Kay M. Parkhurst

Rapid preparation of native alpha and beta chains of human hemoglobin

1. Current procedures for the isolation of native chains of hemoglobin employ two ion exchange columns for each chain and result in readily autoxidizable chains with measurable contamination by Hb and Hg. 2. In the new procedure, altered buffer conditions on the first column reduce Hb contamination from 2 to 5% to less than 1%, the limit of detectability. 3. The second column and lengthy washes with beta mercaptoethanol are replaced by incubation with DTT for 1 min for alpha chains and, for beta chains, three incubations with DTT and separations by gel-filtration. The residual Hg is less than 0.1%. 4. Oxidations in the previous procedure resulted in low yields and unreliable spectroscopic assessments of bound Hg. The new procedure resulted in a simple UV assay for Hg-free chains. 5. Hemoglobin reconstituted from these oxy-chains was identical to native Hb in oxygen binding equilibria and in the kinetics of CO binding following laser photolysis.

Detection of point mutations in DNA by fluorescence energy transfer

A method has been developed for the rapid and direct identification of a single point mutation in a DNA sequence using fluorescence resonance energy transfer (FRET). The probe was a 16-base oligomer with 58-bound x-rhodamine and 38-bound fluorescein (R*16*F); the two dyes acted as a donor/acceptor pair for FRET, resulting in a dramatic difference in the fluorescence emission of the R*16*F in a duplex structure (hybridized to a complementary strand) and as a single strand (melted). This difference was used to obtain the melting temperature (Tm), by spectroscopically following the transition from double to single strand, for the probe hybridized to three different strands: the 16-base complement, the 16-base complement containing a single base mismatch, and the 16-base complementary sequence in the phage DNA M13mp18(+). The Tms thus determined for the perfectly base-paired duplexes, with R*16*F hybridized to the 16-mer complement and to M13, differed by 2°C, whereas the Tm obtained for R*16*F hybridized to the mismatched 16-mer complement was 10°C lower than that for the perfect duplex. The sharpness of the transition and the ease of detection allow single base mismatches to be reliably detected in nano- and subnanomolar concentrations in less than 1 h following hybridization.