Kaylie L. Young

DNA-nanoparticle superlattices formed from anisotropic building blocks

Directional bonding interactions in solid-state atomic lattices dictate the unique symmetries of atomic crystals, resulting in a diverse and complex assortment of three-dimensional structures that exhibit a wide variety of material properties. Methods to create analogous nanoparticle superlattices are beginning to be realized, but the concept of anisotropy is still largely underdeveloped in most particle assembly schemes. Some examples provide interesting methods to take advantage of anisotropic effects, but most are able to make only small clusters or lattices that are limited in crystallinity and especially in lattice parameter programmability. Anisotropic nanoparticles can be used to impart directional bonding interactions on the nanoscale, both through face-selective functionalization of the particle with recognition elements to introduce the concept of valency, and through anisotropic interactions resulting from particle shape. In this work, we examine the concept of inherent shape-directed crystallization in the context of DNA-mediated nanoparticle assembly. Importantly, we show how the anisotropy of these particles can be used to synthesize one-, two- and three-dimensional structures that cannot be made through the assembly of spherical particles.

Establishing the design rules for DNA-mediated programmable colloidal crystallization

DNA-programmable colloidal crystals are assembled with 5–80 nm nanoparticles, and the lattice parameters of the resulting crystals vary from 25 to 225 nm. A predictable and mathematically definable relationship between particle size and DNA length dictates the assembly and crystallization processes, creating a set of design rules for DNA-based nanoscale assembly.

Using DNA to design plasmonic metamaterials with tunable optical properties.

Abstract : Due to their potential for creating designer materials, the 3D assembly of nanoparticle building blocks into macroscopic structures with well-defined order and symmetry remains one of the most important challenges in materials science. [ 1 5 ] Furthermore, superlattices consisting of noble-metal nanoparticles have emerged as a new platform for the bottom-up design of plasmonic metamaterials. [ 6 8 ] The allure of optical metamaterials is that they provide a means for altering the temporal and spatial propagation of electromagnetic fields, resulting in materials that exhibit many properties that do not exist in nature. [ 9 13 ] With the vast array of nanostructures now synthetically realizable, computational methods play a crucial role in identifying the assemblies that exhibit the most exciting properties. [ 14 ] Once target assemblies are identified, the synthesis of nanometer-scale structures for use at optical and IR wavelengths must be taken into account. Many of the current methods to fabricate metamaterials in the optical range use serial lithographic-based approaches. [ 6 ] The challenge of controlled assembly into well-defined architectures has kept bottom-up methods that rely on the self-organization of colloidal metal nanoparticles from being fully explored for metamaterial applications. [ 8 ] DNA-mediated assembly of nanoparticles has the potential to help overcome this challenge. The predictability and programmability of DNA makes it a powerful tool for the rational assembly of plasmonic nanoparticles with tunable nearest-neighbor distances and symmetries. [ 1,15 18 ] Herein, we combine theory and experiment to study a new class of plasmonic superlattices first using electrodynamics simulations to identify that superlattices of spherical silver nanoparticles (Ag NPs) have the potential to exhibit emergent metamaterial properties, including epsilon-near-zero (ENZ) behavior, [ 13 ] and a region with an optically metallic response.

Assembly of reconfigurable one-dimensional colloidal superlattices due to a synergy of fundamental nanoscale forces

We report that triangular gold nanoprisms in the presence of attractive depletion forces and repulsive electrostatic forces assemble into equilibrium one-dimensional lamellar crystals in solution with interparticle spacings greater than four times the thickness of the nanoprisms. Experimental and theoretical studies reveal that the anomalously large d spacings of the lamellar superlattices are due to a balance between depletion and electrostatic interactions, both of which arise from the surfactant cetyltrimethylammonium bromide. The effects of surfactant concentration, temperature, ionic strength of the solution, and prism edge length on the lattice parameters have been investigated and provide a variety of tools for in situ modulation of these colloidal superstructures. Additionally, we demonstrate a purification procedure based on our observations that can be used to efficiently separate triangular nanoprisms from spherical nanoparticles formed concomitantly during their synthesis.

