholesterol-rich domains. We investigated how the affinity of cholesterol for different phospholipids, as seen in cholesterol partitioning between methyl-beta-cyclodextrin and large unilamellar vesicles, was reflected in the lateral organization of lipids in complex bilayers. We especially wanted to determine how the low-T(m) lipid affected the lateral structure. Partition experiments showed that cholesterol had a higher affinity for N-oleoyl-sphingomyelin (OSM) than for palmitoyl-oleoyl-phosphatidylcholine (POPC) bilayers, but the highest preference was for N-palmitoyl-sphingomyelin (PSM)-containing bilayers. Partial phase diagrams of POPC/PSM/cholesterol and OSM/PSM/cholesterol bilayers at 23 degrees C and 37 degrees C were used to gain insight into the lateral organization of lipids in bilayers. Analysis of phase diagrams revealed that the phospholipid composition of cholesterol-poor and cholesterol-rich domains reflected the affinity that cholesterol exhibited toward bilayers composed of different lipids. Therefore, the determined affinity of cholesterol for different phospholipid bilayers was useful in predicting the cholesterol-induced lateral segregation of lipids in complex bilayers.


Biochimica et Biophysica Acta | 2008

Bradavidin II from Bradyrhizobium japonicum: a new avidin-like biotin-binding protein.

Satu H. Helppolainen; Juha A. E. Määttä; Katrin K. Halling; J. Peter Slotte; Vesa P. Hytönen; Janne Jänis; Pirjo Vainiotalo; Markku S. Kulomaa; Henri R. Nordlund

A gene encoding an avidin-like protein was discovered in the genome of B. japonicum. The gene was cloned to an expression vector and a protein, named bradavidin II, was produced in E. coli. Bradavidin II has an identity of 20-30% and a similarity of 30-40% with previously discovered bradavidin and other avidin-like proteins. It has biochemical characteristics close to those of avidin and streptavidin and binds biotin tightly. In contrast to other tetrameric avidin-like proteins studied to date, bradavidin II has no tryptophan analogous to the W110 in avidin (W120 in streptavidin), thought to be one of the most essential residues for tight biotin-binding. Homology modeling suggests that a proline residue may function analogously to tryptophan in this particular position. Structural elements of bradavidin II such as an interface residue pattern or biotin contact residues could be used as such or transferred to engineered avidin forms to improve or create new tools for biotechnological applications.


BMC Biotechnology | 2005

Avidin related protein 2 shows unique structural and functional features among the avidin protein family

Vesa P. Hytönen; Juha A. E. Määttä; Heidi Kidron; Katrin K. Halling; Jarno Hörhä; Tuomas Kulomaa; Thomas K.M. Nyholm; Mark S. Johnson; Tiina A. Salminen; Markku S. Kulomaa; Tomi T. Airenne

BackgroundThe chicken avidin gene family consists of avidin and several avidin related genes (AVRs). Of these gene products, avidin is the best characterized and is known for its extremely high affinity for D-biotin, a property that is utilized in numerous modern life science applications. Recently, the AVR genes have been expressed as recombinant proteins, which have shown different biotin-binding properties as compared to avidin.ResultsIn the present study, we have employed multiple biochemical methods to better understand the structure-function relationship of AVR proteins focusing on AVR2. Firstly, we have solved the high-resolution crystal structure of AVR2 in complex with a bound ligand, D-biotin. The AVR2 structure reveals an overall fold similar to the previously determined structures of avidin and AVR4. Major differences are seen, especially at the 1–3 subunit interface, which is stabilized mainly by polar interactions in the case of AVR2 but by hydrophobic interactions in the case of AVR4 and avidin, and in the vicinity of the biotin binding pocket. Secondly, mutagenesis, competitive dissociation analysis and differential scanning calorimetry were used to compare and study the biotin-binding properties as well as the thermal stability of AVRs and avidin. These analyses pinpointed the importance of residue 109 for biotin binding and stability of AVRs. The I109K mutation increased the biotin-binding affinity of AVR2, whereas the K109I mutation decreased the biotin-binding affinity of AVR4. Furthermore, the thermal stability of AVR2(I109K) increased in comparison to the wild-type protein and the K109I mutation led to a decrease in the thermal stability of AVR4.ConclusionAltogether, this study broadens our understanding of the structural features determining the ligand-binding affinities and stability as well as the molecular evolution within the protein family. This novel information can be applied to further develop and improve the tools already widely used in avidin-biotin technology.


