Kazuyoshi Hosaka

The origin of the cultivated tetraploid potato based on chloroplast DNA.

SummaryBy using restriction enzyme analysis of chloroplast DNA, a geographical cline from the Andean region to coastal Chile was found for the tetraploid potato (Solanum tuberosum). This supports the Andean origin of Chilean ssp. tuberosum. One of the relic cultivars of the early introduction of potato to Europe had ssp. andigena type chloroplast DNA. Its derivatives were largely lost in the mid-19th century due to the late blight epidemic and were replaced by ssp. tuberosum originally introduced from Chile. Therefore, the present common potato has the same type chloroplast DNA as Chilean ssp. tuberosum.

Who is the mother of the potato? — restriction endonuclease analysis of chloroplast DNA of cultivated potatoes

SummaryChloroplast DNA from 44 lines of 16 wild and 7 cultivatedSolanum species were compared by restriction endonuclease analysis. Seven chloroplast genome types were identified among them by 5 restriction enzymes: Type A (S. tuberosum ssp.andigena andS. maglia); Type S (S. goniocalyx, S. phureja, S. stenotomum, S. ×chaucha and a line of ssp.andigena); Type C (S. acaule, S. bukasovii, S. canasense, S. multidissectum andS. ×juzepczukii); Type T (S. tuberosum ssp.tuberosum); Type W (other wild species); Type W′ (S. chacoense f.gibberulosum) and Type W″ (S. tarijense). From this cytoplasmic identification, it was concluded thatS. goniocalyx, S. phureja, S. ×chaucha and ssp.andigena were derived fromS. stenotomum or its primitive type, which may have originally evolved itself fromS. canasense. The chloroplast genome of the European potato, however, was introduced from the Chilean potato, which might have been primarily constructed with the nuclear genome from ssp.andigena and with cytoplasm from other species. The cytoplasmic donor of the Chilean potato could not be determined.

Species relationships in the subgenus Ceratotropis (genus Vigna) as revealed by RAPD analysis

SummaryThe genetic variation among 23 accessions of 5 species in the subgenus Ceratotropis, genus Vigna, were investigated by random amplified polymorphic DNA (RAPD) analysis. A total of 404 fragments amplified with 24 primers were scored and analyzed by cluster analysis. The accessions used were separated into two main groups with an average of 70% differences. Within the main groups, five subgroups were recognized, which are in complete agreement with taxonomic species. Wild forms were always grouped with their most closely related cultivated forms and they showed variation in each species. The largest intraspecific variation was found in V. radiata (mungbean), in which wild forms (V. radiata var. sublobata) were highly different from each other and from cultivated forms. V. angularis (adzuki bean) showed the least variation and thus, was probably differentiated in relatively recent times.

Origin of chloroplast DNA diversity in the Andean potatoes.

SummaryWide chloroplast DNA (ctDNA) diversity has been reported in the Andean cultivated tetraploid potato, Solanum tuberosum ssp. andigena. Andean diploid potatoes were analyzed in this study to elucidate the origin of the diverse ctDNA variation of the cultivated tetraploids. The ctDNA types of 58 cultivated diploid potatoes (S. stenotomum, S. goniocalyx and S. phureja), 35 accessions of S. sparsipilum, a diploid weed species, and 40 accessions of the wild or weed species, S. chacoense, were determined based on ctDNA restriction fragment patterns of BamHI, HindIII and PvuII. Several different ctDNA types were found in the cultivated potatoes as well as in weed and wild potato species; thus, intraspecific ctDNA variation may be common in both wild and cultivated potato species and perhaps in the higher plant kingdom as a whole. The ctDNA variation range of cultivated diploid potatoes was similar to that of the tetraploid potatoes, suggesting that the ctDNA diversity of the tetraploid potato could have been introduced from cultivated diploid potatoes. This provided further evidence that the Andean cultivated tetraploid potato, ssp. andigena, could have arisen many times from the cultivated diploid populations. The diverse but conserved ctDNA variation noted in the Andean potatoes may have occurred in the early stage of species differentiation of South American tuber-bearing Solanums.