Hollow spherical nucleic acids for intracellular gene regulation based upon biocompatible silica shells

Cellular transfection of nucleic acids is necessary for regulating gene expression through antisense or RNAi pathways. The development of spherical nucleic acids (SNAs, originally gold nanoparticles functionalized with synthetic oligonucleotides) has resulted in a powerful set of constructs that are able to efficiently transfect cells and regulate gene expression without the use of auxiliary cationic cocarriers. The gold core in such structures is primarily used as a template to arrange the nucleic acids into a densely packed and highly oriented form. In this work, we have developed methodology for coating the gold particle with a shell of silica, modifying the silica with a layer of oligonucleotides, and subsequently oxidatively dissolving the gold core with I(2). The resulting hollow silica-based SNAs exhibit cooperative binding behavior with respect to complementary oligonucleotides and cellular uptake properties comparable to their gold-core SNA counterparts. Importantly, they exhibit no cytotoxicity and have been used to effectively silence the eGFP gene in mouse endothelial cells through an antisense approach.

A Directional Entropic Force Approach to Assemble Anisotropic Nanoparticles into Superlattices

Abstract : Not touching but sticking: By using cationic surfactant micelles as depletants, a directional entropic force approach (DEFA) assembles anisotropic nanoparticles into superlattices in solution. The micelles induce the face-to-face stacking of the nanoparticles to maximize the systems entropy. The shape of the nanoparticles determines the symmetry of the superlattice, the interparticle spacing is determined by the charged surfactant.

Plasmonically Controlled Nucleic Acid Dehybridization with Gold Nanoprisms

Remote release: Triangular gold nanoprisms convert 1064 nm laser irradiation into heat selectively to allow the dehybridization of oligonucleotide conjugated to their surface (see scheme). These conjugates show unprecedented morphological stability under hours of irradiation. Released nucleic acids are unharmed by this process and can be repeatedly dehybridized and sequestered under spatiotemporal control.

Anisotropic Nanoparticles as Shape-Directing Catalysts for the Chemical Etching of Silicon

Anisotropic Au nanoparticles have been used to create a library of complex features on silicon surfaces. The technique provides control over feature size, shape, and depth. Moreover, a detailed study of the etching rate as a function of the nanoparticle surface facet interfaced with the silicon substrate suggested that the etching is highly dependent upon the facet surface energy. Specifically, the etching rate for Au nanocubes with {100}-terminated facets was ~1.5 times higher than that for triangular nanoprisms with {111} facets. Furthermore, this work gives fundamental insight into the mechanism of metal-catalyzed chemical etching.

Oligonucleotide flexibility dictates crystal quality in DNA-programmable nanoparticle superlattices.

The evolution of crystallite size and microstrain in DNA-mediated nanoparticle superlattices is dictated by annealing temperature and the flexibility of the interparticle bonds. This work addresses a major challenge in synthesizing optical metamaterials based upon noble metal nanoparticles by enabling the crystallization of large nanoparticles (100 nm diameter) at high volume fractions (34% metal).

Counting the Number of Magnesium Ions Bound to the Surface-Immobilized Thymine Oligonucleotides That Comprise Spherical Nucleic Acids

Label-free studies carried out under aqueous phase conditions quantify the number of Mg(2+) ions binding to surface-immobilized T40 sequences, the subsequent reordering of DNA on the surface, and the consequences of Mg(2+) binding for DNA-DNA interactions. Second harmonic generation measurements indicate that, within error, 18-20 Mg(2+) ions are bound to the T40 strand at saturation and that the metal-DNA interaction is associated with a near 30% length contraction of the strand. Structural reordering, evaluated using vibrational sum frequency generation, atomic force microscopy, and dynamic light scattering, is attributed to increased charge screening as the Mg(2+) ions bind to the negatively charged DNA, reducing repulsive Coulomb forces between nucleotides and allowing the DNA single strands to collapse or coil upon themselves. The impact of Mg(2+) binding on DNA hybridization and duplex stability is assessed with spherical nucleic acid (SNA) gold nanoparticle conjugates in order to determine an optimal working range of Mg(2+) concentrations for DNA-DNA interactions in the absence of NaCl. The findings are consistent with a charge titration effect in which, in the absence of NaCl, (1) hybridization does not occur at room temperature if an average of 17.5 or less Mg(2+) ions are bound per T40 strand, which is not reached until the bulk Mg(2+) concentration approaches 0.5 mM; (2) hybridization proceeds, albeit with low duplex stability having an average Tm of 31(3)°C, if an average of 17.5-18.0 Mg(2+) ions are bound; and (3) highly stable duplexes having a Tm of 64(2)°C form if 18.5-19.0 Mg(2+) ions are bound, corresponding to saturation of the T40 strand.