Kazushi Miyashita

Environmental DNA as a 'Snapshot' of Fish Distribution: A Case Study of Japanese Jack Mackerel in Maizuru Bay, Sea of Japan.

Recent studies in streams and ponds have demonstrated that the distribution and biomass of aquatic organisms can be estimated by detection and quantification of environmental DNA (eDNA). In more open systems such as seas, it is not evident whether eDNA can represent the distribution and biomass of aquatic organisms because various environmental factors (e.g., water flow) are expected to affect eDNA distribution and concentration. To test the relationships between the distribution of fish and eDNA, we conducted a grid survey in Maizuru Bay, Sea of Japan, and sampled surface and bottom waters while monitoring biomass of the Japanese jack mackerel (Trachurus japonicus) using echo sounder technology. A linear model showed a high R2 value (0.665) without outlier data points, and the association between estimated eDNA concentrations from the surface water samples and echo intensity was significantly positive, suggesting that the estimated spatial variation in eDNA concentration can reflect the local biomass of the jack mackerel. We also found that a best-fit model included echo intensity obtained within 10–150 m from water sampling sites, indicating that the estimated eDNA concentration most likely reflects fish biomass within 150 m in the bay. Although eDNA from a wholesale fish market partially affected eDNA concentration, we conclude that eDNA generally provides a ‘snapshot’ of fish distribution and biomass in a large area. Further studies in which dynamics of eDNA under field conditions (e.g., patterns of release, degradation, and diffusion of eDNA) are taken into account will provide a better estimate of fish distribution and biomass based on eDNA.

Target strength of mesopelagic lanternfishes (family Myctophidae) based on swimbladder morphology

Yasuma, H., Sawada, K., Ohshima, T., Miyashita, K., and Aoki, I. 2003. Target strength of mesopelagic lanternfishes (family Myctophidae) based on swimbladder morphology. � ICES Journal of Marine Science, 60: 584� 591. This article reports theoretical values of target strength (TS) for mesopelagic lanternfishes based on morphological measurements of their swimbladders. Three species of lanternfishes, Diaphus theta (26.9� 77.4 mm standard length (SL)), Symbolophorus californiensis (85.0� 108.4 mm SL), and Notoscopelus japonicus (126.0� 133.2 mm SL), were examined. After external morphological measurement of the fish body, a specialized ‘‘soft X-ray’’ imaging system was used to map the swimbladders and obtain their morphological parameters. The swimbladder was inflated in D. theta, uninflated in S. californiensis, and was absent in N. japonicus. For D. theta, the swimbladder length does not increase in proportion to the body length, suggesting that the contribution of the swimbladder to acoustic reflection is reduced with growth in this fish. Based on the morphological measurements, the theoretical TS of the fish at 38 kHz was calculated using the approximate deformed-cylinder model (DCM) and the general prolate-spheroid model (PSM). For all three species, the calculations showed about 3 dB difference between the TS indicated by the DCM and PSM. Given that the description of body shape is poor in PSM, the DCM results were adopted for fish without a swimbladder or an empty one. The intercept b20 in the standard formula TS ¼ 20 log SL þ b20 was � 85.7 dB (DCM) for S. californiensis and � 86.7 dB (DCM) for N. japonicus. On the other hand, the PSM model was adopted for D. theta since its swimbladder has too small an aspect ratio to apply the DCM. For D. theta, the relationship between SL and TS is best expressed by TS ¼ 11:8 log SL � 63:5, which implies that its scattering cross-section is not proportional to the square of the body length. 2003 International Council for the Exploration of the Sea. Published by Elsevier Science Ltd. All rights

Life history and migration of Sakhalin taimen, Hucho perryi, caught from Lake Akkeshi in eastern Hokkaido, Japan, as revealed by Sr:Ca ratios of otoliths

Microchemical analysis of the strontium (Sr) and calcium (Ca) ratios of otoliths was conducted to determine the life history and migration of anadromous Sakhalin taimen, Hucho perryi. In 2008 and 2009, 10 specimens were sampled from Lake Akkeshi in eastern Hokkaido, Japan. Our results indicated that some specimens migrated to brackish waters during their early life histories. Because the Sr:Ca ratios of the specimens in this study were all less than those of specimens from Sakhalin Island during a previous study, specimens from Lake Akkeshi may have migrated to brackish water, or may have remained in the ocean for only a short period.

