Kazutaka Shimoda

Hierarchical genetic structure of native masu salmon populations in Hokkaido, Japan

Identification of the spatial extent of genetic structuring that may be influenced by evolutionary, ecological and historical factors is critical for effective conservation or management strategies. Masu salmon Oncorhynchus masou is commonly distributed in Far East, however, many local populations have been under threats of decline due to habitat destruction, overexploitation, and genetic introgression. To reveal the spatial genetic structure of native masu salmon populations in Hokkaido, masu salmon samples were collected from 16 rivers in which there was no official record of artificial releases of any masu salmon stock and were analyzed using 15 microsatellite loci. A Bayesian assignment test revealed that masu salmon populations were divided into two genetically distinct groups: the northeastern and southwestern groups. For within-group genetic structure, all populations, except for geographically proximate populations, were significantly different from each other. AMOVA revealed that genetic variation at among-group level based on groups identified assignment test was greater than that of groups based on geographic locations. There was no significant IBD for the 16 populations. However, the Mantel test revealed significant IBD for the northeastern group, but did not for the southwestern group. This study suggested that native masu salmon populations in Hokkaido exhibit a hierarchical genetic structure that is largely a result of their precise homing behavior. The results of this study also highlight the importance of defining populations by using genetic data rather than by using predefined populations based on geographic locations for the correct determination of genetic structure.

Estimation of heritability of vertebral number in chum salmon Oncorhynchus keta

Hereditary causes of variation in the vertebral number of chum salmon were analyzed to estimate heritability for populations in the Chitose and Shikiu Rivers, Hokkaido Island, northern Japan. A total of 70 families were produced by diallel cross mating and then heritability was estimated using two statistical tests: a two-way ANOVA and a parent-offspring regression. Heritability estimates ranged from 0.26 to 1.91 and showed a strong correlation between the values from the two different tests. Estimates from female components were substantially higher than those from male components, which can be attributed to the maternal effect. Heritability in the Shikiu River population was shown to be higher than that in the Chitose River population. These results indicate that the heritability of vertebral number in chum salmon is generally high, and also that vertebral number is controlled by hereditary causes.