Biochimica et Biophysica Acta | 2008

Glycosylation induces shifts in the lateral distribution of cholesterol from ordered towards less ordered domains.

Katrin K. Halling; Bodil Ramstedt; J. Peter Slotte

Several studies have indicated the involvement of steryl glycosides in the cellular stress response. In this work, we have compared the effect of 1-O-cholesteryl-beta-d-glucoside, 1-O-cholesteryl-beta-d-galactoside and cholesterol on the properties of glycerophospholipid and sphingolipid bilayers. The studies were performed in order to gain insight into the change in membrane properties that would follow upon the glycosylation of cholesterol in cells subjected to stress. DPH anisotropy measurements indicated that the cholesteryl glycosides (10-40 mol%) increased the order of the hydrophobic region of a POPC bilayer almost as efficiently as cholesterol. In a PSM bilayer, the cholesteryl glycosides were however shown to be much less effective compared to cholesterol in ordering the hydrocarbon chain region at temperatures above the gel to liquid-crystalline phase transition. Fluorescence quenching analysis of multicomponent lipid bilayers demonstrated that the cholesteryl glycosides, in contrast to cholesterol, were unable to stabilize ordered domains rich in PSM against temperature-induced dissociation. When the sterols were incorporated into bilayers composed of both POPC and PSM, the cholesteryl glycosides showed a higher propensity, compared to cholesterol, to influence the endothermal component representing the melting of POPC-rich domains, as determined by differential scanning calorimetry. Taken together, the results indicate that the glycosylation of cholesterol diminishes the ability of the sterol to reside in lateral domains constituted by membrane lipids having highly ordered hydrocarbon chains.


Archives of Biochemistry and Biophysics | 2002

Characterization of flavonoid--biomembrane interactions.

Fredrik Ollila; Katrin K. Halling; Pia Vuorela; Heikki Vuorela; J. Peter Slotte


Biochimica et Biophysica Acta | 2004

Membrane properties of plant sterols in phospholipid bilayers as determined by differential scanning calorimetry, resonance energy transfer and detergent-induced solubilization.

Katrin K. Halling; J. Peter Slotte


Biochimica et Biophysica Acta | 2005

Displacement of sterols from sterol/sphingomyelin domains in fluid bilayer membranes by competing molecules

Sonja M.K. Alanko; Katrin K. Halling; Stina Maunula; J. Peter Slotte; Bodil Ramstedt


Biochemical Journal | 2005

Tetravalent single-chain avidin: from subunits to protein domains via circularly permuted avidins

Henri R. Nordlund; Vesa P. Hytönen; Jarno Hörhä; Juha A. E. Määttä; Daniel White; Katrin K. Halling; Eevaleena J. Porkka; J. Peter Slotte; Olli H. Laitinen; Markku S. Kulomaa


Chemistry & Biology | 2006

Binding Properties of HABA-Type Azo Derivatives to Avidin and Avidin-Related Protein 4

Tiina Paldanius; Vesa P. Hytönen; Thomas K.M. Nyholm; Katrin K. Halling; Juhani Huuskonen; Olli T. Pentikäinen; Kari Rissanen; J. Peter Slotte; Tomi T. Airenne; Tiina A. Salminen; Markku S. Kulomaa; Mark S. Johnson


BMC Structural Biology | 2007

Structure and characterization of a novel chicken biotin-binding protein A (BBP-A)

Vesa P. Hytönen; Juha A. E. Määttä; Einari A. Niskanen; Juhani Huuskonen; Kaisa Helttunen; Katrin K. Halling; Henri R. Nordlund; Kari Rissanen; Mark S. Johnson; Tiina A. Salminen; Markku S. Kulomaa; Olli H. Laitinen; Tomi T. Airenne

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