The influence of warp length on trawl dimension and catch of walleye pollock Theragra chalcogramma in a bottom trawl survey

Variations in trawl dimension, bottom contact, and catch with differing warp lengths during walleye pollock surveys conducted by the Fisheries Research Agency were examined. The ratio of warp length to fishing depth (scope ratio) was set at 2.5, 3.0 and 3.5 at depths of 110 m. At tact the bottom. Footgear contact was complete when the scope ratio was 3.0 or more. Walleye pollock, sculpins and flatfishes were the main catch in all tows, and the catch increased with scope ratio. There was no difference in the length frequency of walleye pollock (n=300) captured at 2.5 and 3.0 scope ratio. However, the length frequency at 3.5 was significantly different from that of other scope ratios. These results suggest that at a scope ratio of 3.0 or more, the trawl door will not leave the bottom at any depths. To complimentecho surveys for walleye pollock, a 3.0 scope ratio would be optimal, since the catch data for a 3.5 scope ratio was dissimilar from that of scope ratios.

Migratory patterns of exotic brown trout Salmo trutta in south-western Hokkaido, Japan, on the basis of otolith Sr:Ca ratios and acoustic telemetry.

Acoustic telemetry and microchemical analysis of otolith strontium-calcium ratios were used to evaluate how exotic brown trout Salmo trutta have responded to Japanese riverine environments of south-western Hokkaido by observing their migratory patterns. The existence of anadromous S. trutta was also verified. Most S. trutta caught in rivers for otolith analysis were freshwater residents (95·6%), whereas those caught in the sea were mainly smolts (91·3%), which had just migrated from rivers during spring. Anadromous S. trutta (n = 6) were captured in rivers and in the sea, confirming the existence of mature pre- and post-spawning fish. According to telemetry results, both mature and immature S. trutta used the river in winter, and their estimated sea-run timings showed individual differences. Through the combination of these two methods, migratory patterns on various spatio-temporal scales were observed. This first documentation of the presence of both male and female anadromous S. trutta in the same region within Japan indicated the risk of further colonization of exotic S. trutta via oceanic migration.

Spatial and temporal variation in the distribution of juvenile southern bluefin tuna Thunnus maccoyii: Implication for precise estimation of recruitment abundance indices

Acoustic tags were used to examine the spatial and temporal distribution of southern bluefin tuna (SBT) in southern Western Australia, which is in a region where fishery-independent acoustic surveys of the recruitment abundance index of SBT have been historically undertaken. We investigated patterns of SBT distribution within and inshore of the acoustic survey area during three summer seasons. Annual differences in distribution patterns were characterized by two distinctive migration pathways. An inshore-migrating pathway was observed in two seasons (2004/2005 and 2006/2007), with a relatively high proportion of tagged SBT (84.5, 65.0%) migrating inshore of the acoustic survey area. The other pathway was concentrated along the shelf (2005/2006 season), with an estimated 63.3% of tagged SBT moving within the survey area. These variable migration patterns may bias the interannual fluctuations in abundance indices. Current survey methods can be modified to include both inshore and continental shelf areas. This contribution shows that the accuracy of acoustic surveys can be improved by including ecological patterns.