Genetics of self-compatibility in a self-incompatible wild diploid potato species Solanum chacoense. 2. Localization of an S locus inhibitor (Sli) gene on the potato genome using DNA markers

A self-compatible (SC) hybrid plant F1-1 was obtained from a cross between a SC variant of a wild diploid potato species, Solanum chacoense, and a self-incompatible (SI) cultivated diploid species, S. phureja. The clone F1-1 has previously been proposed to have a dominant S locus inhibitor gene (Sli) in a heterozygous condition. It was crossed as a male parent with a selected clone from a S. stenotomum-S. phureja population, resulting in a segregating population consisting of 116 hybrid plants. Self-compatibility was assessed by selfing each of the hybrids. Sixty-six of them were SC, while 35 were SI, showing a significant distortion from an expected Mendelian ratio of 1:1. A genetic linkage map was constructed using DNA markers to localize the Sli gene. A total of 28 RAPD and 127 RFLP markers identified 109 mapping positions on 12 linkage groups. The Sli gene was mapped at a distal end of chromosome 12. Since the S locus has been localized on chromosome 1 on the potato RFLP map, it is confirmed that the Sli gene is independent of the S locus.

Genetics of self-compatibility in a self-incompatible wild diploid potato species Solanum chacoense. 1. Detection of an S locus inhibitor (Sli) gene

A self-compatible (SC) variant of a wild diploid potato species, Solanum chacoense, which is normally self-incompatible (SI), was investigated for the nature and genetics of self-compatibility. It was crossed with a SI cultivated diploid potato species, S. phureja. The F1 progeny segregated SC vs. SI. Diallel crosses were made among 15 F1s. Self-compatibility was tested in a selfed family of a parental SC variant and in sib-mated and selfed families of F1 progeny. All the data suggest that there is a single dominant gene (Sli) with sporophytic action inhibiting S gene expression in the pollen. Plants having a ‘Sli’ gene, produce pollen which is compatible to its own parent and plants with similar S genes. The ‘Sli’ gene has been maintained in a heterozygous condition through eight selfing generations (S8) implying that dominant homozygotes might be associated with lethality.

Successive domestication and evolution of the Andean potatoes as revealed by chloroplast DNA restriction endonuclease analysis

Five chloroplast DNA (ctDNA) types (W, T, C, S, and A) have previously been identified in the Andean tetraploid cultivated potatoes (Solanum tuberosum ssp. andigena) and three types (C, S, and A) in diploid cultivated potatoes (S. stenotomum). In this study, ctDNA types were determined for an additional 35 accessions of S. stenotomum and 97 accessions of putative ancestral wild species (15 of S. brevicaule, 26 of S. bukasovii, 4 of S. candolleanum, 25 of S. canasense, 17 of S. leptophyes, and 10 of S. multidissectum). The first five ctDNA types were also identified in S. stenotomum. The wild species were also polymorphic for ctDNA types except for S. brevicaule, which had only W-type ctDNA. T-type ctDNA was not found in any of the wild species and could have originated from W-type ctDNA after S. stenotomum arose. The other types of ctDNA evolved in wild species. The geographical distribution of each ctDNA type indicated that A-type ctDNA arose in central Peru and T-type ctDNA in the Bolivia-Argentine boundary. It is implied that potatoes were successively domesticated and that, in parallel, several wild species were differentiated from time to time and place to place from the ‘ancestral species’ complex. Subsequent sexual polyploidization formed a wide ctDNA diversity among the Andean tetraploid potatoes, and selection from them formed the limited ctDNA diversity found in Chilean tetraploid potatoes (ssp. tuberosum).

Genetic relationships of Japanese potato cultivars assessed by RAPD analysis

Seventy-three breeding lines and cultivars, which included all Japanese cultivars, were assessed by random amplified polymorphic DNA (RAPD) analysis. Thirty-one of 40 decamer primers revealed 84 scorable RAPDs. Using these RAPDs, 67 of 73 cultivars were distinguished from each other. One of the cultivars released as a protoclonal variant was able to distinguish from the parent by increasing the number of primers surveyed. Based on the number of different RAPDs between each pair of accessions, cluster analysis was performed to exploit genetic diversity in Japanese cultivars. Closely related cultivars deduced from their pedigrees were clustered closely, indicating that similarities based on the presence vs. absence of RAPDs were reflections of genetic similarities. Old Japanese cultivars, as suggested by their similarity of chloroplast DNA toS. tuberosum ssp.andigena, were indeed clustered with ssp.andigena accessions, supporting these were relic cultivars of early European potatoes. The present study suggests that Japanese potatoes are an interesting mass of genetic diversity including North American, European, and Andean germplasms and relic potatoes.CompendioSetenta y tres líneas de mejoramiento y cultivares, que incluyen a todos los cultivares japoneses, fueron determinados por el análisis del DNA polimórfico amplificado al azar (RAPD). Treinta y uno de 40 imprimadores decameros revelaron 84 RAPDs posibles de marcar. Utilizando estos RAPDs, 67 de 73 cultivares fueron distinguidos unos de los otros. Uno de los cultivares liberados como una variante protoclonal fue distinguido del progenitor incrementando el numéro de imprimadores estudiados. Basándose en el numéro de diferentes RAPDs entre cada par de entradas, se llevó a cabo un análisis de grupos para aprovechar la diversidad genética en los cultivares japoneses. Los cultivares muy relacionados a juzgar por sus genealogías se encontraban bien agrupados, indicando que las similitudes basadas en la presencia o ausencia de RAPDs eran un reflejo de las similitudes genéticas. Los viejos cultivares japoneses, a juzgar por la similitud del DNA de sus cloroplastos a S. tuberosum ssp. andigena, estaban de hecho agrupados con las entradas de la ssp. andigena, apoyadas por los viejos cultivares de las primeras papas europeas. Este estudio sugiere que las papas japonesas son una masa imteresante de diversidad genética incluyendo germoplasmas norteamericanos, europeos y andinos, y papas muy antiguas.

Cultivated potato chloroplast DNA differs from the wild type by one deletion- Evidence and implications*

SummaryThe chloroplast DNA (ctDNA) of Solanum tuberosum ssp. tuberosum (T type) and S. chacoense (W type) yield five different restriction fragment patterns with five different restriction endonucleases. DNA-DNA hybridization tests revealed that these differences were all caused by one physical deletion (about 400 bp in size) in the ctDNA of ssp. tuberosum. This suggests that T type ctDNA of the common potato and of Chilean tuberosum originated from W type ctDNA. The deleted region of the T type ctDNA is probably not concerned with gene-cytoplasmic male sterility.

T-type chloroplast DNA inSolarium tuberosum L. ssp.tuberosum was conferred from some populations ofS. tarijense Hawkes

The highly heterozygous and tetraploid nature of potato (Solanum tuberosum L. ssp.tuberosum) has hampered discovery of its wild ancestral species. Chloroplast DNA is a very reliable indicator to trace maternal ancestry of crops. Most of the common potato (grown worldwide) has unique, T-type chloroplast DNA derived from Chilean cultivated potato (both areS. tuberosum ssp.tuberosum). Analyzing seven different chloroplast DNA markers, I found all the T-type accessions of cultivated potatoes shared the same chloroplast DNA haplotype only with some accessions ofS. tarijense Hawkes and its derived hybrids. Thus, I conclude that some populations ofS. tarijense acted as the maternal ancestor of potato.ResumenLa alta heterozigosis y naturaleza tetraploide de a papa (Solanum tuberosum L. ssp.tuberosum) ha dificultado el descubrimiento de su ascendiente silvestre ancestral. El DNA de cloroplastos es un indicador muy confiable para buscar el origen del ancestro materno de los cultivos. La mayoría de papas comunes (cultivadas mundialmente) tienen un singular ADN de cloroplastos tipo T derivado de la papa chilena cultivada (S. tubero-sum ssp.tuberosum). Al analizar siete marcadores diferentes de ADN de cloroplastos se encontró que todas las accesiones tipo T de papas cultivadas compartían el mismo haplotipo de ADN de cloroplasto solamente con algunas accesiones deS. tarijense Hawkes y sus hibridos derivados. Así, se concluye que algunas poblaciones deS. tarijense actuaron como ancestros maternos de la papa.