Correction Factors Derived from Acoustic Tag Data for a Juvenile Southern Bluefin Tuna Abundance Index in SouthernWestern Australia

Juvenile southern bluefin tuna (SBT, Thunnus maccoyii), migrate down the coast of Western Australia reaching the southern coast at age-1. In these waters an acoustic survey for SBT schools was initiated to generate a fisheries-independent abundance index. A decline in this abundance index led to an acoustic tagging and monitoring project to determine if a change in migration route or timing could explain the decline. Five years of acoustic monitoring revealed interannual differences in key factors that could impact the abundance index. Acoustic tag data were used to demonstrate that (i) a high proportion of fish (~70%) may be too shallow for detection in the acoustic survey, and that interannual variation in (ii) inshore-offshore fraction (~30–70% each year) and (iii) residence time (12–37 days) will impact calculation of an index. These factors should be included in estimating an abundance index for SBT, together with a correction for (iv) the fraction of juvenile SBT that migrate to southern Western Australia. Collectively, these results illustrate how electronic tagging data can be used to improve understanding of abundance patterns necessary for sustainable management of this exploited species.

Movement patterns of adult Sakhalin taimen, Parahucho perryi, between stream habitats of the Bekanbeushi River system, eastern Hokkaido, Japan

The behavior of endangered adult Sakhalin taimen Parahucho perryi was tracked during 2008–2010 using acoustic telemetry in the Bekanbeushi River system, which flows through eastern Hokkaido, Japan. Movement distances per unit time of tracked P. perryi were compared between mid- and downstream habitats. Results indicated that movement distances were significantly longer in downstream habitats during all seasons. The movement distances in each stream decreased from spring to autumn. Moreover, tracked P. perryi exhibited crepuscular movement patterns; however, patterns were less pronounced in downstream habitats than in up- and midstream habitats. These findings strongly suggested that adult P. perryi exhibit nearly distinctive movement patterns across stream habitats; thus, fish may adopt different foraging tactics in each stream habitat. Fish moved more frequently in spring, which included the post-wintering and post-spawning season, most likely to search for food and more desirable habitat for recovery.

Riverine environmental characteristics and seasonal habitat use by adult Sakhalin taimen Hucho perryi.

The study identified seasonal habitat use by endangered adult Sakhalin taimen Hucho perryi and the environmental characteristics of their habitat (water depth, amount of riparian forest and sinuosity). Fifteen adult H. perryi with acoustic tags were tracked by towing an acoustic receiver with a canoe in the Bekanbeushi River system in eastern Hokkaido Island, Japan, during each month from late April to late November 2008. Individuals mainly used midstream (shallower than downstream) habitats in all seasons. These locations were generally characterized by relatively dense riparian forests and high sinuosity, indicating the presence of pools. In spring, individuals used habitats with less riparian forest cover compared to mean value of the river channel. From spring to autumn, adult H. perryi selected limnologically complex habitats with meandering channels. From summer to autumn, individuals selected habitats with more riparian forest cover. The inverse relationship between H. perryi detection and riparian forest area in spring was a result of seasonal defoliation in deciduous riparian forests.

Growth and age composition of northern shrimp Pandalus eous estimated by multiple length frequency analysis

Abstract We examined growth of northern shrimp Pandalus eous in the Sea of Japan, off western Hokkaido, to improve estimations of catch-at-age for stock assessment. Multiple length frequency analysis based on length frequency data collected by a scientific research vessel was conducted to examine length-at-age in the shrimp population. Multi-normal distributions estimated using maximum likelihood indicated a good fit to length distributions. AIC values and regression analyses revealed annual growth variation and a decreasing trend in the length at several age classes in the shrimp population. We revised the method for estimating catch-at-age from the age-conversion table (ACT), which is a simple method for age determination, to age–length keys (ALK) calculated from the results of multiple length frequency analysis. Abundant year classes caught successively year after year could be more easily identified from the catch-at-age data computed using ALK than by using ACT. Our results suggested not only that the mean size of commercial landings fluctuated based on changes in age composition but also that a decrease in the length-at-age in the population influenced the consistent size decrease of commercial landings.